SNP Links for Gene (Select 100169752) - SNP

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Items: 1 to 20 of 1522

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Select item 14907418061.

rs1490741806 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 10:125577103 (GRCh38)
10:127265672 (GRCh37)
Canonical SPDI:: NC_000010.11:125577102:G:T
Gene:: TEX36 (Varview), TEX36-AS1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000010.11:g.125577103G>T, NC_000010.10:g.127265672G>T

Select item 14902731282.

rs1490273128 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 10:125572747 (GRCh38)
10:127261316 (GRCh37)
Canonical SPDI:: NC_000010.11:125572746:C:G
Gene:: TEX36-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
G=0.000015/4 (TOPMED)
HGVS:: NC_000010.11:g.125572747C>G, NC_000010.10:g.127261316C>G

Select item 14899501823.

rs1489950182 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:125578467 (GRCh38)
10:127267036 (GRCh37)
Canonical SPDI:: NC_000010.11:125578466:G:A
Gene:: TEX36 (Varview), TEX36-AS1 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000015/4 (TOPMED)
HGVS:: NC_000010.11:g.125578467G>A, NC_000010.10:g.127267036G>A

Select item 14891886034.

rs1489188603 [Homo sapiens]

Variant type:: DEL
Alleles:: AT>- [Show Flanks]
Chromosome:: 10:125572828 (GRCh38)
10:127261397 (GRCh37)
Canonical SPDI:: NC_000010.11:125572827:AT:
Gene:: TEX36-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency
MAF:: -=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.125572828_125572829del, NC_000010.10:g.127261397_127261398del

Select item 14891730085.

rs1489173008 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 10:125576910 (GRCh38)
10:127265479 (GRCh37)
Canonical SPDI:: NC_000010.11:125576909:G:C
Gene:: TEX36 (Varview), TEX36-AS1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD_exomes)
HGVS:: NC_000010.11:g.125576910G>C, NC_000010.10:g.127265479G>C

Select item 14891091246.

rs1489109124 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 10:125573850 (GRCh38)
10:127262419 (GRCh37)
Canonical SPDI:: NC_000010.11:125573849:G:T
Gene:: TEX36-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.125573850G>T, NC_000010.10:g.127262419G>T

Select item 14889831257.

rs1488983125 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:125572907 (GRCh38)
10:127261476 (GRCh37)
Canonical SPDI:: NC_000010.11:125572906:A:G
Gene:: TEX36-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000010.11:g.125572907A>G, NC_000010.10:g.127261476A>G

Select item 14888735738.

rs1488873573 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 10:125576793 (GRCh38)
10:127265362 (GRCh37)
Canonical SPDI:: NC_000010.11:125576792:G:T
Gene:: TEX36 (Varview), TEX36-AS1 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,missense_variant,coding_sequence_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD_exomes)
T=0.000011/3 (TOPMED)
HGVS:: NC_000010.11:g.125576793G>T, NC_000010.10:g.127265362G>T, NM_001318133.2:c.346C>A, NM_001318133.1:c.346C>A, NP_001305062.1:p.Pro116Thr

Select item 14875202029.

rs1487520202 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 10:125576639 (GRCh38)
10:127265208 (GRCh37)
Canonical SPDI:: NC_000010.11:125576638:G:T
Gene:: TEX36 (Varview), TEX36-AS1 (Varview)
Functional Consequence:: 3_prime_UTR_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000021/3 (GnomAD)
T=0.000026/7 (TOPMED)
HGVS:: NC_000010.11:g.125576639G>T, NC_000010.10:g.127265208G>T, NM_001318133.2:c.*110C>A, NM_001318133.1:c.*110C>A

Select item 148747287410.

rs1487472874 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:125574867 (GRCh38)
10:127263436 (GRCh37)
Canonical SPDI:: NC_000010.11:125574866:G:A
Gene:: TEX36-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.125574867G>A, NC_000010.10:g.127263436G>A

Select item 148726736411.

rs1487267364 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:125573041 (GRCh38)
10:127261610 (GRCh37)
Canonical SPDI:: NC_000010.11:125573040:A:G
Gene:: TEX36-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.125573041A>G, NC_000010.10:g.127261610A>G

Select item 148674018812.

rs1486740188 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:125574996 (GRCh38)
10:127263565 (GRCh37)
Canonical SPDI:: NC_000010.11:125574995:C:T
Gene:: TEX36-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000019/5 (TOPMED)
HGVS:: NC_000010.11:g.125574996C>T, NC_000010.10:g.127263565C>T

Select item 148661244313.

rs1486612443 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:125573756 (GRCh38)
10:127262325 (GRCh37)
Canonical SPDI:: NC_000010.11:125573755:C:T
Gene:: TEX36-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000010.11:g.125573756C>T, NC_000010.10:g.127262325C>T

Select item 148593234114.

rs1485932341 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 10:125576973 (GRCh38)
10:127265542 (GRCh37)
Canonical SPDI:: NC_000010.11:125576972:C:G
Gene:: TEX36 (Varview), TEX36-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000019/5 (TOPMED)
HGVS:: NC_000010.11:g.125576973C>G, NC_000010.10:g.127265542C>G

Select item 148570618115.

rs1485706181 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:125573665 (GRCh38)
10:127262234 (GRCh37)
Canonical SPDI:: NC_000010.11:125573664:C:T
Gene:: TEX36-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.125573665C>T, NC_000010.10:g.127262234C>T

Select item 148533842416.

rs1485338424 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:125578873 (GRCh38)
10:127267442 (GRCh37)
Canonical SPDI:: NC_000010.11:125578872:G:A
Gene:: TEX36 (Varview), TEX36-AS1 (Varview)
Functional Consequence:: downstream_transcript_variant,intron_variant,500B_downstream_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.125578873G>A, NC_000010.10:g.127267442G>A

Select item 148447932817.

rs1484479328 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 10:125576877 (GRCh38)
10:127265446 (GRCh37)
Canonical SPDI:: NC_000010.11:125576876:G:A,NC_000010.11:125576876:G:C,NC_000010.11:125576876:G:T
Gene:: TEX36 (Varview), TEX36-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
HGVS:: NC_000010.11:g.125576877G>A, NC_000010.11:g.125576877G>C, NC_000010.11:g.125576877G>T, NC_000010.10:g.127265446G>A, NC_000010.10:g.127265446G>C, NC_000010.10:g.127265446G>T

Select item 148442775918.

rs1484427759 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:125575905 (GRCh38)
10:127264474 (GRCh37)
Canonical SPDI:: NC_000010.11:125575904:A:G
Gene:: TEX36-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000015/4 (TOPMED)
HGVS:: NC_000010.11:g.125575905A>G, NC_000010.10:g.127264474A>G, NR_023362.1:n.320A>G

Select item 148421871919.

rs1484218719 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 10:125573236 (GRCh38)
10:127261805 (GRCh37)
Canonical SPDI:: NC_000010.11:125573235:G:C
Gene:: TEX36-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.125573236G>C, NC_000010.10:g.127261805G>C

Select item 148350730120.

rs1483507301 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 10:125575788 (GRCh38)
10:127264357 (GRCh37)
Canonical SPDI:: NC_000010.11:125575787:G:C,NC_000010.11:125575787:G:T
Gene:: TEX36-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000010.11:g.125575788G>C, NC_000010.11:g.125575788G>T, NC_000010.10:g.127264357G>C, NC_000010.10:g.127264357G>T

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