SNP Links for Gene (Select 100133612) - SNP

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Select item 14910199331.

rs1491019933 has merged into rs1352471810 [Homo sapiens]

Variant type:: DELINS
Alleles:: CTCT>-,CT,CTCTCT [Show Flanks]
Chromosome:: 1:3908400 (GRCh38)
1:3824964 (GRCh37)
Canonical SPDI:: NC_000001.11:3908389:CTCTCTCTCTCTCT:CTCTCTCTCT,NC_000001.11:3908389:CTCTCTCTCTCTCT:CTCTCTCTCTCT,NC_000001.11:3908389:CTCTCTCTCTCTCT:CTCTCTCTCTCTCTCT
Gene:: LINC01134 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CTCTCTCTCTCT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
CT=0.000071/1 (TOMMO)
-=0.005459/10 (Korea1K)
HGVS:: NC_000001.11:g.3908390CT[5], NC_000001.11:g.3908390CT[6], NC_000001.11:g.3908390CT[8], NC_000001.10:g.3824954CT[5], NC_000001.10:g.3824954CT[6], NC_000001.10:g.3824954CT[8], NW_004070864.2:g.1371CT[5], NW_004070864.2:g.1371CT[6], NW_004070864.2:g.1371CT[8]

Select item 14909154062.

rs1490915406 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 1:3899295 (GRCh38)
1:3815859 (GRCh37)
Canonical SPDI:: NC_000001.11:3899294:G:A,NC_000001.11:3899294:G:T
Gene:: C1orf174 (Varview), LINC01134 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,5_prime_UTR_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.3899295G>A, NC_000001.11:g.3899295G>T, NC_000001.10:g.3815859G>A, NC_000001.10:g.3815859G>T, XM_011541323.3:c.-4249C>T, XM_011541323.3:c.-4249C>A

Select item 14908516753.

rs1490851675 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:3909788 (GRCh38)
1:3826352 (GRCh37)
Canonical SPDI:: NC_000001.11:3909787:C:T
Gene:: LINC01134 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000312/2 (1000Genomes)
HGVS:: NC_000001.11:g.3909788C>T, NC_000001.10:g.3826352C>T, NW_004070864.2:g.2769C>T

Select item 14905813164.

rs1490581316 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:3905070 (GRCh38)
1:3821634 (GRCh37)
Canonical SPDI:: NC_000001.11:3905069:A:G
Gene:: LINC01134 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.3905070A>G, NC_000001.10:g.3821634A>G

Select item 14905596205.

rs1490559620 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 1:3915759 (GRCh38)
1:3832323 (GRCh37)
Canonical SPDI:: NC_000001.11:3915758:C:G
Gene:: LINC01134 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000019/5 (TOPMED)
G=0.000021/3 (GnomAD)
HGVS:: NC_000001.11:g.3915759C>G, NC_000001.10:g.3832323C>G, NW_004070864.2:g.8740C>G

Select item 14904251076.

rs1490425107 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:3899634 (GRCh38)
1:3816198 (GRCh37)
Canonical SPDI:: NC_000001.11:3899633:A:G
Gene:: C1orf174 (Varview), LINC01134 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.3899634A>G, NC_000001.10:g.3816198A>G

Select item 14903437197.

rs1490343719 [Homo sapiens]

Variant type:: DELINS
Alleles:: AGGGAGAGTA>- [Show Flanks]
Chromosome:: 1:3902723 (GRCh38)
1:3819287 (GRCh37)
Canonical SPDI:: NC_000001.11:3902721:AAGGGAGAGTA:A
Gene:: LINC01134 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.3902723_3902732del, NC_000001.10:g.3819287_3819296del

Select item 14902725148.

rs1490272514 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:3914414 (GRCh38)
1:3830978 (GRCh37)
Canonical SPDI:: NC_000001.11:3914413:G:A
Gene:: LINC01134 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000015/4 (TOPMED)
A=0.000029/4 (GnomAD)
A=0.000546/1 (Korea1K)
HGVS:: NC_000001.11:g.3914414G>A, NC_000001.10:g.3830978G>A, NW_004070864.2:g.7395G>A, NR_024455.1:n.919G>A

Select item 14902441359.

rs1490244135 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:3915070 (GRCh38)
1:3831634 (GRCh37)
Canonical SPDI:: NC_000001.11:3915069:A:G
Gene:: LINC01134 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000021/3 (GnomAD)
G=0.000042/11 (TOPMED)
HGVS:: NC_000001.11:g.3915070A>G, NC_000001.10:g.3831634A>G, NW_004070864.2:g.8051A>G, NR_024455.1:n.1575A>G

Select item 149005184210.

rs1490051842 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:3908516 (GRCh38)
1:3825080 (GRCh37)
Canonical SPDI:: NC_000001.11:3908515:G:A
Gene:: LINC01134 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000001.11:g.3908516G>A, NC_000001.10:g.3825080G>A, NW_004070864.2:g.1497G>A

Select item 148988132111.

rs1489881321 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:3904986 (GRCh38)
1:3821550 (GRCh37)
Canonical SPDI:: NC_000001.11:3904985:G:A
Gene:: LINC01134 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.3904986G>A, NC_000001.10:g.3821550G>A

Select item 148971087112.

rs1489710871 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 1:3915411 (GRCh38)
1:3831975 (GRCh37)
Canonical SPDI:: NC_000001.11:3915410:C:A,NC_000001.11:3915410:C:T
Gene:: LINC01134 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.3915411C>A, NC_000001.11:g.3915411C>T, NC_000001.10:g.3831975C>A, NC_000001.10:g.3831975C>T, NW_004070864.2:g.8392C>A, NW_004070864.2:g.8392C>T, NR_024455.1:n.1916C>A, NR_024455.1:n.1916C>T

Select item 148966986913.

rs1489669869 [Homo sapiens]

Variant type:: DELINS
Alleles:: TCTCTCTCTCACACACACACACAC>- [Show Flanks]
Chromosome:: 1:3908453 (GRCh38)
1:3825017 (GRCh37)
Canonical SPDI:: NC_000001.11:3908451:CTCTCTCTCTCACACACACACACAC:C
Gene:: LINC01134 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
-=0.00001/1 (GnomAD)
HGVS:: NC_000001.11:g.3908453_3908476del, NC_000001.10:g.3825017_3825040del, NW_004070864.2:g.1434_1457del

Select item 148943710714.

rs1489437107 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 1:3904994 (GRCh38)
1:3821558 (GRCh37)
Canonical SPDI:: NC_000001.11:3904993:A:T
Gene:: LINC01134 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000001.11:g.3904994A>T, NC_000001.10:g.3821558A>T

Select item 148896904015.

rs1488969040 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:3900496 (GRCh38)
1:3817060 (GRCh37)
Canonical SPDI:: NC_000001.11:3900495:G:C
Gene:: C1orf174 (Varview), LINC01134 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.3900496G>C, NC_000001.10:g.3817060G>C, NR_024455.1:n.93G>C

Select item 148883166416.

rs1488831664 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 1:3911564 (GRCh38)
1:3828128 (GRCh37)
Canonical SPDI:: NC_000001.11:3911563:C:A,NC_000001.11:3911563:C:T
Gene:: LINC01134 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.3911564C>A, NC_000001.11:g.3911564C>T, NC_000001.10:g.3828128C>A, NC_000001.10:g.3828128C>T, NW_004070864.2:g.4545C>A, NW_004070864.2:g.4545C>T

Select item 148853196217.

rs1488531962 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 1:3909312 (GRCh38)
1:3825876 (GRCh37)
Canonical SPDI:: NC_000001.11:3909311:C:G
Gene:: LINC01134 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000026/7 (TOPMED)
G=0.000043/6 (GnomAD)
G=0.000312/2 (1000Genomes)
HGVS:: NC_000001.11:g.3909312C>G, NC_000001.10:g.3825876C>G, NW_004070864.2:g.2293C>G

Select item 148841982718.

rs1488419827 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 1:3906277 (GRCh38)
1:3822841 (GRCh37)
Canonical SPDI:: NC_000001.11:3906276:T:A,NC_000001.11:3906276:T:C
Gene:: LINC01134 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.3906277T>A, NC_000001.11:g.3906277T>C, NC_000001.10:g.3822841T>A, NC_000001.10:g.3822841T>C

Select item 148839025719.

rs1488390257 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 1:3907091 (GRCh38)
1:3823655 (GRCh37)
Canonical SPDI:: NC_000001.11:3907090:G:T
Gene:: LINC01134 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.3907091G>T, NC_000001.10:g.3823655G>T, NW_004070864.2:g.72G>T

Select item 148776853320.

rs1487768533 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: 1:3905445 (GRCh38)
1:3822009 (GRCh37)
Canonical SPDI:: NC_000001.11:3905444:GGGG:GGG
Gene:: LINC01134 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGG=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.3905448del, NC_000001.10:g.3822012del

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