SNP Links for Gene (Select 100132234) - SNP

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Select item 14908024371.

rs1490802437 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 13:27952508 (GRCh38)
13:28526645 (GRCh37)
Canonical SPDI:: NC_000013.11:27952507:G:C
Gene:: LINC00543 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency
MAF:: C=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.27952508G>C, NC_000013.10:g.28526645G>C

Select item 14890527492.

rs1489052749 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 13:27954219 (GRCh38)
13:28528356 (GRCh37)
Canonical SPDI:: NC_000013.11:27954218:G:A,NC_000013.11:27954218:G:C
Gene:: LINC00543 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.00016/1 (1000Genomes)
HGVS:: NC_000013.11:g.27954219G>A, NC_000013.11:g.27954219G>C, NC_000013.10:g.28528356G>A, NC_000013.10:g.28528356G>C, NR_135254.1:n.694G>A, NR_135254.1:n.694G>C

Select item 14888614413.

rs1488861441 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 13:27953190 (GRCh38)
13:28527327 (GRCh37)
Canonical SPDI:: NC_000013.11:27953189:A:G
Gene:: LINC00543 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000013.11:g.27953190A>G, NC_000013.10:g.28527327A>G

Select item 14884773144.

rs1488477314 [Homo sapiens]

Variant type:: DELINS
Alleles:: TATTAA>- [Show Flanks]
Chromosome:: 13:27953319 (GRCh38)
13:28527456 (GRCh37)
Canonical SPDI:: NC_000013.11:27953312:TATTAATATTAA:TATTAA
Gene:: LINC00543 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TATTAATATTAA=0./0 (ALFA)
-=0./0 (GnomAD)
-=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.27953313TATTAA[1], NC_000013.10:g.28527450TATTAA[1]

Select item 14883191855.

rs1488319185 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 13:27953579 (GRCh38)
13:28527716 (GRCh37)
Canonical SPDI:: NC_000013.11:27953578:G:A
Gene:: LINC00543 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000013.11:g.27953579G>A, NC_000013.10:g.28527716G>A, NR_135254.1:n.54G>A

Select item 14882169496.

rs1488216949 [Homo sapiens]

Variant type:: DELINS
Alleles:: GGATGGAGT>- [Show Flanks]
Chromosome:: 13:27951566 (GRCh38)
13:28525703 (GRCh37)
Canonical SPDI:: NC_000013.11:27951564:TGGATGGAGT:T
Gene:: LINC00543 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0.0004/2 (ALFA)
HGVS:: NC_000013.11:g.27951566_27951574del, NC_000013.10:g.28525703_28525711del

Select item 14880280567.

rs1488028056 [Homo sapiens]

Variant type:: SNV:
Alleles:: C>A
Chromosome:: no mapping
Canonical SPDI:

Select item 14877602988.

rs1487760298 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 13:27953740 (GRCh38)
13:28527877 (GRCh37)
Canonical SPDI:: NC_000013.11:27953739:C:T
Gene:: LINC00543 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by cluster
HGVS:: NC_000013.11:g.27953740C>T, NC_000013.10:g.28527877C>T, NR_135254.1:n.215C>T

Select item 14863869419.

rs1486386941 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 13:27955506 (GRCh38)
13:28529643 (GRCh37)
Canonical SPDI:: NC_000013.11:27955505:G:C
Gene:: LINC00543 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000013.11:g.27955506G>C, NC_000013.10:g.28529643G>C

Select item 148628827110.

rs1486288271 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 13:27954064 (GRCh38)
13:28528201 (GRCh37)
Canonical SPDI:: NC_000013.11:27954063:C:A,NC_000013.11:27954063:C:T
Gene:: LINC00543 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000066/1 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000223/1 (Estonian)
HGVS:: NC_000013.11:g.27954064C>A, NC_000013.11:g.27954064C>T, NC_000013.10:g.28528201C>A, NC_000013.10:g.28528201C>T, NR_135254.1:n.539C>A, NR_135254.1:n.539C>T

Select item 148602811411.

rs1486028114 [Homo sapiens]

Variant type:: DELINS
Alleles:: GATA>- [Show Flanks]
Chromosome:: 13:27952454 (GRCh38)
13:28526591 (GRCh37)
Canonical SPDI:: NC_000013.11:27952450:ATAGATA:ATA
Gene:: LINC00543 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: ATA=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.27952454_27952457del, NC_000013.10:g.28526591_28526594del

Select item 148544455612.

rs1485444556 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 13:27955639 (GRCh38)
13:28529776 (GRCh37)
Canonical SPDI:: NC_000013.11:27955638:C:A
Gene:: LINC00543 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000013.11:g.27955639C>A, NC_000013.10:g.28529776C>A

Select item 148475036413.

rs1484750364 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 13:27954906 (GRCh38)
13:28529043 (GRCh37)
Canonical SPDI:: NC_000013.11:27954905:T:C
Gene:: LINC00543 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.27954906T>C, NC_000013.10:g.28529043T>C, NR_135254.1:n.1381T>C

Select item 148472002114.

rs1484720021 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 13:27954043 (GRCh38)
13:28528180 (GRCh37)
Canonical SPDI:: NC_000013.11:27954042:G:T
Gene:: LINC00543 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000013.11:g.27954043G>T, NC_000013.10:g.28528180G>T, NR_135254.1:n.518G>T

Select item 148406901115.

rs1484069011 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 13:27953473 (GRCh38)
13:28527610 (GRCh37)
Canonical SPDI:: NC_000013.11:27953472:T:C
Gene:: LINC00543 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000013.11:g.27953473T>C, NC_000013.10:g.28527610T>C

Select item 148393559716.

rs1483935597 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 13:27954428 (GRCh38)
13:28528565 (GRCh37)
Canonical SPDI:: NC_000013.11:27954427:C:T
Gene:: LINC00543 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.27954428C>T, NC_000013.10:g.28528565C>T, NR_135254.1:n.903C>T

Select item 148274669717.

rs1482746697 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 13:27953913 (GRCh38)
13:28528050 (GRCh37)
Canonical SPDI:: NC_000013.11:27953912:G:C
Gene:: LINC00543 (Varview)
Functional Consequence:: non_coding_transcript_variant
HGVS:: NC_000013.11:g.27953913G>C, NC_000013.10:g.28528050G>C, NR_135254.1:n.388G>C

Select item 148091825418.

rs1480918254 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 13:27952138 (GRCh38)
13:28526275 (GRCh37)
Canonical SPDI:: NC_000013.11:27952137:T:C
Gene:: LINC00543 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000013.11:g.27952138T>C, NC_000013.10:g.28526275T>C

Select item 147955743619.

rs1479557436 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->ATAGCAATATTCTTGCTGTTGTTG [Show Flanks]
Chromosome:: 13:27955662 (GRCh38)
13:28529800 (GRCh37)
Canonical SPDI:: NC_000013.11:27955662:ATAGCAATATTCTTGCTGTTGTTG:ATAGCAATATTCTTGCTGTTGTTGATAGCAATATTCTTGCTGTTGTTG
Gene:: LINC00543 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: ATAGCAATATTCTTGCTGTTGTTGATAGCAATATTCTTGCTGTTGTTG=0./0 (ALFA)
ATAGCAATATTCTTGCTGTTGTTG=0.000093/13 (GnomAD)
HGVS:: NC_000013.11:g.27955663_27955686dup, NC_000013.10:g.28529800_28529823dup

Select item 147941580420.

rs1479415804 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 13:27954318 (GRCh38)
13:28528455 (GRCh37)
Canonical SPDI:: NC_000013.11:27954317:A:G
Gene:: LINC00543 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000026/7 (TOPMED)
HGVS:: NC_000013.11:g.27954318A>G, NC_000013.10:g.28528455A>G, NR_135254.1:n.793A>G

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