SNP Links for Gene (Select 100132249) - SNP

Warning: The NCBI web site requires JavaScript to function. more...

Links from Gene

Items: 1 to 20 of 1720

<< First< Prev

Page of 86

Next >Last >>

Select item 14915120181.

rs1491512018 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>-,AA [Show Flanks]
Chromosome:: 9:62836208 (GRCh38)
9:66492032 (GRCh37)
Canonical SPDI:: NC_000009.12:62836207:AAAAAAA:AAAAAA,NC_000009.12:62836207:AAAAAAA:AAAAAAAA
Gene:: LOC100132249 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAA=0./0 (ALFA)
-=0.000036/5 (GnomAD)
-=0.000156/1 (1000Genomes)
HGVS:: NC_000009.12:g.62836214del, NC_000009.12:g.62836214dup, NC_000009.11:g.66492038del, NC_000009.11:g.66492038dup, NR_135128.1:n.2139del, NR_135128.1:n.2139dup

Select item 14912798032.

rs1491279803 [Homo sapiens]

Variant type:: DEL
Alleles:: GA>- [Show Flanks]
Chromosome:: 9:62836207 (GRCh38)
9:66492031 (GRCh37)
Canonical SPDI:: NC_000009.12:62836206:GA:
Gene:: LOC100132249 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000009.12:g.62836207_62836208del, NC_000009.11:g.66492031_66492032del, NR_135128.1:n.2139_2140del

Select item 14908304853.

rs1490830485 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 9:62835621 (GRCh38)
9:66491445 (GRCh37)
Canonical SPDI:: NC_000009.12:62835620:A:C
Gene:: LOC100132249 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000084/1 (ALFA)
C=0.000114/16 (GnomAD)
C=0.000625/4 (1000Genomes)
HGVS:: NC_000009.12:g.62835621A>C, NC_000009.11:g.66491445A>C, NR_135128.1:n.2726T>G

Select item 14903378614.

rs1490337861 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:62835836 (GRCh38)
9:66491660 (GRCh37)
Canonical SPDI:: NC_000009.12:62835835:G:A
Gene:: LOC100132249 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000009.12:g.62835836G>A, NC_000009.11:g.66491660G>A, NR_135128.1:n.2511C>T

Select item 14900864655.

rs1490086465 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 9:62838160 (GRCh38)
9:66493984 (GRCh37)
Canonical SPDI:: NC_000009.12:62838159:C:A
Gene:: PTGER4P2-CDK2AP2P2 (Varview), LOC100132249 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.00843/100 (ALFA)
A=0.03825/1081 (TOMMO)
A=0.14897/435 (KOREAN)
HGVS:: NC_000009.12:g.62838160C>A, NC_000009.11:g.66493984C>A, NG_078826.1:g.156C>A, NR_135128.1:n.187G>T

Select item 14895088446.

rs1489508844 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->G [Show Flanks]
Chromosome:: 9:62838315 (GRCh38)
9:66494140 (GRCh37)
Canonical SPDI:: NC_000009.12:62838315:G:GG
Gene:: PTGER4P2-CDK2AP2P2 (Varview), LOC100132249 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GG=0./0 (ALFA)
G=0.000207/29 (GnomAD)
HGVS:: NC_000009.12:g.62838316dup, NC_000009.11:g.66494140dup, NG_078826.1:g.312dup, NR_135128.1:n.31dup

Select item 14889416537.

rs1488941653 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 9:62836719 (GRCh38)
9:66492543 (GRCh37)
Canonical SPDI:: NC_000009.12:62836718:T:A
Gene:: PTGER4P2-CDK2AP2P2 (Varview), LOC100132249 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.62836719T>A, NC_000009.11:g.66492543T>A, NR_135128.1:n.1628A>T

Select item 14888927758.

rs1488892775 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 9:62837502 (GRCh38)
9:66493326 (GRCh37)
Canonical SPDI:: NC_000009.12:62837501:C:G
Gene:: PTGER4P2-CDK2AP2P2 (Varview), LOC100132249 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000043/6 (GnomAD)
G=0.000071/1 (TOMMO)
HGVS:: NC_000009.12:g.62837502C>G, NC_000009.11:g.66493326C>G, NR_135128.1:n.845G>C

Select item 14885427869.

rs1488542786 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 9:62837248 (GRCh38)
9:66493072 (GRCh37)
Canonical SPDI:: NC_000009.12:62837247:T:A,NC_000009.12:62837247:T:C
Gene:: PTGER4P2-CDK2AP2P2 (Varview), LOC100132249 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.00109/7 (1000Genomes)
A=0.00318/53 (TOMMO)
A=0.00491/9 (Korea1K)
A=0.00719/21 (KOREAN)
T=0.5/1 (SGDP_PRJ)
HGVS:: NC_000009.12:g.62837248T>A, NC_000009.12:g.62837248T>C, NC_000009.11:g.66493072T>A, NC_000009.11:g.66493072T>C, NR_135128.1:n.1099A>T, NR_135128.1:n.1099A>G

Select item 148844185810.

rs1488441858 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:62837721 (GRCh38)
9:66493545 (GRCh37)
Canonical SPDI:: NC_000009.12:62837720:C:T
Gene:: PTGER4P2-CDK2AP2P2 (Varview), LOC100132249 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000009.12:g.62837721C>T, NC_000009.11:g.66493545C>T, NR_135128.1:n.626G>A

Select item 148825431111.

rs1488254311 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 9:62838035 (GRCh38)
9:66493859 (GRCh37)
Canonical SPDI:: NC_000009.12:62838034:CC:C
Gene:: PTGER4P2-CDK2AP2P2 (Varview), LOC100132249 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: CC=0./0 (ALFA)
HGVS:: NC_000009.12:g.62838036del, NC_000009.11:g.66493860del, NG_078826.1:g.32del, NR_135128.1:n.312del

Select item 148804948712.

rs1488049487 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:62839799 (GRCh38)
9:66495623 (GRCh37)
Canonical SPDI:: NC_000009.12:62839798:G:A
Gene:: PTGER4P2-CDK2AP2P2 (Varview), LOC100132249 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.62839799G>A, NC_000009.11:g.66495623G>A

Select item 148786618713.

rs1487866187 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 9:62837454 (GRCh38)
9:66493278 (GRCh37)
Canonical SPDI:: NC_000009.12:62837453:G:A,NC_000009.12:62837453:G:C
Gene:: PTGER4P2-CDK2AP2P2 (Varview), LOC100132249 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.002951/35 (ALFA)
C=0.002046/283 (GnomAD)
C=0.015642/262 (TOMMO)
C=0.026694/78 (KOREAN)
C=0.030568/56 (Korea1K)
G=0.5/6 (SGDP_PRJ)
HGVS:: NC_000009.12:g.62837454G>A, NC_000009.12:g.62837454G>C, NC_000009.11:g.66493278G>A, NC_000009.11:g.66493278G>C, NR_135128.1:n.893C>T, NR_135128.1:n.893C>G

Select item 148783427414.

rs1487834274 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:62837656 (GRCh38)
9:66493480 (GRCh37)
Canonical SPDI:: NC_000009.12:62837655:C:T
Gene:: PTGER4P2-CDK2AP2P2 (Varview), LOC100132249 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.62837656C>T, NC_000009.11:g.66493480C>T, NR_135128.1:n.691G>A

Select item 148778253215.

rs1487782532 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->G [Show Flanks]
Chromosome:: 9:62838217 (GRCh38)
9:66494042 (GRCh37)
Canonical SPDI:: NC_000009.12:62838217:GGGGG:GGGGGG
Gene:: PTGER4P2-CDK2AP2P2 (Varview), LOC100132249 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: GGGGGG=0./0 (ALFA)
HGVS:: NC_000009.12:g.62838222dup, NC_000009.11:g.66494046dup, NG_078826.1:g.218dup, NR_135128.1:n.129dup

Select item 148745352716.

rs1487453527 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 9:62837990 (GRCh38)
9:66493814 (GRCh37)
Canonical SPDI:: NC_000009.12:62837989:G:A,NC_000009.12:62837989:G:C
Gene:: PTGER4P2-CDK2AP2P2 (Varview), LOC100132249 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.00008/1 (ALFA)
C=0.00014/2 (TOMMO)
HGVS:: NC_000009.12:g.62837990G>A, NC_000009.12:g.62837990G>C, NC_000009.11:g.66493814G>A, NC_000009.11:g.66493814G>C, NR_135128.1:n.357C>T, NR_135128.1:n.357C>G

Select item 148720523217.

rs1487205232 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,T [Show Flanks]
Chromosome:: 9:62835003 (GRCh38)
9:66490827 (GRCh37)
Canonical SPDI:: NC_000009.12:62835002:A:C,NC_000009.12:62835002:A:T
Gene:: LOC100132249 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
C=0.05099/149 (KOREAN)
C=0.15801/4465 (TOMMO)
HGVS:: NC_000009.12:g.62835003A>C, NC_000009.12:g.62835003A>T, NC_000009.11:g.66490827A>C, NC_000009.11:g.66490827A>T, NR_135128.1:n.3344T>G, NR_135128.1:n.3344T>A

Select item 148680201918.

rs1486802019 [Homo sapiens]

Variant type:: DELINS
Alleles:: CTCCGCGCCTGCACCCCCTCC>- [Show Flanks]
Chromosome:: 9:62838408 (GRCh38)
9:66494232 (GRCh37)
Canonical SPDI:: NC_000009.12:62838405:CCCTCCGCGCCTGCACCCCCTCC:CC
Gene:: PTGER4P2-CDK2AP2P2 (Varview), LOC100132249 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: CC=0./0 (ALFA)
HGVS:: NC_000009.12:g.62838408_62838428del, NC_000009.11:g.66494232_66494252del, NG_078826.1:g.404_424del

Select item 148654610419.

rs1486546104 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:62835788 (GRCh38)
9:66491612 (GRCh37)
Canonical SPDI:: NC_000009.12:62835787:T:C
Gene:: LOC100132249 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000057/8 (GnomAD)
HGVS:: NC_000009.12:g.62835788T>C, NC_000009.11:g.66491612T>C, NR_135128.1:n.2559A>G

Select item 148498561320.

rs1484985613 [Homo sapiens]

Variant type:: DELINS
Alleles:: TC>- [Show Flanks]
Chromosome:: 9:62838426 (GRCh38)
9:66494250 (GRCh37)
Canonical SPDI:: NC_000009.12:62838424:CTC:C
Gene:: PTGER4P2-CDK2AP2P2 (Varview), LOC100132249 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.09568/1135 (ALFA)
-=0.10021/1675 (TOMMO)
HGVS:: NC_000009.12:g.62838426_62838427del, NC_000009.11:g.66494250_66494251del, NG_078826.1:g.422_423del