SNP Links for Gene (Select 100128822) - SNP

Links from Gene

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Select item 14905753921.

rs1490575392 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 7:152462479 (GRCh38)
7:152159564 (GRCh37)
Canonical SPDI:: NC_000007.14:152462478:C:G
Gene:: LINC01003 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.152462479C>G, NC_000007.13:g.152159564C>G

Select item 14893985432.

rs1489398543 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:152463464 (GRCh38)
7:152160549 (GRCh37)
Canonical SPDI:: NC_000007.14:152463463:G:A
Gene:: LINC01003 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000007.14:g.152463464G>A, NC_000007.13:g.152160549G>A

Select item 14890832613.

rs1489083261 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:152463905 (GRCh38)
7:152160990 (GRCh37)
Canonical SPDI:: NC_000007.14:152463904:A:G
Gene:: LINC01003 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/1 (GnomAD)
HGVS:: NC_000007.14:g.152463905A>G, NC_000007.13:g.152160990A>G

Select item 14888603494.

rs1488860349 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:152465533 (GRCh38)
7:152162618 (GRCh37)
Canonical SPDI:: NC_000007.14:152465532:A:G
Gene:: LINC01003 (Varview)
Functional Consequence:: non_coding_transcript_variant
HGVS:: NC_000007.14:g.152465533A>G, NC_000007.13:g.152162618A>G, NR_027387.1:n.1410A>G

Select item 14888087315.

rs1488808731 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 7:152464317 (GRCh38)
7:152161402 (GRCh37)
Canonical SPDI:: NC_000007.14:152464316:G:A,NC_000007.14:152464316:G:C,NC_000007.14:152464316:G:T
Gene:: LINC01003 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
HGVS:: NC_000007.14:g.152464317G>A, NC_000007.14:g.152464317G>C, NC_000007.14:g.152464317G>T, NC_000007.13:g.152161402G>A, NC_000007.13:g.152161402G>C, NC_000007.13:g.152161402G>T, NR_027387.1:n.194G>A, NR_027387.1:n.194G>C, NR_027387.1:n.194G>T

Select item 14874169846.

rs1487416984 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>-,GG [Show Flanks]
Chromosome:: 7:152464677 (GRCh38)
7:152161762 (GRCh37)
Canonical SPDI:: NC_000007.14:152464676:GGGGGG:GGGGG,NC_000007.14:152464676:GGGGGG:GGGGGGG
Gene:: LINC01003 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGGGGGG=0./0 (ALFA)
-=0.000053/14 (TOPMED)
HGVS:: NC_000007.14:g.152464682del, NC_000007.14:g.152464682dup, NC_000007.13:g.152161767del, NC_000007.13:g.152161767dup, NR_027387.1:n.559del, NR_027387.1:n.559dup

Select item 14871231927.

rs1487123192 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->G [Show Flanks]
Chromosome:: 7:152464316 (GRCh38)
7:152161402 (GRCh37)
Canonical SPDI:: NC_000007.14:152464316:GG:GGG
Gene:: LINC01003 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: GGG=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.152464318dup, NC_000007.13:g.152161403dup, NR_027387.1:n.195dup

Select item 14871056588.

rs1487105658 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 7:152462931 (GRCh38)
7:152160016 (GRCh37)
Canonical SPDI:: NC_000007.14:152462930:C:G
Gene:: LINC01003 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000015/4 (TOPMED)
G=0.000021/3 (GnomAD)
G=0.000035/1 (TOMMO)
HGVS:: NC_000007.14:g.152462931C>G, NC_000007.13:g.152160016C>G

Select item 14869193639.

rs1486919363 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 7:152463459 (GRCh38)
7:152160544 (GRCh37)
Canonical SPDI:: NC_000007.14:152463458:C:A
Gene:: LINC01003 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000007.14:g.152463459C>A, NC_000007.13:g.152160544C>A

Select item 148689388310.

rs1486893883 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 7:152463826 (GRCh38)
7:152160911 (GRCh37)
Canonical SPDI:: NC_000007.14:152463825:T:C,NC_000007.14:152463825:T:G
Gene:: LINC01003 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: C=0.00002/1 (GnomAD)
G=0.02132/60 (KOREAN)
HGVS:: NC_000007.14:g.152463826T>C, NC_000007.14:g.152463826T>G, NC_000007.13:g.152160911T>C, NC_000007.13:g.152160911T>G

Select item 148597100711.

rs1485971007 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 7:152464458 (GRCh38)
7:152161543 (GRCh37)
Canonical SPDI:: NC_000007.14:152464457:G:A,NC_000007.14:152464457:G:T
Gene:: LINC01003 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000007.14:g.152464458G>A, NC_000007.14:g.152464458G>T, NC_000007.13:g.152161543G>A, NC_000007.13:g.152161543G>T, NR_027387.1:n.335G>A, NR_027387.1:n.335G>T

Select item 148578477512.

rs1485784775 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 7:152464053 (GRCh38)
7:152161138 (GRCh37)
Canonical SPDI:: NC_000007.14:152464052:G:A,NC_000007.14:152464052:G:C
Gene:: LINC01003 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000014/2 (GnomAD)
HGVS:: NC_000007.14:g.152464053G>A, NC_000007.14:g.152464053G>C, NC_000007.13:g.152161138G>A, NC_000007.13:g.152161138G>C

Select item 148550456413.

rs1485504564 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 7:152465897 (GRCh38)
7:152162982 (GRCh37)
Canonical SPDI:: NC_000007.14:152465896:T:G
Gene:: LINC01003 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
G=0.00003/4 (GnomAD)
HGVS:: NC_000007.14:g.152465897T>G, NC_000007.13:g.152162982T>G

Select item 148545460814.

rs1485454608 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:152465200 (GRCh38)
7:152162285 (GRCh37)
Canonical SPDI:: NC_000007.14:152465199:A:G
Gene:: LINC01003 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.152465200A>G, NC_000007.13:g.152162285A>G, NR_027387.1:n.1077A>G

Select item 148514697915.

rs1485146979 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 7:152463689 (GRCh38)
7:152160774 (GRCh37)
Canonical SPDI:: NC_000007.14:152463688:G:C
Gene:: LINC01003 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.152463689G>C, NC_000007.13:g.152160774G>C

Select item 148499142316.

rs1484991423 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:152464280 (GRCh38)
7:152161365 (GRCh37)
Canonical SPDI:: NC_000007.14:152464279:C:T
Gene:: LINC01003 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
HGVS:: NC_000007.14:g.152464280C>T, NC_000007.13:g.152161365C>T, NR_027387.1:n.157C>T

Select item 148482147417.

rs1484821474 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 7:152463864 (GRCh38)
7:152160949 (GRCh37)
Canonical SPDI:: NC_000007.14:152463863:T:G
Gene:: LINC01003 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000009/1 (GnomAD)
HGVS:: NC_000007.14:g.152463864T>G, NC_000007.13:g.152160949T>G

Select item 148429636118.

rs1484296361 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 7:152463288 (GRCh38)
7:152160373 (GRCh37)
Canonical SPDI:: NC_000007.14:152463287:G:A,NC_000007.14:152463287:G:C
Gene:: LINC01003 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.152463288G>A, NC_000007.14:g.152463288G>C, NC_000007.13:g.152160373G>A, NC_000007.13:g.152160373G>C

Select item 148398305119.

rs1483983051 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 7:152465104 (GRCh38)
7:152162189 (GRCh37)
Canonical SPDI:: NC_000007.14:152465103:T:A
Gene:: LINC01003 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000007.14:g.152465104T>A, NC_000007.13:g.152162189T>A, NR_027387.1:n.981T>A

Select item 148397444720.

rs1483974447 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 7:152465361 (GRCh38)
7:152162446 (GRCh37)
Canonical SPDI:: NC_000007.14:152465360:C:A,NC_000007.14:152465360:C:T
Gene:: LINC01003 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000007.14:g.152465361C>A, NC_000007.14:g.152465361C>T, NC_000007.13:g.152162446C>A, NC_000007.13:g.152162446C>T, NR_027387.1:n.1238C>A, NR_027387.1:n.1238C>T

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