SNP Links for Gene (Select 100216479) - SNP

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Select item 14910800611.

rs1491080061 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CTG [Show Flanks]
Chromosome:: 2:130428058 (GRCh38)
2:131185632 (GRCh37)
Canonical SPDI:: NC_000002.12:130428058:TG:TGCTG
Gene:: FAR2P2 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: TGCTG=0.000169/2 (ALFA)
TGC=0.00003/4 (GnomAD)
HGVS:: NC_000002.12:g.130428060_130428061insCTG, NC_000002.11:g.131185633_131185634insCTG, NG_045031.1:g.430_431insCTG, NR_046258.1:n.488_489insGCA, NR_046259.1:n.488_489insGCA, NR_046260.1:n.488_489insGCA

Select item 14907892952.

rs1490789295 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 2:130428744 (GRCh38)
2:131186317 (GRCh37)
Canonical SPDI:: NC_000002.12:130428743:C:G,NC_000002.12:130428743:C:T
Gene:: FAR2P2 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.130428744C>G, NC_000002.12:g.130428744C>T, NC_000002.11:g.131186317C>G, NC_000002.11:g.131186317C>T, NG_045031.1:g.1114C>G, NG_045031.1:g.1114C>T

Select item 14907871903.

rs1490787190 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 2:130419670 (GRCh38)
2:131177243 (GRCh37)
Canonical SPDI:: NC_000002.12:130419669:A:G
Gene:: FAR2P2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000002.12:g.130419670A>G, NC_000002.11:g.131177243A>G

Select item 14907533634.

rs1490753363 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 2:130429295 (GRCh38)
2:131186868 (GRCh37)
Canonical SPDI:: NC_000002.12:130429294:G:A,NC_000002.12:130429294:G:C
Gene:: FAR2P2 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000002.12:g.130429295G>A, NC_000002.12:g.130429295G>C, NC_000002.11:g.131186868G>A, NC_000002.11:g.131186868G>C, NG_045031.1:g.1665G>A, NG_045031.1:g.1665G>C

Select item 14906884025.

rs1490688402 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 2:130427911 (GRCh38)
2:131185484 (GRCh37)
Canonical SPDI:: NC_000002.12:130427910:C:A,NC_000002.12:130427910:C:T
Gene:: FAR2P2 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000011/3 (TOPMED)
T=0.000342/1 (KOREAN)
HGVS:: NC_000002.12:g.130427911C>A, NC_000002.12:g.130427911C>T, NC_000002.11:g.131185484C>A, NC_000002.11:g.131185484C>T, NG_045031.1:g.281C>A, NG_045031.1:g.281C>T, NR_046258.1:n.636G>T, NR_046258.1:n.636G>A, NR_046259.1:n.636G>T, NR_046259.1:n.636G>A, NR_046260.1:n.636G>T, NR_046260.1:n.636G>A

Select item 14905245216.

rs1490524521 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 2:130428398 (GRCh38)
2:131185971 (GRCh37)
Canonical SPDI:: NC_000002.12:130428397:G:A,NC_000002.12:130428397:G:C
Gene:: FAR2P2 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000002.12:g.130428398G>A, NC_000002.12:g.130428398G>C, NC_000002.11:g.131185971G>A, NC_000002.11:g.131185971G>C, NG_045031.1:g.768G>A, NG_045031.1:g.768G>C, NR_046258.1:n.149C>T, NR_046258.1:n.149C>G, NR_046259.1:n.149C>T, NR_046259.1:n.149C>G, NR_046260.1:n.149C>T, NR_046260.1:n.149C>G

Select item 14904776027.

rs1490477602 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:130427261 (GRCh38)
2:131184834 (GRCh37)
Canonical SPDI:: NC_000002.12:130427260:C:T
Gene:: FAR2P2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.000084/1 (ALFA)
T=0.000033/4 (GnomAD)
HGVS:: NC_000002.12:g.130427261C>T, NC_000002.11:g.131184834C>T

Select item 14904203868.

rs1490420386 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 2:130423809 (GRCh38)
2:131181383 (GRCh37)
Canonical SPDI:: NC_000002.12:130423809:T:TT
Gene:: FAR2P2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TT=0.000071/1 (ALFA)
T=0.000023/6 (TOPMED)
T=0.00003/4 (GnomAD)
HGVS:: NC_000002.12:g.130423810dup, NC_000002.11:g.131181383dup

Select item 14903685549.

rs1490368554 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 2:130424554 (GRCh38)
2:131182127 (GRCh37)
Canonical SPDI:: NC_000002.12:130424553:G:A,NC_000002.12:130424553:G:C
Gene:: FAR2P2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.130424554G>A, NC_000002.12:g.130424554G>C, NC_000002.11:g.131182127G>A, NC_000002.11:g.131182127G>C

Select item 149019858810.

rs1490198588 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:130427497 (GRCh38)
2:131185070 (GRCh37)
Canonical SPDI:: NC_000002.12:130427496:T:C
Gene:: FAR2P2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0.000061/1 (ALFA)
C=0.000062/8 (GnomAD)
HGVS:: NC_000002.12:g.130427497T>C, NC_000002.11:g.131185070T>C

Select item 149018898411.

rs1490188984 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 2:130424170 (GRCh38)
2:131181743 (GRCh37)
Canonical SPDI:: NC_000002.12:130424169:T:C,NC_000002.12:130424169:T:G
Gene:: FAR2P2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000002.12:g.130424170T>C, NC_000002.12:g.130424170T>G, NC_000002.11:g.131181743T>C, NC_000002.11:g.131181743T>G

Select item 149015922812.

rs1490159228 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 2:130425863 (GRCh38)
2:131183436 (GRCh37)
Canonical SPDI:: NC_000002.12:130425862:A:G,NC_000002.12:130425862:A:T
Gene:: FAR2P2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000002.12:g.130425863A>G, NC_000002.12:g.130425863A>T, NC_000002.11:g.131183436A>G, NC_000002.11:g.131183436A>T

Select item 148998848113.

rs1489988481 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:130426560 (GRCh38)
2:131184133 (GRCh37)
Canonical SPDI:: NC_000002.12:130426559:G:A
Gene:: FAR2P2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.130426560G>A, NC_000002.11:g.131184133G>A

Select item 148986594014.

rs1489865940 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 2:130417549 (GRCh38)
2:131175122 (GRCh37)
Canonical SPDI:: NC_000002.12:130417548:C:A,NC_000002.12:130417548:C:G
Gene:: FAR2P2 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000002.12:g.130417549C>A, NC_000002.12:g.130417549C>G, NC_000002.11:g.131175122C>A, NC_000002.11:g.131175122C>G, NR_046258.1:n.2059G>T, NR_046258.1:n.2059G>C, NR_046259.1:n.1961G>T, NR_046259.1:n.1961G>C, NR_046260.1:n.1836G>T, NR_046260.1:n.1836G>C

Select item 148980749215.

rs1489807492 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 2:130428435 (GRCh38)
2:131186008 (GRCh37)
Canonical SPDI:: NC_000002.12:130428434:T:C
Gene:: FAR2P2 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.130428435T>C, NC_000002.11:g.131186008T>C, NG_045031.1:g.805T>C, NR_046258.1:n.112A>G, NR_046259.1:n.112A>G, NR_046260.1:n.112A>G

Select item 148977927316.

rs1489779273 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 2:130419350 (GRCh38)
2:131176923 (GRCh37)
Canonical SPDI:: NC_000002.12:130419349:G:A
Gene:: FAR2P2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0.000169/2 (ALFA)
A=0.000072/10 (GnomAD)
HGVS:: NC_000002.12:g.130419350G>A, NC_000002.11:g.131176923G>A

Select item 148975875517.

rs1489758755 has merged into rs528874370 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>-,GG [Show Flanks]
Chromosome:: 2:130425357 (GRCh38)
2:131182930 (GRCh37)
Canonical SPDI:: NC_000002.12:130425356:GGGGGGG:GGGGGG,NC_000002.12:130425356:GGGGGGG:GGGGGGGG
Gene:: FAR2P2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGGGGGGG=0./0 (ALFA)
-=0.01811/91 (1000Genomes)
HGVS:: NC_000002.12:g.130425363del, NC_000002.12:g.130425363dup, NC_000002.11:g.131182936del, NC_000002.11:g.131182936dup

Select item 148972794718.

rs1489727947 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:130426151 (GRCh38)
2:131183724 (GRCh37)
Canonical SPDI:: NC_000002.12:130426150:C:T
Gene:: FAR2P2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000002.12:g.130426151C>T, NC_000002.11:g.131183724C>T

Select item 148966575019.

rs1489665750 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 2:130417613 (GRCh38)
2:131175186 (GRCh37)
Canonical SPDI:: NC_000002.12:130417612:A:T
Gene:: FAR2P2 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000002.12:g.130417613A>T, NC_000002.11:g.131175186A>T, NR_046258.1:n.1995T>A, NR_046259.1:n.1897T>A, NR_046260.1:n.1772T>A

Select item 148954671220.

rs1489546712 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 2:130418020 (GRCh38)
2:131175593 (GRCh37)
Canonical SPDI:: NC_000002.12:130418019:C:T
Gene:: FAR2P2 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000015/4 (TOPMED)
T=0.000021/3 (GnomAD)
HGVS:: NC_000002.12:g.130418020C>T, NC_000002.11:g.131175593C>T, NR_046258.1:n.1588G>A, NR_046259.1:n.1490G>A, NR_046260.1:n.1365G>A

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