SNP Links for Gene (Select 100271722) - SNP

Links from Gene

Items: 1 to 20 of 1789

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Select item 14915717041.

rs1491571704 [Homo sapiens]

Variant type:: INS
Alleles:: ->T [Show Flanks]
Chromosome:: 22:46044308 (GRCh38)
22:46440189 (GRCh37)
Canonical SPDI:: NC_000022.11:46044308::T
Gene:: LINC00899 (Varview), LOC124905135 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0.000084/1 (ALFA)
T=0.000019/5 (TOPMED)
HGVS:: NC_000022.11:g.46044308_46044309insT, NC_000022.10:g.46440188_46440189insT

Select item 14915007022.

rs1491500702 [Homo sapiens]

Variant type:: DELINS
Alleles:: CC>- [Show Flanks]
Chromosome:: 22:46044309 (GRCh38)
22:46440189 (GRCh37)
Canonical SPDI:: NC_000022.11:46044307:CCC:C
Gene:: LINC00899 (Varview), LOC124905135 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency
MAF:: -=0.000014/2 (GnomAD)
HGVS:: NC_000022.11:g.46044309_46044310del, NC_000022.10:g.46440189_46440190del

Select item 14914584673.

rs1491458467 has merged into rs34570633 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAAAAA>-,A,AA,AAA,AAAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 22:46042511 (GRCh38)
22:46438391 (GRCh37)
Canonical SPDI:: NC_000022.11:46042501:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAA,NC_000022.11:46042501:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAA,NC_000022.11:46042501:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000022.11:46042501:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000022.11:46042501:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000022.11:46042501:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000022.11:46042501:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000022.11:46042501:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000022.11:46042501:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000022.11:46042501:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000022.11:46042501:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000022.11:46042501:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000022.11:46042501:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000022.11:46042501:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000022.11:46042501:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000022.11:46042501:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000022.11:46042501:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000022.11:46042501:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000022.11:46042501:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000022.11:46042501:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000022.11:46042501:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000022.11:46042501:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000022.11:46042501:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000022.11:46042501:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000022.11:46042501:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000022.11:46042501:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000022.11:46042501:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000022.11:46042501:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000022.11:46042501:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000022.11:46042501:AAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: LINC00899 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAA=0./0 (ALFA)
HGVS:: NC_000022.11:g.46042511_46042524del, NC_000022.11:g.46042512_46042524del, NC_000022.11:g.46042513_46042524del, NC_000022.11:g.46042514_46042524del, NC_000022.11:g.46042515_46042524del, NC_000022.11:g.46042516_46042524del, NC_000022.11:g.46042517_46042524del, NC_000022.11:g.46042518_46042524del, NC_000022.11:g.46042519_46042524del, NC_000022.11:g.46042520_46042524del, NC_000022.11:g.46042521_46042524del, NC_000022.11:g.46042522_46042524del, NC_000022.11:g.46042523_46042524del, NC_000022.11:g.46042524del, NC_000022.11:g.46042524dup, NC_000022.11:g.46042523_46042524dup, NC_000022.11:g.46042522_46042524dup, NC_000022.11:g.46042521_46042524dup, NC_000022.11:g.46042520_46042524dup, NC_000022.11:g.46042519_46042524dup, NC_000022.11:g.46042518_46042524dup, NC_000022.11:g.46042517_46042524dup, NC_000022.11:g.46042516_46042524dup, NC_000022.11:g.46042515_46042524dup, NC_000022.11:g.46042514_46042524dup, NC_000022.11:g.46042507_46042524dup, NC_000022.11:g.46042504_46042524dup, NC_000022.11:g.46042502_46042524dup, NC_000022.11:g.46042524_46042525insAAAAAAAAAAAAAAAAAAAAAAAAAAAA, NC_000022.11:g.46042502_46042524A[24]GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA[1], NC_000022.10:g.46438391_46438404del, NC_000022.10:g.46438392_46438404del, NC_000022.10:g.46438393_46438404del, NC_000022.10:g.46438394_46438404del, NC_000022.10:g.46438395_46438404del, NC_000022.10:g.46438396_46438404del, NC_000022.10:g.46438397_46438404del, NC_000022.10:g.46438398_46438404del, NC_000022.10:g.46438399_46438404del, NC_000022.10:g.46438400_46438404del, NC_000022.10:g.46438401_46438404del, NC_000022.10:g.46438402_46438404del, NC_000022.10:g.46438403_46438404del, NC_000022.10:g.46438404del, NC_000022.10:g.46438404dup, NC_000022.10:g.46438403_46438404dup, NC_000022.10:g.46438402_46438404dup, NC_000022.10:g.46438401_46438404dup, NC_000022.10:g.46438400_46438404dup, NC_000022.10:g.46438399_46438404dup, NC_000022.10:g.46438398_46438404dup, NC_000022.10:g.46438397_46438404dup, NC_000022.10:g.46438396_46438404dup, NC_000022.10:g.46438395_46438404dup, NC_000022.10:g.46438394_46438404dup, NC_000022.10:g.46438387_46438404dup, NC_000022.10:g.46438384_46438404dup, NC_000022.10:g.46438382_46438404dup, NC_000022.10:g.46438404_46438405insAAAAAAAAAAAAAAAAAAAAAAAAAAAA, NC_000022.10:g.46438382_46438404A[24]GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA[1]

Select item 14912296954.

rs1491229695 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 22:46042501 (GRCh38)
22:46438381 (GRCh37)
Canonical SPDI:: NC_000022.11:46042500:CA:
Gene:: LINC00899 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0.00455/54 (ALFA)
HGVS:: NC_000022.11:g.46042501_46042502del, NC_000022.10:g.46438381_46438382del

Select item 14912083415.

rs1491208341 [Homo sapiens]

Variant type:: DEL
Alleles:: AT>- [Show Flanks]
Chromosome:: 22:46041092 (GRCh38)
22:46436972 (GRCh37)
Canonical SPDI:: NC_000022.11:46041091:AT:
Gene:: LINC00899 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000022.11:g.46041092_46041093del, NC_000022.10:g.46436972_46436973del

Select item 14902253706.

rs1490225370 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 22:46045727 (GRCh38)
22:46441607 (GRCh37)
Canonical SPDI:: NC_000022.11:46045726:A:G
Gene:: LINC00899 (Varview), LOC124905135 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.46045727A>G, NC_000022.10:g.46441607A>G

Select item 14898069357.

rs1489806935 [Homo sapiens]

Variant type:: DELINS
Alleles:: AGTTT>- [Show Flanks]
Chromosome:: 22:46040262 (GRCh38)
22:46436142 (GRCh37)
Canonical SPDI:: NC_000022.11:46040259:TTAGTTT:TT
Gene:: LINC00899 (Varview), LOC124905136 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: TT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000022.11:g.46040262_46040266del, NC_000022.10:g.46436142_46436146del, XR_007068137.1:n.3043_3047del, NR_027036.1:n.1253_1257del

Select item 14891800318.

rs1489180031 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 22:46039414 (GRCh38)
22:46435294 (GRCh37)
Canonical SPDI:: NC_000022.11:46039413:G:A
Gene:: LINC00899 (Varview), LOC124905136 (Varview)
Functional Consequence:: non_coding_transcript_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.46039414G>A, NC_000022.10:g.46435294G>A, XR_007068137.1:n.2195G>A

Select item 14887325239.

rs1488732523 [Homo sapiens]

Variant type:: DELINS
Alleles:: GAA>- [Show Flanks]
Chromosome:: 22:46042548 (GRCh38)
22:46438428 (GRCh37)
Canonical SPDI:: NC_000022.11:46042545:AAGAA:AA
Gene:: LINC00899 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AA=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000008/2 (TOPMED)
HGVS:: NC_000022.11:g.46042548_46042550del, NC_000022.10:g.46438428_46438430del

Select item 148866949710.

rs1488669497 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G,T [Show Flanks]
Chromosome:: 22:46044940 (GRCh38)
22:46440820 (GRCh37)
Canonical SPDI:: NC_000022.11:46044939:C:A,NC_000022.11:46044939:C:G,NC_000022.11:46044939:C:T
Gene:: LINC00899 (Varview), LOC124905135 (Varview)
Functional Consequence:: 2KB_upstream_variant,genic_upstream_transcript_variant,upstream_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
A=0.00016/1 (1000Genomes)
HGVS:: NC_000022.11:g.46044940C>A, NC_000022.11:g.46044940C>G, NC_000022.11:g.46044940C>T, NC_000022.10:g.46440820C>A, NC_000022.10:g.46440820C>G, NC_000022.10:g.46440820C>T, XM_047441696.1:c.-5622C>A, XM_047441696.1:c.-5622C>G, XM_047441696.1:c.-5622C>T

Select item 148850830511.

rs1488508305 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:46041885 (GRCh38)
22:46437765 (GRCh37)
Canonical SPDI:: NC_000022.11:46041884:C:T
Gene:: LINC00899 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000022.11:g.46041885C>T, NC_000022.10:g.46437765C>T

Select item 148833665912.

rs1488336659 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 22:46043955 (GRCh38)
22:46439835 (GRCh37)
Canonical SPDI:: NC_000022.11:46043954:A:C
Gene:: LINC00899 (Varview), LOC124905135 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000071/10 (GnomAD)
HGVS:: NC_000022.11:g.46043955A>C, NC_000022.10:g.46439835A>C

Select item 148791024913.

rs1487910249 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 22:46040145 (GRCh38)
22:46436025 (GRCh37)
Canonical SPDI:: NC_000022.11:46040144:T:C
Gene:: LINC00899 (Varview), LOC124905136 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000156/1 (1000Genomes)
HGVS:: NC_000022.11:g.46040145T>C, NC_000022.10:g.46436025T>C, XR_007068137.1:n.2926T>C, NR_027036.1:n.1372A>G

Select item 148757538014.

rs1487575380 [Homo sapiens]

Variant type:: DELINS
Alleles:: AACAAA>- [Show Flanks]
Chromosome:: 22:46040432 (GRCh38)
22:46436312 (GRCh37)
Canonical SPDI:: NC_000022.11:46040428:AAAAACAAA:AAA
Gene:: LINC00899 (Varview), LOC124905136 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAA=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
-=0.000546/1 (Korea1K)
HGVS:: NC_000022.11:g.46040432_46040437del, NC_000022.10:g.46436312_46436317del, XR_007068137.1:n.3213_3218del, NR_027036.1:n.1083_1088del

Select item 148688204015.

rs1486882040 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 22:46042415 (GRCh38)
22:46438295 (GRCh37)
Canonical SPDI:: NC_000022.11:46042414:A:G
Gene:: LINC00899 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000022.11:g.46042415A>G, NC_000022.10:g.46438295A>G

Select item 148658285716.

rs1486582857 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 22:46043040 (GRCh38)
22:46438920 (GRCh37)
Canonical SPDI:: NC_000022.11:46043039:A:G
Gene:: LINC00899 (Varview), LOC124905135 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000022.11:g.46043040A>G, NC_000022.10:g.46438920A>G

Select item 148623199417.

rs1486231994 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 22:46042965 (GRCh38)
22:46438845 (GRCh37)
Canonical SPDI:: NC_000022.11:46042964:G:A,NC_000022.11:46042964:G:C
Gene:: LINC00899 (Varview), LOC124905135 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000007/1 (GnomAD)
C=0.000035/1 (TOMMO)
HGVS:: NC_000022.11:g.46042965G>A, NC_000022.11:g.46042965G>C, NC_000022.10:g.46438845G>A, NC_000022.10:g.46438845G>C

Select item 148593072918.

rs1485930729 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 22:46042626 (GRCh38)
22:46438506 (GRCh37)
Canonical SPDI:: NC_000022.11:46042625:T:C,NC_000022.11:46042625:T:G
Gene:: LINC00899 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
HGVS:: NC_000022.11:g.46042626T>C, NC_000022.11:g.46042626T>G, NC_000022.10:g.46438506T>C, NC_000022.10:g.46438506T>G, NR_027036.1:n.412A>G, NR_027036.1:n.412A>C

Select item 148591161419.

rs1485911614 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 22:46041418 (GRCh38)
22:46437298 (GRCh37)
Canonical SPDI:: NC_000022.11:46041417:T:G
Gene:: LINC00899 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.46041418T>G, NC_000022.10:g.46437298T>G

Select item 148539142220.

rs1485391422 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 22:46042010 (GRCh38)
22:46437890 (GRCh37)
Canonical SPDI:: NC_000022.11:46042009:G:C,NC_000022.11:46042009:G:T
Gene:: LINC00899 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000022.11:g.46042010G>C, NC_000022.11:g.46042010G>T, NC_000022.10:g.46437890G>C, NC_000022.10:g.46437890G>T

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