SNP Links for Gene (Select 100033814) - SNP

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Links from Gene

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Select item 14887998031.

rs1488799803 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 15:25243818 (GRCh38)
15:25488965 (GRCh37)
Canonical SPDI:: NC_000015.10:25243817:G:A,NC_000015.10:25243817:G:C
Gene:: SNORD115-40 (Varview), SNORD115-41 (Varview), SNHG14 (Varview)
Functional Consequence:: upstream_transcript_variant,500B_downstream_variant,intron_variant,downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
HGVS:: NC_000015.10:g.25243818G>A, NC_000015.10:g.25243818G>C, NC_000015.9:g.25488965G>A, NC_000015.9:g.25488965G>C, NG_002690.1:g.462909G>A, NG_002690.1:g.462909G>C

Select item 14878240492.

rs1487824049 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:25244179 (GRCh38)
15:25489326 (GRCh37)
Canonical SPDI:: NC_000015.10:25244178:A:G
Gene:: SNORD115-40 (Varview), SNORD115-41 (Varview), SNHG14 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,500B_downstream_variant,downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000036/5 (GnomAD)
G=0.000156/1 (1000Genomes)
HGVS:: NC_000015.10:g.25244179A>G, NC_000015.9:g.25489326A>G, NG_002690.1:g.463270A>G, NR_146177.1:n.16686A>G

Select item 14871647783.

rs1487164778 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:25244065 (GRCh38)
15:25489212 (GRCh37)
Canonical SPDI:: NC_000015.10:25244064:T:C
Gene:: SNORD115-40 (Varview), SNORD115-41 (Varview), SNHG14 (Varview)
Functional Consequence:: upstream_transcript_variant,500B_downstream_variant,intron_variant,downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000015.10:g.25244065T>C, NC_000015.9:g.25489212T>C, NG_002690.1:g.463156T>C

Select item 14860484264.

rs1486048426 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:25242090 (GRCh38)
15:25487237 (GRCh37)
Canonical SPDI:: NC_000015.10:25242089:A:G
Gene:: SNORD115-39 (Varview), SNORD115-40 (Varview), SNHG14 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,500B_downstream_variant,downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency
MAF:: G=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25242090A>G, NC_000015.9:g.25487237A>G, NG_002690.1:g.461181A>G, NR_146177.1:n.16439A>G

Select item 14856866655.

rs1485686665 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 15:25242920 (GRCh38)
15:25488067 (GRCh37)
Canonical SPDI:: NC_000015.10:25242919:T:G
Gene:: SNORD115-40 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000038/10 (TOPMED)
G=0.000043/6 (GnomAD)
HGVS:: NC_000015.10:g.25242920T>G, NC_000015.9:g.25488067T>G, NG_002690.1:g.462011T>G

Select item 14856446886.

rs1485644688 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:25242458 (GRCh38)
15:25487605 (GRCh37)
Canonical SPDI:: NC_000015.10:25242457:G:A
Gene:: SNORD115-40 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000015.10:g.25242458G>A, NC_000015.9:g.25487605G>A, NG_002690.1:g.461549G>A

Select item 14855122967.

rs1485512296 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:25243199 (GRCh38)
15:25488346 (GRCh37)
Canonical SPDI:: NC_000015.10:25243198:A:G
Gene:: SNORD115-40 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000021/3 (GnomAD)
G=0.000023/6 (TOPMED)
HGVS:: NC_000015.10:g.25243199A>G, NC_000015.9:g.25488346A>G, NG_002690.1:g.462290A>G

Select item 14854285698.

rs1485428569 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 15:25242239 (GRCh38)
15:25487386 (GRCh37)
Canonical SPDI:: NC_000015.10:25242238:G:A,NC_000015.10:25242238:G:C,NC_000015.10:25242238:G:T
Gene:: SNORD115-39 (Varview), SNORD115-40 (Varview), SNHG14 (Varview)
Functional Consequence:: upstream_transcript_variant,500B_downstream_variant,intron_variant,downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25242239G>A, NC_000015.10:g.25242239G>C, NC_000015.10:g.25242239G>T, NC_000015.9:g.25487386G>A, NC_000015.9:g.25487386G>C, NC_000015.9:g.25487386G>T, NG_002690.1:g.461330G>A, NG_002690.1:g.461330G>C, NG_002690.1:g.461330G>T

Select item 14848822469.

rs1484882246 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:25243452 (GRCh38)
15:25488599 (GRCh37)
Canonical SPDI:: NC_000015.10:25243451:G:A
Gene:: SNORD115-40 (Varview), SNHG14 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000015.10:g.25243452G>A, NC_000015.9:g.25488599G>A, NG_002690.1:g.462543G>A, NR_146177.1:n.16491G>A

Select item 148100973110.

rs1481009731 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 15:25242431 (GRCh38)
15:25487578 (GRCh37)
Canonical SPDI:: NC_000015.10:25242430:C:A,NC_000015.10:25242430:C:T
Gene:: SNORD115-40 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000015.10:g.25242431C>A, NC_000015.10:g.25242431C>T, NC_000015.9:g.25487578C>A, NC_000015.9:g.25487578C>T, NG_002690.1:g.461522C>A, NG_002690.1:g.461522C>T

Select item 147928131611.

rs1479281316 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 15:25243808 (GRCh38)
15:25488955 (GRCh37)
Canonical SPDI:: NC_000015.10:25243807:C:A
Gene:: SNORD115-40 (Varview), SNORD115-41 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,2KB_upstream_variant,upstream_transcript_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000015.10:g.25243808C>A, NC_000015.9:g.25488955C>A, NG_002690.1:g.462899C>A

Select item 147878983212.

rs1478789832 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:25243579 (GRCh38)
15:25488726 (GRCh37)
Canonical SPDI:: NC_000015.10:25243578:T:C
Gene:: SNORD115-40 (Varview), SNORD115-41 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000015.10:g.25243579T>C, NC_000015.9:g.25488726T>C, NG_002690.1:g.462670T>C

Select item 147846284013.

rs1478462840 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 15:25243862 (GRCh38)
15:25489009 (GRCh37)
Canonical SPDI:: NC_000015.10:25243861:G:T
Gene:: SNORD115-40 (Varview), SNORD115-41 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,2KB_upstream_variant,upstream_transcript_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000015.10:g.25243862G>T, NC_000015.9:g.25489009G>T, NG_002690.1:g.462953G>T

Select item 147750533014.

rs1477505330 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:25243503 (GRCh38)
15:25488650 (GRCh37)
Canonical SPDI:: NC_000015.10:25243502:T:C
Gene:: SNORD115-40 (Varview), SNORD115-41 (Varview), SNHG14 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25243503T>C, NC_000015.9:g.25488650T>C, NG_002690.1:g.462594T>C, NR_146177.1:n.16542T>C

Select item 147688562615.

rs1476885626 [Homo sapiens]

Variant type:: INS
Alleles:: ->TCTG [Show Flanks]
Chromosome:: 15:25243542 (GRCh38)
15:25488690 (GRCh37)
Canonical SPDI:: NC_000015.10:25243542::TCTG
Gene:: SNORD115-40 (Varview), SNORD115-41 (Varview), SNHG14 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TCTG=0.000084/1 (ALFA)
TCTG=0.000023/6 (TOPMED)
TCTG=0.000029/4 (GnomAD)
HGVS:: NC_000015.10:g.25243542_25243543insTCTG, NC_000015.9:g.25488689_25488690insTCTG, NG_002690.1:g.462633_462634insTCTG, NR_146177.1:n.16581_16582insTCTG

Select item 147682176016.

rs1476821760 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:25244112 (GRCh38)
15:25489259 (GRCh37)
Canonical SPDI:: NC_000015.10:25244111:C:T
Gene:: SNORD115-40 (Varview), SNORD115-41 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,2KB_upstream_variant,upstream_transcript_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.25244112C>T, NC_000015.9:g.25489259C>T, NG_002690.1:g.463203C>T

Select item 147671017817.

rs1476710178 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:25242744 (GRCh38)
15:25487891 (GRCh37)
Canonical SPDI:: NC_000015.10:25242743:C:T
Gene:: SNORD115-40 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000026/7 (TOPMED)
T=0.000029/4 (GnomAD)
HGVS:: NC_000015.10:g.25242744C>T, NC_000015.9:g.25487891C>T, NG_002690.1:g.461835C>T

Select item 147620532118.

rs1476205321 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:25242160 (GRCh38)
15:25487307 (GRCh37)
Canonical SPDI:: NC_000015.10:25242159:G:A
Gene:: SNORD115-39 (Varview), SNORD115-40 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,2KB_upstream_variant,upstream_transcript_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.25242160G>A, NC_000015.9:g.25487307G>A, NG_002690.1:g.461251G>A

Select item 147602706919.

rs1476027069 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 15:25243186 (GRCh38)
15:25488333 (GRCh37)
Canonical SPDI:: NC_000015.10:25243185:C:G,NC_000015.10:25243185:C:T
Gene:: SNORD115-40 (Varview), SNHG14 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.25243186C>G, NC_000015.10:g.25243186C>T, NC_000015.9:g.25488333C>G, NC_000015.9:g.25488333C>T, NG_002690.1:g.462277C>G, NG_002690.1:g.462277C>T

Select item 147270009920.

rs1472700099 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:25243653 (GRCh38)
15:25488800 (GRCh37)
Canonical SPDI:: NC_000015.10:25243652:T:C
Gene:: SNORD115-40 (Varview), SNORD115-41 (Varview), SNHG14 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000015.10:g.25243653T>C, NC_000015.9:g.25488800T>C, NG_002690.1:g.462744T>C, NR_003355.1:n.40T>C