SNP Links for Gene (Select 100287592) - SNP

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Select item 14906300371.

rs1490630037 [Homo sapiens]

Variant type:: DEL
Alleles:: C>- [Show Flanks]
Chromosome:: 5:50970362 (GRCh38)
5:50266196 (GRCh37)
Canonical SPDI:: NC_000005.10:50970361:C:
Gene:: LINC02106 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000011/3 (TOPMED)
HGVS:: NC_000005.10:g.50970362del, NC_000005.9:g.50266196del

Select item 14905844152.

rs1490584415 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:50969556 (GRCh38)
5:50265390 (GRCh37)
Canonical SPDI:: NC_000005.10:50969555:C:T
Gene:: LINC02106 (Varview), LOC124901181 (Varview)
Functional Consequence:: upstream_transcript_variant,non_coding_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000019/5 (TOPMED)
T=0.000029/4 (GnomAD)
HGVS:: NC_000005.10:g.50969556C>T, NC_000005.9:g.50265390C>T, NR_104653.1:n.287G>A

Select item 14903987073.

rs1490398707 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 5:50971740 (GRCh38)
5:50267574 (GRCh37)
Canonical SPDI:: NC_000005.10:50971739:G:T
Gene:: LINC02106 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.50971740G>T, NC_000005.9:g.50267574G>T

Select item 14903680314.

rs1490368031 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 5:50969691 (GRCh38)
5:50265525 (GRCh37)
Canonical SPDI:: NC_000005.10:50969690:G:A,NC_000005.10:50969690:G:C
Gene:: LINC02106 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000005.10:g.50969691G>A, NC_000005.10:g.50969691G>C, NC_000005.9:g.50265525G>A, NC_000005.9:g.50265525G>C

Select item 14902038455.

rs1490203845 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,G [Show Flanks]
Chromosome:: 5:50970664 (GRCh38)
5:50266498 (GRCh37)
Canonical SPDI:: NC_000005.10:50970663:T:A,NC_000005.10:50970663:T:G
Gene:: LINC02106 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
A=0.000043/6 (GnomAD)
A=0.000156/1 (1000Genomes)
HGVS:: NC_000005.10:g.50970664T>A, NC_000005.10:g.50970664T>G, NC_000005.9:g.50266498T>A, NC_000005.9:g.50266498T>G

Select item 14894581036.

rs1489458103 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 5:50968766 (GRCh38)
5:50264600 (GRCh37)
Canonical SPDI:: NC_000005.10:50968765:A:G
Gene:: LINC02106 (Varview), LOC124901181 (Varview)
Functional Consequence:: 500B_downstream_variant,upstream_transcript_variant,2KB_upstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000005.10:g.50968766A>G, NC_000005.9:g.50264600A>G

Select item 14881275337.

rs1488127533 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>-,TTT [Show Flanks]
Chromosome:: 5:50970874 (GRCh38)
5:50266708 (GRCh37)
Canonical SPDI:: NC_000005.10:50970869:TTTTTT:TTTT,NC_000005.10:50970869:TTTTTT:TTTTTTT
Gene:: LINC02106 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTT=0./0 (ALFA)
HGVS:: NC_000005.10:g.50970874_50970875del, NC_000005.10:g.50970875dup, NC_000005.9:g.50266708_50266709del, NC_000005.9:g.50266709dup

Select item 14871002528.

rs1487100252 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 5:50970490 (GRCh38)
5:50266324 (GRCh37)
Canonical SPDI:: NC_000005.10:50970489:G:A
Gene:: LINC02106 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.50970490G>A, NC_000005.9:g.50266324G>A

Select item 14853498279.

rs1485349827 [Homo sapiens]

Variant type:: DEL
Alleles:: A>- [Show Flanks]
Chromosome:: 5:50972007 (GRCh38)
5:50267841 (GRCh37)
Canonical SPDI:: NC_000005.10:50972006:A:
Gene:: LINC02106 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.00028/16 (GnomAD)
HGVS:: NC_000005.10:g.50972007del, NC_000005.9:g.50267841del

Select item 148513522710.

rs1485135227 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 5:50968893 (GRCh38)
5:50264727 (GRCh37)
Canonical SPDI:: NC_000005.10:50968892:CCCCC:CCCC
Gene:: LINC02106 (Varview), LOC124901181 (Varview)
Functional Consequence:: 500B_downstream_variant,upstream_transcript_variant,2KB_upstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: CCCC=0.000071/1 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000005.10:g.50968897del, NC_000005.9:g.50264731del

Select item 148400393011.

rs1484003930 has merged into rs57384878 [Homo sapiens]

Variant type:: DELINS
Alleles:: CACACACACACACACACACA>-,CA,CACA,CACACA,CACACACA,CACACACACA,CACACACACACA,CACACACACACACA,CACACACACACACACA,CACACACACACACACACA,CACACACACACACACACACACA,CACACACACACACACACACACACA [Show Flanks]
Chromosome:: 5:50972012 (GRCh38)
5:50267846 (GRCh37)
Canonical SPDI:: NC_000005.10:50972010:ACACACACACACACACACACA:A,NC_000005.10:50972010:ACACACACACACACACACACA:ACA,NC_000005.10:50972010:ACACACACACACACACACACA:ACACA,NC_000005.10:50972010:ACACACACACACACACACACA:ACACACA,NC_000005.10:50972010:ACACACACACACACACACACA:ACACACACA,NC_000005.10:50972010:ACACACACACACACACACACA:ACACACACACA,NC_000005.10:50972010:ACACACACACACACACACACA:ACACACACACACA,NC_000005.10:50972010:ACACACACACACACACACACA:ACACACACACACACA,NC_000005.10:50972010:ACACACACACACACACACACA:ACACACACACACACACA,NC_000005.10:50972010:ACACACACACACACACACACA:ACACACACACACACACACA,NC_000005.10:50972010:ACACACACACACACACACACA:ACACACACACACACACACACACA,NC_000005.10:50972010:ACACACACACACACACACACA:ACACACACACACACACACACACACA
Gene:: LINC02106 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: ACACACACACA=0./0 (ALFA)
HGVS:: NC_000005.10:g.50972012_50972031del, NC_000005.10:g.50972012CA[1], NC_000005.10:g.50972012CA[2], NC_000005.10:g.50972012CA[3], NC_000005.10:g.50972012CA[4], NC_000005.10:g.50972012CA[5], NC_000005.10:g.50972012CA[6], NC_000005.10:g.50972012CA[7], NC_000005.10:g.50972012CA[8], NC_000005.10:g.50972012CA[9], NC_000005.10:g.50972012CA[11], NC_000005.10:g.50972012CA[12], NC_000005.9:g.50267846_50267865del, NC_000005.9:g.50267846CA[1], NC_000005.9:g.50267846CA[2], NC_000005.9:g.50267846CA[3], NC_000005.9:g.50267846CA[4], NC_000005.9:g.50267846CA[5], NC_000005.9:g.50267846CA[6], NC_000005.9:g.50267846CA[7], NC_000005.9:g.50267846CA[8], NC_000005.9:g.50267846CA[9], NC_000005.9:g.50267846CA[11], NC_000005.9:g.50267846CA[12]

Select item 148338664712.

rs1483386647 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 5:50971664 (GRCh38)
5:50267498 (GRCh37)
Canonical SPDI:: NC_000005.10:50971663:A:G
Gene:: LINC02106 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.50971664A>G, NC_000005.9:g.50267498A>G

Select item 148318017413.

rs1483180174 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 5:50969020 (GRCh38)
5:50264854 (GRCh37)
Canonical SPDI:: NC_000005.10:50969019:T:C
Gene:: LINC02106 (Varview), LOC124901181 (Varview)
Functional Consequence:: 500B_downstream_variant,upstream_transcript_variant,2KB_upstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000005.10:g.50969020T>C, NC_000005.9:g.50264854T>C

Select item 148296306514.

rs1482963065 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,G [Show Flanks]
Chromosome:: 5:50971276 (GRCh38)
5:50267110 (GRCh37)
Canonical SPDI:: NC_000005.10:50971275:T:A,NC_000005.10:50971275:T:G
Gene:: LINC02106 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.50971276T>A, NC_000005.10:g.50971276T>G, NC_000005.9:g.50267110T>A, NC_000005.9:g.50267110T>G

Select item 148255267415.

rs1482552674 has merged into rs71612394 [Homo sapiens]

Variant type:: DELINS
Alleles:: TATATATATATATATATATATATATATATA>-,TATA,TATATA,TATATATA,TATATATATA,TATATATATATA,TATATATATATATA,TATATATATATATATA,TATATATATATATATATA,TATATATATATATATATATA,TATATATATATATATATATATA,TATATATATATATATATATATATA,TATATATATATATATATATATATATA,TATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATATATATATATATA,TATATATATATATATATATATATATATATATATATATATATATATATATA [Show Flanks]
Chromosome:: 5:50971982 (GRCh38)
5:50267816 (GRCh37)
Canonical SPDI:: NC_000005.10:50971973:TATATATATATATATATATATATATATATATATATATA:TATATATA,NC_000005.10:50971973:TATATATATATATATATATATATATATATATATATATA:TATATATATATA,NC_000005.10:50971973:TATATATATATATATATATATATATATATATATATATA:TATATATATATATA,NC_000005.10:50971973:TATATATATATATATATATATATATATATATATATATA:TATATATATATATATA,NC_000005.10:50971973:TATATATATATATATATATATATATATATATATATATA:TATATATATATATATATA,NC_000005.10:50971973:TATATATATATATATATATATATATATATATATATATA:TATATATATATATATATATA,NC_000005.10:50971973:TATATATATATATATATATATATATATATATATATATA:TATATATATATATATATATATA,NC_000005.10:50971973:TATATATATATATATATATATATATATATATATATATA:TATATATATATATATATATATATA,NC_000005.10:50971973:TATATATATATATATATATATATATATATATATATATA:TATATATATATATATATATATATATA,NC_000005.10:50971973:TATATATATATATATATATATATATATATATATATATA:TATATATATATATATATATATATATATA,NC_000005.10:50971973:TATATATATATATATATATATATATATATATATATATA:TATATATATATATATATATATATATATATA,NC_000005.10:50971973:TATATATATATATATATATATATATATATATATATATA:TATATATATATATATATATATATATATATATA,NC_000005.10:50971973:TATATATATATATATATATATATATATATATATATATA:TATATATATATATATATATATATATATATATATA,NC_000005.10:50971973:TATATATATATATATATATATATATATATATATATATA:TATATATATATATATATATATATATATATATATATA,NC_000005.10:50971973:TATATATATATATATATATATATATATATATATATATA:TATATATATATATATATATATATATATATATATATATATA,NC_000005.10:50971973:TATATATATATATATATATATATATATATATATATATA:TATATATATATATATATATATATATATATATATATATATATA,NC_000005.10:50971973:TATATATATATATATATATATATATATATATATATATA:TATATATATATATATATATATATATATATATATATATATATATA,NC_000005.10:50971973:TATATATATATATATATATATATATATATATATATATA:TATATATATATATATATATATATATATATATATATATATATATATA,NC_000005.10:50971973:TATATATATATATATATATATATATATATATATATATA:TATATATATATATATATATATATATATATATATATATATATATATATA,NC_000005.10:50971973:TATATATATATATATATATATATATATATATATATATA:TATATATATATATATATATATATATATATATATATATATATATATATATA,NC_000005.10:50971973:TATATATATATATATATATATATATATATATATATATA:TATATATATATATATATATATATATATATATATATATATATATATATATATA,NC_000005.10:50971973:TATATATATATATATATATATATATATATATATATATA:TATATATATATATATATATATATATATATATATATATATATATATATATATATA,NC_000005.10:50971973:TATATATATATATATATATATATATATATATATATATA:TATATATATATATATATATATATATATATATATATATATATATATATATATATATATA
Gene:: LINC02106 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TATATATA=0./0 (ALFA)
HGVS:: NC_000005.10:g.50971974TA[4], NC_000005.10:g.50971974TA[6], NC_000005.10:g.50971974TA[7], NC_000005.10:g.50971974TA[8], NC_000005.10:g.50971974TA[9], NC_000005.10:g.50971974TA[10], NC_000005.10:g.50971974TA[11], NC_000005.10:g.50971974TA[12], NC_000005.10:g.50971974TA[13], NC_000005.10:g.50971974TA[14], NC_000005.10:g.50971974TA[15], NC_000005.10:g.50971974TA[16], NC_000005.10:g.50971974TA[17], NC_000005.10:g.50971974TA[18], NC_000005.10:g.50971974TA[20], NC_000005.10:g.50971974TA[21], NC_000005.10:g.50971974TA[22], NC_000005.10:g.50971974TA[23], NC_000005.10:g.50971974TA[24], NC_000005.10:g.50971974TA[25], NC_000005.10:g.50971974TA[26], NC_000005.10:g.50971974TA[27], NC_000005.10:g.50971974TA[29], NC_000005.9:g.50267808TA[4], NC_000005.9:g.50267808TA[6], NC_000005.9:g.50267808TA[7], NC_000005.9:g.50267808TA[8], NC_000005.9:g.50267808TA[9], NC_000005.9:g.50267808TA[10], NC_000005.9:g.50267808TA[11], NC_000005.9:g.50267808TA[12], NC_000005.9:g.50267808TA[13], NC_000005.9:g.50267808TA[14], NC_000005.9:g.50267808TA[15], NC_000005.9:g.50267808TA[16], NC_000005.9:g.50267808TA[17], NC_000005.9:g.50267808TA[18], NC_000005.9:g.50267808TA[20], NC_000005.9:g.50267808TA[21], NC_000005.9:g.50267808TA[22], NC_000005.9:g.50267808TA[23], NC_000005.9:g.50267808TA[24], NC_000005.9:g.50267808TA[25], NC_000005.9:g.50267808TA[26], NC_000005.9:g.50267808TA[27], NC_000005.9:g.50267808TA[29]

Select item 148214582916.

rs1482145829 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 5:50970905 (GRCh38)
5:50266739 (GRCh37)
Canonical SPDI:: NC_000005.10:50970904:A:C
Gene:: LINC02106 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000036/5 (GnomAD)
C=0.000038/10 (TOPMED)
HGVS:: NC_000005.10:g.50970905A>C, NC_000005.9:g.50266739A>C

Select item 148211326417.

rs1482113264 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 5:50968741 (GRCh38)
5:50264575 (GRCh37)
Canonical SPDI:: NC_000005.10:50968740:G:A
Gene:: LINC02106 (Varview), LOC124901181 (Varview)
Functional Consequence:: 500B_downstream_variant,upstream_transcript_variant,2KB_upstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000005.10:g.50968741G>A, NC_000005.9:g.50264575G>A

Select item 148203894718.

rs1482038947 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:50971753 (GRCh38)
5:50267587 (GRCh37)
Canonical SPDI:: NC_000005.10:50971752:C:T
Gene:: LINC02106 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000005.10:g.50971753C>T, NC_000005.9:g.50267587C>T

Select item 148167128019.

rs1481671280 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 5:50969002 (GRCh38)
5:50264836 (GRCh37)
Canonical SPDI:: NC_000005.10:50969001:C:A
Gene:: LINC02106 (Varview), LOC124901181 (Varview)
Functional Consequence:: 2KB_upstream_variant,downstream_transcript_variant,upstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.50969002C>A, NC_000005.9:g.50264836C>A

Select item 148142453420.

rs1481424534 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 5:50970743 (GRCh38)
5:50266577 (GRCh37)
Canonical SPDI:: NC_000005.10:50970742:A:G
Gene:: LINC02106 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000005.10:g.50970743A>G, NC_000005.9:g.50266577A>G

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