SNP Links for Gene (Select 100130992) - SNP

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Select item 14904285041.

rs1490428504 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:22257913 (GRCh38)
10:22546842 (GRCh37)
Canonical SPDI:: NC_000010.11:22257912:C:T
Gene:: LOC100130992 (Varview), LOC105376447 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0.0002/1 (ALFA)
T=0.0002/1 (Estonian)
HGVS:: NC_000010.11:g.22257913C>T, NC_000010.10:g.22546842C>T, XR_001747389.3:n.632G>A, XR_001747390.3:n.632G>A, NR_038921.1:n.5842C>T

Select item 14903517122.

rs1490351712 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 10:22255029 (GRCh38)
10:22543958 (GRCh37)
Canonical SPDI:: NC_000010.11:22255028:G:T
Gene:: LOC100130992 (Varview), LOC105376447 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency
MAF:: T=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.22255029G>T, NC_000010.10:g.22543958G>T, XR_001747389.3:n.3516C>A, XR_001747390.3:n.3516C>A, NR_038921.1:n.2958G>T

Select item 14897328933.

rs1489732893 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 10:22258249 (GRCh38)
10:22547178 (GRCh37)
Canonical SPDI:: NC_000010.11:22258248:A:T
Gene:: LOC100130992 (Varview), LOC105376447 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.22258249A>T, NC_000010.10:g.22547178A>T, XR_001747389.3:n.296T>A, XR_001747390.3:n.296T>A, NR_038921.1:n.6178A>T

Select item 14896065714.

rs1489606571 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 10:22254693 (GRCh38)
10:22543622 (GRCh37)
Canonical SPDI:: NC_000010.11:22254692:T:G
Gene:: LOC100130992 (Varview), LOC105376447 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000010.11:g.22254693T>G, NC_000010.10:g.22543622T>G, XR_001747389.3:n.3852A>C, XR_001747389.1:n.45A>C, XR_001747390.3:n.3852A>C, XR_001747390.1:n.45A>C, NR_038921.1:n.2622T>G

Select item 14882149405.

rs1488214940 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:22253489 (GRCh38)
10:22542418 (GRCh37)
Canonical SPDI:: NC_000010.11:22253488:A:G
Gene:: LOC100130992 (Varview), LOC105376447 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.00003/8 (TOPMED)
HGVS:: NC_000010.11:g.22253489A>G, NC_000010.10:g.22542418A>G, XR_001747389.3:n.5056T>C, XR_001747389.2:n.1130T>C, XR_001747389.1:n.1249T>C, XR_001747390.3:n.5056T>C, XR_001747390.2:n.1130T>C, XR_001747390.1:n.1249T>C, NR_038921.1:n.1418A>G

Select item 14879421706.

rs1487942170 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 10:22254549 (GRCh38)
10:22543478 (GRCh37)
Canonical SPDI:: NC_000010.11:22254548:A:C,NC_000010.11:22254548:A:G
Gene:: LOC100130992 (Varview), LOC105376447 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.22254549A>C, NC_000010.11:g.22254549A>G, NC_000010.10:g.22543478A>C, NC_000010.10:g.22543478A>G, XR_001747389.3:n.3996T>G, XR_001747389.3:n.3996T>C, XR_001747389.2:n.70T>G, XR_001747389.2:n.70T>C, XR_001747389.1:n.189T>G, XR_001747389.1:n.189T>C, XR_001747390.3:n.3996T>G, XR_001747390.3:n.3996T>C, XR_001747390.2:n.70T>G, XR_001747390.2:n.70T>C, XR_001747390.1:n.189T>G, XR_001747390.1:n.189T>C, NR_038921.1:n.2478A>C, NR_038921.1:n.2478A>G

Select item 14878767027.

rs1487876702 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:22255695 (GRCh38)
10:22544624 (GRCh37)
Canonical SPDI:: NC_000010.11:22255694:A:G
Gene:: LOC100130992 (Varview), LOC105376447 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000014/2 (GnomAD)
G=0.00003/8 (TOPMED)
HGVS:: NC_000010.11:g.22255695A>G, NC_000010.10:g.22544624A>G, XR_001747389.3:n.2850T>C, XR_001747390.3:n.2850T>C, NR_038921.1:n.3624A>G

Select item 14876425038.

rs1487642503 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 10:22255874 (GRCh38)
10:22544803 (GRCh37)
Canonical SPDI:: NC_000010.11:22255873:G:C
Gene:: LOC100130992 (Varview), LOC105376447 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000015/4 (TOPMED)
C=0.000021/3 (GnomAD)
HGVS:: NC_000010.11:g.22255874G>C, NC_000010.10:g.22544803G>C, XR_001747389.3:n.2671C>G, XR_001747390.3:n.2671C>G, NR_038921.1:n.3803G>C

Select item 14876368479.

rs1487636847 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 10:22252704 (GRCh38)
10:22541633 (GRCh37)
Canonical SPDI:: NC_000010.11:22252703:C:A
Gene:: LOC100130992 (Varview), LOC105376447 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,splice_donor_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000010.11:g.22252704C>A, NC_000010.10:g.22541633C>A, NR_038921.1:n.633C>A

Select item 148746401310.

rs1487464013 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:22256659 (GRCh38)
10:22545588 (GRCh37)
Canonical SPDI:: NC_000010.11:22256658:G:A
Gene:: LOC100130992 (Varview), LOC105376447 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000010.11:g.22256659G>A, NC_000010.10:g.22545588G>A, XR_001747389.3:n.1886C>T, XR_001747390.3:n.1886C>T, NR_038921.1:n.4588G>A

Select item 148730926511.

rs1487309265 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 10:22253860 (GRCh38)
10:22542789 (GRCh37)
Canonical SPDI:: NC_000010.11:22253859:A:T
Gene:: LOC100130992 (Varview), LOC105376447 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency
MAF:: T=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.22253860A>T, NC_000010.10:g.22542789A>T, XR_001747389.3:n.4685T>A, XR_001747389.2:n.759T>A, XR_001747389.1:n.878T>A, XR_001747390.3:n.4685T>A, XR_001747390.2:n.759T>A, XR_001747390.1:n.878T>A, NR_038921.1:n.1789A>T

Select item 148718864012.

rs1487188640 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 10:22252764 (GRCh38)
10:22541693 (GRCh37)
Canonical SPDI:: NC_000010.11:22252763:G:T
Gene:: LOC100130992 (Varview), LOC105376447 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.22252764G>T, NC_000010.10:g.22541693G>T, XR_001747389.3:n.5781C>A, XR_001747389.2:n.1855C>A, XR_001747389.1:n.1974C>A, NR_038921.1:n.693G>T

Select item 148590835213.

rs1485908352 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:22256816 (GRCh38)
10:22545745 (GRCh37)
Canonical SPDI:: NC_000010.11:22256815:T:C
Gene:: LOC100130992 (Varview), LOC105376447 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.22256816T>C, NC_000010.10:g.22545745T>C, XR_001747389.3:n.1729A>G, XR_001747390.3:n.1729A>G, NR_038921.1:n.4745T>C

Select item 148558097914.

rs1485580979 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:22257348 (GRCh38)
10:22546277 (GRCh37)
Canonical SPDI:: NC_000010.11:22257347:C:T
Gene:: LOC100130992 (Varview), LOC105376447 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000010.11:g.22257348C>T, NC_000010.10:g.22546277C>T, XR_001747389.3:n.1197G>A, XR_001747390.3:n.1197G>A, NR_038921.1:n.5277C>T

Select item 148528938815.

rs1485289388 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 10:22253543 (GRCh38)
10:22542472 (GRCh37)
Canonical SPDI:: NC_000010.11:22253542:G:T
Gene:: LOC100130992 (Varview), LOC105376447 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
HGVS:: NC_000010.11:g.22253543G>T, NC_000010.10:g.22542472G>T, XR_001747389.3:n.5002C>A, XR_001747389.2:n.1076C>A, XR_001747389.1:n.1195C>A, XR_001747390.3:n.5002C>A, XR_001747390.2:n.1076C>A, XR_001747390.1:n.1195C>A, NR_038921.1:n.1472G>T

Select item 148494452216.

rs1484944522 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 10:22251316 (GRCh38)
10:22540245 (GRCh37)
Canonical SPDI:: NC_000010.11:22251315:C:A
Gene:: LOC100130992 (Varview), LOC105376447 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000021/3 (GnomAD)
HGVS:: NC_000010.11:g.22251316C>A, NC_000010.10:g.22540245C>A, XR_001747389.3:n.6458G>T, XR_001747389.2:n.2532G>T, XR_001747389.1:n.2651G>T, XR_001747390.3:n.5737G>T, XR_001747390.2:n.1811G>T, XR_001747390.1:n.1930G>T

Select item 148469154417.

rs1484691544 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:22250688 (GRCh38)
10:22539617 (GRCh37)
Canonical SPDI:: NC_000010.11:22250687:G:A
Gene:: LOC100130992 (Varview), LOC105376447 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.22250688G>A, NC_000010.10:g.22539617G>A, XR_001747389.3:n.7086C>T, XR_001747389.2:n.3160C>T, XR_001747389.1:n.3279C>T, XR_001747390.3:n.6365C>T, XR_001747390.2:n.2439C>T, XR_001747390.1:n.2558C>T

Select item 148440016918.

rs1484400169 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 10:22250315 (GRCh38)
10:22539244 (GRCh37)
Canonical SPDI:: NC_000010.11:22250314:G:A,NC_000010.11:22250314:G:T
Gene:: LOC100130992 (Varview), LOC105376447 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000049/13 (TOPMED)
A=0.000078/11 (GnomAD)
HGVS:: NC_000010.11:g.22250315G>A, NC_000010.11:g.22250315G>T, NC_000010.10:g.22539244G>A, NC_000010.10:g.22539244G>T, XR_001747389.3:n.7459C>T, XR_001747389.3:n.7459C>A, XR_001747389.2:n.3533C>T, XR_001747389.2:n.3533C>A, XR_001747389.1:n.3652C>T, XR_001747389.1:n.3652C>A, XR_001747390.3:n.6738C>T, XR_001747390.3:n.6738C>A, XR_001747390.2:n.2812C>T, XR_001747390.2:n.2812C>A, XR_001747390.1:n.2931C>T, XR_001747390.1:n.2931C>A

Select item 148305799719.

rs1483057997 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->TTAT [Show Flanks]
Chromosome:: 10:22251102 (GRCh38)
10:22540032 (GRCh37)
Canonical SPDI:: NC_000010.11:22251102:TAT:TATTTAT
Gene:: LOC100130992 (Varview), LOC105376447 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TATTTAT=0./0 (ALFA)
TATT=0.000008/1 (GnomAD)
TATT=0.000071/1 (TOMMO)
HGVS:: NC_000010.11:g.22251105_22251106insTTAT, NC_000010.10:g.22540034_22540035insTTAT, XR_001747389.3:n.6671_6672insAATA, XR_001747389.2:n.2745_2746insAATA, XR_001747389.1:n.2864_2865insAATA, XR_001747390.3:n.5950_5951insAATA, XR_001747390.2:n.2024_2025insAATA, XR_001747390.1:n.2143_2144insAATA

Select item 148257297220.

rs1482572972 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 10:22251653 (GRCh38)
10:22540582 (GRCh37)
Canonical SPDI:: NC_000010.11:22251652:T:A,NC_000010.11:22251652:T:C
Gene:: LOC100130992 (Varview), LOC105376447 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
HGVS:: NC_000010.11:g.22251653T>A, NC_000010.11:g.22251653T>C, NC_000010.10:g.22540582T>A, NC_000010.10:g.22540582T>C, XR_001747389.3:n.6121A>T, XR_001747389.3:n.6121A>G, XR_001747389.2:n.2195A>T, XR_001747389.2:n.2195A>G, XR_001747389.1:n.2314A>T, XR_001747389.1:n.2314A>G, XR_001747390.3:n.5400A>T, XR_001747390.3:n.5400A>G, XR_001747390.2:n.1474A>T, XR_001747390.2:n.1474A>G, XR_001747390.1:n.1593A>T, XR_001747390.1:n.1593A>G

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