SNP Links for Gene (Select 100289656) - SNP

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Select item 14907994111.

rs1490799411 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 15:28789775 (GRCh38)
15:29034921 (GRCh37)
Canonical SPDI:: NC_000015.10:28789774:C:A,NC_000015.10:28789774:C:T
Gene:: PDCD6IPP2 (Varview), LOC100289656 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000224/1 (ALFA)
T=0.000007/1 (GnomAD)
A=0.000342/1 (KOREAN)
HGVS:: NC_000015.10:g.28789775C>A, NC_000015.10:g.28789775C>T, NC_000015.9:g.29034921C>A, NC_000015.9:g.29034921C>T, NW_011332701.1:g.951781C>A, NW_011332701.1:g.951781C>T, NT_187660.1:g.1065567C>A, NT_187660.1:g.1065567C>T

Select item 14895583482.

rs1489558348 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:28788662 (GRCh38)
15:29033808 (GRCh37)
Canonical SPDI:: NC_000015.10:28788661:T:C
Gene:: PDCD6IPP2 (Varview), LOC100289656 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000011/3 (TOPMED)
HGVS:: NC_000015.10:g.28788662T>C, NC_000015.9:g.29033808T>C, NW_011332701.1:g.950668T>C, NT_187660.1:g.1064454T>C, NR_036475.2:n.165T>C

Select item 14883215823.

rs1488321582 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:28787218 (GRCh38)
15:29032364 (GRCh37)
Canonical SPDI:: NC_000015.10:28787217:C:T
Gene:: LOC100289656 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.00011/3 (TOMMO)
HGVS:: NC_000015.10:g.28787218C>T, NC_000015.9:g.29032364C>T, NW_011332701.1:g.949224C>T, NT_187660.1:g.1063010C>T

Select item 14882086184.

rs1488208618 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 15:28789206 (GRCh38)
15:29034352 (GRCh37)
Canonical SPDI:: NC_000015.10:28789205:G:C
Gene:: PDCD6IPP2 (Varview), LOC100289656 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000016/2 (GnomAD)
HGVS:: NC_000015.10:g.28789206G>C, NC_000015.9:g.29034352G>C, NW_011332701.1:g.951212G>C, NT_187660.1:g.1064998G>C, NR_036475.2:n.709G>C

Select item 14878506725.

rs1487850672 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 15:28788665 (GRCh38)
15:29033812 (GRCh37)
Canonical SPDI:: NC_000015.10:28788665:A:AA
Gene:: PDCD6IPP2 (Varview), LOC100289656 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: AA=0./0 (ALFA)
HGVS:: NC_000015.10:g.28788666dup, NC_000015.9:g.29033812dup, NW_011332701.1:g.950672dup, NT_187660.1:g.1064458dup, NR_036475.2:n.169dup

Select item 14876679656.

rs1487667965 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:28787965 (GRCh38)
15:29033111 (GRCh37)
Canonical SPDI:: NC_000015.10:28787964:A:G
Gene:: PDCD6IPP2 (Varview), LOC100289656 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000021/3 (GnomAD)
HGVS:: NC_000015.10:g.28787965A>G, NC_000015.9:g.29033111A>G, NW_011332701.1:g.949971A>G, NT_187660.1:g.1063757A>G

Select item 14875725487.

rs1487572548 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 15:28789327 (GRCh38)
15:29034473 (GRCh37)
Canonical SPDI:: NC_000015.10:28789326:C:G
Gene:: PDCD6IPP2 (Varview), LOC100289656 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000016/2 (GnomAD)
HGVS:: NC_000015.10:g.28789327C>G, NC_000015.9:g.29034473C>G, NW_011332701.1:g.951333C>G, NT_187660.1:g.1065119C>G, NR_036475.2:n.830C>G

Select item 14874455968.

rs1487445596 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:28788985 (GRCh38)
15:29034131 (GRCh37)
Canonical SPDI:: NC_000015.10:28788984:G:A
Gene:: PDCD6IPP2 (Varview), LOC100289656 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000015.10:g.28788985G>A, NC_000015.9:g.29034131G>A, NW_011332701.1:g.950991G>A, NT_187660.1:g.1064777G>A, NR_036475.2:n.488G>A

Select item 14873881079.

rs1487388107 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:28786727 (GRCh38)
15:29031873 (GRCh37)
Canonical SPDI:: NC_000015.10:28786726:A:G
Gene:: LOC100289656 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000015.10:g.28786727A>G, NC_000015.9:g.29031873A>G, NW_011332701.1:g.948733A>G, NT_187660.1:g.1062519A>G

Select item 148730471510.

rs1487304715 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 15:28789634 (GRCh38)
15:29034780 (GRCh37)
Canonical SPDI:: NC_000015.10:28789633:G:T
Gene:: PDCD6IPP2 (Varview), LOC100289656 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.28789634G>T, NC_000015.9:g.29034780G>T, NW_011332701.1:g.951640G>T, NT_187660.1:g.1065426G>T

Select item 148613204511.

rs1486132045 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 15:28788047 (GRCh38)
15:29033193 (GRCh37)
Canonical SPDI:: NC_000015.10:28788046:G:A,NC_000015.10:28788046:G:T
Gene:: PDCD6IPP2 (Varview), LOC100289656 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.28788047G>A, NC_000015.10:g.28788047G>T, NC_000015.9:g.29033193G>A, NC_000015.9:g.29033193G>T, NW_011332701.1:g.950053G>A, NW_011332701.1:g.950053G>T, NT_187660.1:g.1063839G>A, NT_187660.1:g.1063839G>T

Select item 148509671612.

rs1485096716 has merged into rs1204977580 [Homo sapiens]

Variant type:: DELINS
Alleles:: GGGCCCGCCACTTCAGGG>-,GGGCCCGCCACTTCAGGGGGGCCCGCCACTTCAGGG [Show Flanks]
Chromosome:: 15:28788956 (GRCh38)
15:29034102 (GRCh37)
Canonical SPDI:: NC_000015.10:28788943:GCCACTTCAGGGGGGCCCGCCACTTCAGGG:GCCACTTCAGGG,NC_000015.10:28788943:GCCACTTCAGGGGGGCCCGCCACTTCAGGG:GCCACTTCAGGGGGGCCCGCCACTTCAGGGGGGCCCGCCACTTCAGGG
Gene:: PDCD6IPP2 (Varview), LOC100289656 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GCCACTTCAGGGGGGCCCGCCACTTCAGGGGGGCCCGCCACTTCAGGG=0./0 (ALFA)
-=0.000022/3 (GnomAD)
HGVS:: NC_000015.10:g.28788956_28788973del, NC_000015.10:g.28788956_28788973dup, NC_000015.9:g.29034102_29034119del, NC_000015.9:g.29034102_29034119dup, NW_011332701.1:g.950962_950979del, NW_011332701.1:g.950962_950979dup, NT_187660.1:g.1064748_1064765del, NT_187660.1:g.1064748_1064765dup, NR_036475.2:n.459_476del, NR_036475.2:n.459_476dup

Select item 148447048213.

rs1484470482 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 15:28786424 (GRCh38)
15:29031570 (GRCh37)
Canonical SPDI:: NC_000015.10:28786423:T:C
Gene:: LOC100289656 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000029/4 (GnomAD)
C=0.00003/8 (TOPMED)
HGVS:: NC_000015.10:g.28786424T>C, NC_000015.9:g.29031570T>C, NW_011332701.1:g.948430T>C, NT_187660.1:g.1062216T>C

Select item 148443978914.

rs1484439789 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 15:28789445 (GRCh38)
15:29034591 (GRCh37)
Canonical SPDI:: NC_000015.10:28789444:G:A
Gene:: PDCD6IPP2 (Varview), LOC100289656 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.28789445G>A, NC_000015.9:g.29034591G>A, NW_011332701.1:g.951451G>A, NT_187660.1:g.1065237G>A

Select item 148441918915.

rs1484419189 [Homo sapiens]

Variant type:: INS
Alleles:: ->GATT [Show Flanks]
Chromosome:: 15:28788145 (GRCh38)
15:29033292 (GRCh37)
Canonical SPDI:: NC_000015.10:28788145::GATT
Gene:: PDCD6IPP2 (Varview), LOC100289656 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency
MAF:: GATT=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.28788145_28788146insGATT, NC_000015.9:g.29033291_29033292insGATT, NW_011332701.1:g.950151_950152insGATT, NT_187660.1:g.1063937_1063938insGATT

Select item 148393575316.

rs1483935753 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:28789648 (GRCh38)
15:29034794 (GRCh37)
Canonical SPDI:: NC_000015.10:28789647:C:T
Gene:: PDCD6IPP2 (Varview), LOC100289656 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.28789648C>T, NC_000015.9:g.29034794C>T, NW_011332701.1:g.951654C>T, NT_187660.1:g.1065440C>T

Select item 148374539817.

rs1483745398 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 15:28788824 (GRCh38)
15:29033970 (GRCh37)
Canonical SPDI:: NC_000015.10:28788823:G:A,NC_000015.10:28788823:G:C
Gene:: PDCD6IPP2 (Varview), LOC100289656 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000285/4 (ALFA)
C=0.000035/1 (TOMMO)
A=0.000121/32 (TOPMED)
A=0.000156/1 (1000Genomes)
A=0.000157/22 (GnomAD)
HGVS:: NC_000015.10:g.28788824G>A, NC_000015.10:g.28788824G>C, NC_000015.9:g.29033970G>A, NC_000015.9:g.29033970G>C, NW_011332701.1:g.950830G>A, NW_011332701.1:g.950830G>C, NT_187660.1:g.1064616G>A, NT_187660.1:g.1064616G>C, NR_036475.2:n.327G>A, NR_036475.2:n.327G>C

Select item 148361003618.

rs1483610036 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 15:28789396 (GRCh38)
15:29034542 (GRCh37)
Canonical SPDI:: NC_000015.10:28789395:G:C
Gene:: PDCD6IPP2 (Varview), LOC100289656 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000015.10:g.28789396G>C, NC_000015.9:g.29034542G>C, NW_011332701.1:g.951402G>C, NT_187660.1:g.1065188G>C

Select item 148158765319.

rs1481587653 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 15:28789086 (GRCh38)
15:29034232 (GRCh37)
Canonical SPDI:: NC_000015.10:28789085:G:C
Gene:: PDCD6IPP2 (Varview), LOC100289656 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.28789086G>C, NC_000015.9:g.29034232G>C, NW_011332701.1:g.951092G>C, NT_187660.1:g.1064878G>C, NR_036475.2:n.589G>C

Select item 148133417120.

rs1481334171 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 15:28788284 (GRCh38)
15:29033430 (GRCh37)
Canonical SPDI:: NC_000015.10:28788283:G:C
Gene:: PDCD6IPP2 (Varview), LOC100289656 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000142/2 (ALFA)
C=0.000019/5 (TOPMED)
C=0.000029/4 (GnomAD)
HGVS:: NC_000015.10:g.28788284G>C, NC_000015.9:g.29033430G>C, NW_011332701.1:g.950290G>C, NT_187660.1:g.1064076G>C, NR_036475.2:n.42G>C