SNP Links for Gene (Select 100144597) - SNP

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Select item 14914219191.

rs1491421919 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 20:63049250 (GRCh38)
20:61680603 (GRCh37)
Canonical SPDI:: NC_000020.11:63049250:T:TT
Gene:: LINC01749 (Varview), LINC01056 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: TT=0./0 (ALFA)
HGVS:: NC_000020.11:g.63049251dup, NC_000020.10:g.61680603dup

Select item 14911647352.

rs1491164735 [Homo sapiens]

Variant type:: DELINS
Alleles:: TCTC>-,TC [Show Flanks]
Chromosome:: 20:63049251 (GRCh38)
20:61680603 (GRCh37)
Canonical SPDI:: NC_000020.11:63049249:CTCTC:C,NC_000020.11:63049249:CTCTC:CTC
Gene:: LINC01749 (Varview), LINC01056 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: CTC=0./0 (ALFA)
HGVS:: NC_000020.11:g.63049251_63049254del, NC_000020.11:g.63049251TC[1], NC_000020.10:g.61680603_61680606del, NC_000020.10:g.61680603TC[1]

Select item 14909382643.

rs1490938264 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 20:63043413 (GRCh38)
20:61674765 (GRCh37)
Canonical SPDI:: NC_000020.11:63043412:C:A
Gene:: LINC01749 (Varview), LINC01056 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000015/4 (TOPMED)
HGVS:: NC_000020.11:g.63043413C>A, NC_000020.10:g.61674765C>A

Select item 14908694514.

rs1490869451 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 20:63049710 (GRCh38)
20:61681062 (GRCh37)
Canonical SPDI:: NC_000020.11:63049709:G:C
Gene:: LINC01749 (Varview), LINC01056 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.63049710G>C, NC_000020.10:g.61681062G>C

Select item 14908422255.

rs1490842225 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 20:63050545 (GRCh38)
20:61681897 (GRCh37)
Canonical SPDI:: NC_000020.11:63050544:C:G
Gene:: LINC01749 (Varview), LINC01056 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000015/4 (TOPMED)
G=0.000021/3 (GnomAD)
HGVS:: NC_000020.11:g.63050545C>G, NC_000020.10:g.61681897C>G

Select item 14907980276.

rs1490798027 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 20:63044276 (GRCh38)
20:61675628 (GRCh37)
Canonical SPDI:: NC_000020.11:63044275:T:C
Gene:: LINC01749 (Varview), LINC01056 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000020.11:g.63044276T>C, NC_000020.10:g.61675628T>C

Select item 14902287097.

rs1490228709 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 20:63039820 (GRCh38)
20:61671172 (GRCh37)
Canonical SPDI:: NC_000020.11:63039819:T:C,NC_000020.11:63039819:T:G
Gene:: LINC01749 (Varview), LINC01056 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000066/1 (ALFA)
C=0.000014/2 (GnomAD)
C=0.000223/1 (Estonian)
HGVS:: NC_000020.11:g.63039820T>C, NC_000020.11:g.63039820T>G, NC_000020.10:g.61671172T>C, NC_000020.10:g.61671172T>G

Select item 14902062808.

rs1490206280 [Homo sapiens]

Variant type:: DELINS
Alleles:: GGCAC>- [Show Flanks]
Chromosome:: 20:63037954 (GRCh38)
20:61669306 (GRCh37)
Canonical SPDI:: NC_000020.11:63037949:GCACGGCAC:GCAC
Gene:: LINC01749 (Varview), LINC00029 (Varview), LINC01056 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by cluster
MAF:: -=0.000014/2 (GnomAD)
HGVS:: NC_000020.11:g.63037954_63037958del, NC_000020.10:g.61669306_61669310del

Select item 14898542829.

rs1489854282 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 20:63053214 (GRCh38)
20:61684566 (GRCh37)
Canonical SPDI:: NC_000020.11:63053213:C:A
Gene:: LINC01749 (Varview), LINC01056 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000122/2 (ALFA)
A=0.000034/9 (TOPMED)
A=0.000036/5 (GnomAD)
A=0.000223/1 (Estonian)
HGVS:: NC_000020.11:g.63053214C>A, NC_000020.10:g.61684566C>A, NR_033369.1:n.830C>A

Select item 148983886510.

rs1489838865 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 20:63051098 (GRCh38)
20:61682450 (GRCh37)
Canonical SPDI:: NC_000020.11:63051097:C:T
Gene:: LINC01749 (Varview), LINC01056 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: T=0.000008/1 (GnomAD)
HGVS:: NC_000020.11:g.63051098C>T, NC_000020.10:g.61682450C>T

Select item 148981927911.

rs1489819279 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 20:63037254 (GRCh38)
20:61668606 (GRCh37)
Canonical SPDI:: NC_000020.11:63037253:C:G,NC_000020.11:63037253:C:T
Gene:: LINC01749 (Varview), LINC00029 (Varview), LINC01056 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000042/11 (TOPMED)
HGVS:: NC_000020.11:g.63037254C>G, NC_000020.11:g.63037254C>T, NC_000020.10:g.61668606C>G, NC_000020.10:g.61668606C>T

Select item 148972375912.

rs1489723759 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G,T [Show Flanks]
Chromosome:: 20:63043934 (GRCh38)
20:61675286 (GRCh37)
Canonical SPDI:: NC_000020.11:63043933:C:A,NC_000020.11:63043933:C:G,NC_000020.11:63043933:C:T
Gene:: LINC01749 (Varview), LINC01056 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.00251/42 (TOMMO)
G=0.02053/60 (KOREAN)
HGVS:: NC_000020.11:g.63043934C>A, NC_000020.11:g.63043934C>G, NC_000020.11:g.63043934C>T, NC_000020.10:g.61675286C>A, NC_000020.10:g.61675286C>G, NC_000020.10:g.61675286C>T

Select item 148927335113.

rs1489273351 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 20:63042060 (GRCh38)
20:61673412 (GRCh37)
Canonical SPDI:: NC_000020.11:63042059:G:A
Gene:: LINC01749 (Varview), LINC01056 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000020.11:g.63042060G>A, NC_000020.10:g.61673412G>A

Select item 148921865914.

rs1489218659 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 20:63046807 (GRCh38)
20:61678159 (GRCh37)
Canonical SPDI:: NC_000020.11:63046806:A:G
Gene:: LINC01749 (Varview), LINC01056 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000020.11:g.63046807A>G, NC_000020.10:g.61678159A>G

Select item 148897279315.

rs1488972793 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 20:63050356 (GRCh38)
20:61681708 (GRCh37)
Canonical SPDI:: NC_000020.11:63050355:A:G
Gene:: LINC01749 (Varview), LINC01056 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: G=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.63050356A>G, NC_000020.10:g.61681708A>G

Select item 148892885616.

rs1488928856 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 20:63048734 (GRCh38)
20:61680086 (GRCh37)
Canonical SPDI:: NC_000020.11:63048733:C:T
Gene:: LINC01749 (Varview), LINC01056 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000020.11:g.63048734C>T, NC_000020.10:g.61680086C>T

Select item 148890335417.

rs1488903354 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->TAACTAGGA [Show Flanks]
Chromosome:: 20:63036490 (GRCh38)
20:61667843 (GRCh37)
Canonical SPDI:: NC_000020.11:63036490:TAACTAGGA:TAACTAGGATAACTAGGA
Gene:: LINC01749 (Varview), LINC00029 (Varview), LINC01056 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TAACTAGGATAACTAGGA=0./0 (ALFA)
TAACTAGGA=0.000011/3 (TOPMED)
TAACTAGGA=0.000014/2 (GnomAD)
HGVS:: NC_000020.11:g.63036491_63036499dup, NC_000020.10:g.61667843_61667851dup, NM_022099.3:c.-494_-486dup, NM_022099.2:c.-494_-486dup, NR_028295.1:n.530_538dup

Select item 148877442318.

rs1488774423 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 20:63049832 (GRCh38)
20:61681184 (GRCh37)
Canonical SPDI:: NC_000020.11:63049831:T:G
Gene:: LINC01749 (Varview), LINC01056 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000026/7 (TOPMED)
HGVS:: NC_000020.11:g.63049832T>G, NC_000020.10:g.61681184T>G

Select item 148866143319.

rs1488661433 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 20:63049216 (GRCh38)
20:61680568 (GRCh37)
Canonical SPDI:: NC_000020.11:63049215:T:C
Gene:: LINC01749 (Varview), LINC01056 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0.00017/2 (ALFA)
T=0.5/2 (SGDP_PRJ)
HGVS:: NC_000020.11:g.63049216T>C, NC_000020.10:g.61680568T>C

Select item 148795981320.

rs1487959813 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 20:63053944 (GRCh38)
20:61685296 (GRCh37)
Canonical SPDI:: NC_000020.11:63053943:G:C
Gene:: LINC01749 (Varview), LINC01056 (Varview)
Functional Consequence:: 500B_downstream_variant,intron_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000043/6 (GnomAD)
C=0.000053/14 (TOPMED)
HGVS:: NC_000020.11:g.63053944G>C, NC_000020.10:g.61685296G>C

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