SNP Links for Gene (Select 100144604) - SNP

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Select item 14903937861.

rs1490393786 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:92570441 (GRCh38)
15:93113671 (GRCh37)
Canonical SPDI:: NC_000015.10:92570440:G:A
Gene:: LINC00930 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: A=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.92570441G>A, NC_000015.9:g.93113671G>A

Select item 14903889942.

rs1490388994 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 15:92568198 (GRCh38)
15:93111428 (GRCh37)
Canonical SPDI:: NC_000015.10:92568197:C:A,NC_000015.10:92568197:C:G
Gene:: LINC00930 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
HGVS:: NC_000015.10:g.92568198C>A, NC_000015.10:g.92568198C>G, NC_000015.9:g.93111428C>A, NC_000015.9:g.93111428C>G, NR_021493.1:n.1382G>T, NR_021493.1:n.1382G>C

Select item 14903631033.

rs1490363103 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 15:92568506 (GRCh38)
15:93111736 (GRCh37)
Canonical SPDI:: NC_000015.10:92568505:C:A,NC_000015.10:92568505:C:T
Gene:: LINC00930 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000108/2 (ALFA)
A=0.000014/2 (GnomAD)
HGVS:: NC_000015.10:g.92568506C>A, NC_000015.10:g.92568506C>T, NC_000015.9:g.93111736C>A, NC_000015.9:g.93111736C>T

Select item 14902310894.

rs1490231089 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:92571312 (GRCh38)
15:93114542 (GRCh37)
Canonical SPDI:: NC_000015.10:92571311:G:A
Gene:: LINC00930 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000015/4 (TOPMED)
HGVS:: NC_000015.10:g.92571312G>A, NC_000015.9:g.93114542G>A, NR_021493.1:n.952C>T

Select item 14886234805.

rs1488623480 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:92572669 (GRCh38)
15:93115899 (GRCh37)
Canonical SPDI:: NC_000015.10:92572668:A:G
Gene:: LINC00930 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.92572669A>G, NC_000015.9:g.93115899A>G

Select item 14877551686.

rs1487755168 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 15:92568167 (GRCh38)
15:93111397 (GRCh37)
Canonical SPDI:: NC_000015.10:92568166:G:C,NC_000015.10:92568166:G:T
Gene:: LINC00930 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.92568167G>C, NC_000015.10:g.92568167G>T, NC_000015.9:g.93111397G>C, NC_000015.9:g.93111397G>T, NR_021493.1:n.1413C>G, NR_021493.1:n.1413C>A

Select item 14869943147.

rs1486994314 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 15:92569922 (GRCh38)
15:93113152 (GRCh37)
Canonical SPDI:: NC_000015.10:92569921:G:C
Gene:: LINC00930 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.92569922G>C, NC_000015.9:g.93113152G>C

Select item 14868733978.

rs1486873397 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 15:92573684 (GRCh38)
15:93116914 (GRCh37)
Canonical SPDI:: NC_000015.10:92573683:G:C
Gene:: LINC00930 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
C=0.000035/1 (TOMMO)
HGVS:: NC_000015.10:g.92573684G>C, NC_000015.9:g.93116914G>C

Select item 14868571619.

rs1486857161 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTGT>- [Show Flanks]
Chromosome:: 15:92569442 (GRCh38)
15:93112672 (GRCh37)
Canonical SPDI:: NC_000015.10:92569438:TGTTTGT:TGT
Gene:: LINC00930 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: TGT=0./0 (ALFA)
-=0.000019/5 (TOPMED)
HGVS:: NC_000015.10:g.92569442_92569445del, NC_000015.9:g.93112672_93112675del

Select item 148639097310.

rs1486390973 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 15:92569804 (GRCh38)
15:93113035 (GRCh37)
Canonical SPDI:: NC_000015.10:92569804:AA:AAA
Gene:: LINC00930 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAA=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.92569806dup, NC_000015.9:g.93113036dup

Select item 148633945211.

rs1486339452 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: 15:92570751 (GRCh38)
15:93113981 (GRCh37)
Canonical SPDI:: NC_000015.10:92570750:TTTT:TTT
Gene:: LINC00930 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.92570754del, NC_000015.9:g.93113984del

Select item 148572537612.

rs1485725376 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 15:92571709 (GRCh38)
15:93114939 (GRCh37)
Canonical SPDI:: NC_000015.10:92571708:A:G,NC_000015.10:92571708:A:T
Gene:: LINC00930 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.92571709A>G, NC_000015.10:g.92571709A>T, NC_000015.9:g.93114939A>G, NC_000015.9:g.93114939A>T, NR_021493.1:n.555T>C, NR_021493.1:n.555T>A

Select item 148427845013.

rs1484278450 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:92572508 (GRCh38)
15:93115738 (GRCh37)
Canonical SPDI:: NC_000015.10:92572507:T:C
Gene:: LINC00930 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.92572508T>C, NC_000015.9:g.93115738T>C

Select item 148379476314.

rs1483794763 [Homo sapiens]

Variant type:: DELINS
Alleles:: CTT>- [Show Flanks]
Chromosome:: 15:92567397 (GRCh38)
15:93110627 (GRCh37)
Canonical SPDI:: NC_000015.10:92567391:TTCTTCTT:TTCTT
Gene:: LINC00930 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTCTT=0./0 (ALFA)
-=0.000008/2 (TOPMED)
-=0.001092/2 (Korea1K)
-=0.002194/37 (TOMMO)
HGVS:: NC_000015.10:g.92567394CTT[1], NC_000015.9:g.93110624CTT[1]

Select item 148374256015.

rs1483742560 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:92568480 (GRCh38)
15:93111710 (GRCh37)
Canonical SPDI:: NC_000015.10:92568479:C:T
Gene:: LINC00930 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000015.10:g.92568480C>T, NC_000015.9:g.93111710C>T

Select item 148368140716.

rs1483681407 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 15:92568503 (GRCh38)
15:93111733 (GRCh37)
Canonical SPDI:: NC_000015.10:92568502:G:C
Gene:: LINC00930 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000015.10:g.92568503G>C, NC_000015.9:g.93111733G>C

Select item 148363177817.

rs1483631778 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:92569585 (GRCh38)
15:93112815 (GRCh37)
Canonical SPDI:: NC_000015.10:92569584:G:A
Gene:: LINC00930 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000015.10:g.92569585G>A, NC_000015.9:g.93112815G>A

Select item 148353870118.

rs1483538701 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 15:92571249 (GRCh38)
15:93114479 (GRCh37)
Canonical SPDI:: NC_000015.10:92571248:G:T
Gene:: LINC00930 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.92571249G>T, NC_000015.9:g.93114479G>T, NR_021493.1:n.1015C>A

Select item 148216446219.

rs1482164462 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 15:92569309 (GRCh38)
15:93112539 (GRCh37)
Canonical SPDI:: NC_000015.10:92569308:T:A,NC_000015.10:92569308:T:C
Gene:: LINC00930 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.92569309T>A, NC_000015.10:g.92569309T>C, NC_000015.9:g.93112539T>A, NC_000015.9:g.93112539T>C

Select item 148076807020.

rs1480768070 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:92573460 (GRCh38)
15:93116690 (GRCh37)
Canonical SPDI:: NC_000015.10:92573459:C:T
Gene:: LINC00930 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000021/3 (GnomAD)
HGVS:: NC_000015.10:g.92573460C>T, NC_000015.9:g.93116690C>T

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