SNP Links for Gene (Select 100302140) - SNP

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Links from Gene

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Select item 14893332881.

rs1489333288 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 7:18129228 (GRCh38)
7:18168851 (GRCh37)
Canonical SPDI:: NC_000007.14:18129227:C:A
Gene:: HDAC9 (Varview), MIR1302-6 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000142/2 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.18129228C>A, NC_000007.13:g.18168851C>A, NG_023250.3:g.47280C>A

Select item 14883552152.

rs1488355215 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:18128300 (GRCh38)
7:18167923 (GRCh37)
Canonical SPDI:: NC_000007.14:18128299:C:T
Gene:: HDAC9 (Varview), MIR1302-6 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000007.14:g.18128300C>T, NC_000007.13:g.18167923C>T, NG_023250.3:g.46352C>T

Select item 14881528573.

rs1488152857 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:18126978 (GRCh38)
7:18166601 (GRCh37)
Canonical SPDI:: NC_000007.14:18126977:A:G
Gene:: HDAC9 (Varview), MIR1302-6 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.18126978A>G, NC_000007.13:g.18166601A>G, NG_023250.3:g.45030A>G

Select item 14863001974.

rs1486300197 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 7:18129167 (GRCh38)
7:18168790 (GRCh37)
Canonical SPDI:: NC_000007.14:18129166:G:C,NC_000007.14:18129166:G:T
Gene:: HDAC9 (Varview), MIR1302-6 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000007.14:g.18129167G>C, NC_000007.14:g.18129167G>T, NC_000007.13:g.18168790G>C, NC_000007.13:g.18168790G>T, NG_023250.3:g.47219G>C, NG_023250.3:g.47219G>T

Select item 14840902745.

rs1484090274 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:18128319 (GRCh38)
7:18167942 (GRCh37)
Canonical SPDI:: NC_000007.14:18128318:G:A
Gene:: HDAC9 (Varview), MIR1302-6 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.18128319G>A, NC_000007.13:g.18167942G>A, NG_023250.3:g.46371G>A

Select item 14823885596.

rs1482388559 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 7:18127305 (GRCh38)
7:18166928 (GRCh37)
Canonical SPDI:: NC_000007.14:18127304:T:A
Gene:: HDAC9 (Varview), MIR1302-6 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.18127305T>A, NC_000007.13:g.18166928T>A, NG_023250.3:g.45357T>A, NR_031635.1:n.5A>T

Select item 14796529607.

rs1479652960 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 7:18127979 (GRCh38)
7:18167602 (GRCh37)
Canonical SPDI:: NC_000007.14:18127978:A:G,NC_000007.14:18127978:A:T
Gene:: HDAC9 (Varview), MIR1302-6 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
T=0.000342/1 (KOREAN)
HGVS:: NC_000007.14:g.18127979A>G, NC_000007.14:g.18127979A>T, NC_000007.13:g.18167602A>G, NC_000007.13:g.18167602A>T, NG_023250.3:g.46031A>G, NG_023250.3:g.46031A>T

Select item 14785637078.

rs1478563707 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 7:18127637 (GRCh38)
7:18167260 (GRCh37)
Canonical SPDI:: NC_000007.14:18127636:T:G
Gene:: HDAC9 (Varview), MIR1302-6 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.18127637T>G, NC_000007.13:g.18167260T>G, NG_023250.3:g.45689T>G

Select item 14784277939.

rs1478427793 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->G [Show Flanks]
Chromosome:: 7:18128824 (GRCh38)
7:18168448 (GRCh37)
Canonical SPDI:: NC_000007.14:18128824:G:GG
Gene:: HDAC9 (Varview), MIR1302-6 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency
MAF:: G=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.18128825dup, NC_000007.13:g.18168448dup, NG_023250.3:g.46877dup

Select item 147531867610.

rs1475318676 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:18128913 (GRCh38)
7:18168536 (GRCh37)
Canonical SPDI:: NC_000007.14:18128912:C:T
Gene:: HDAC9 (Varview), MIR1302-6 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.18128913C>T, NC_000007.13:g.18168536C>T, NG_023250.3:g.46965C>T

Select item 147479637011.

rs1474796370 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:18127791 (GRCh38)
7:18167414 (GRCh37)
Canonical SPDI:: NC_000007.14:18127790:G:A
Gene:: HDAC9 (Varview), MIR1302-6 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.18127791G>A, NC_000007.13:g.18167414G>A, NG_023250.3:g.45843G>A

Select item 147451810212.

rs1474518102 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:18126975 (GRCh38)
7:18166598 (GRCh37)
Canonical SPDI:: NC_000007.14:18126974:G:A
Gene:: HDAC9 (Varview), MIR1302-6 (Varview)
Functional Consequence:: 500B_downstream_variant,intron_variant,downstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.18126975G>A, NC_000007.13:g.18166598G>A, NG_023250.3:g.45027G>A

Select item 147438602513.

rs1474386025 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 7:18127399 (GRCh38)
7:18167022 (GRCh37)
Canonical SPDI:: NC_000007.14:18127398:T:G
Gene:: HDAC9 (Varview), MIR1302-6 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.18127399T>G, NC_000007.13:g.18167022T>G, NG_023250.3:g.45451T>G

Select item 147340740614.

rs1473407406 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:18126846 (GRCh38)
7:18166469 (GRCh37)
Canonical SPDI:: NC_000007.14:18126845:A:G
Gene:: HDAC9 (Varview), MIR1302-6 (Varview)
Functional Consequence:: 500B_downstream_variant,intron_variant,downstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
HGVS:: NC_000007.14:g.18126846A>G, NC_000007.13:g.18166469A>G, NG_023250.3:g.44898A>G

Select item 147335674915.

rs1473356749 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 7:18127975 (GRCh38)
7:18167598 (GRCh37)
Canonical SPDI:: NC_000007.14:18127974:C:G
Gene:: HDAC9 (Varview), MIR1302-6 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000023/6 (TOPMED)
HGVS:: NC_000007.14:g.18127975C>G, NC_000007.13:g.18167598C>G, NG_023250.3:g.46027C>G

Select item 147284766116.

rs1472847661 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 7:18126754 (GRCh38)
7:18166377 (GRCh37)
Canonical SPDI:: NC_000007.14:18126753:T:C
Gene:: HDAC9 (Varview), MIR1302-6 (Varview)
Functional Consequence:: 500B_downstream_variant,intron_variant,downstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.18126754T>C, NC_000007.13:g.18166377T>C, NG_023250.3:g.44806T>C

Select item 147204263217.

rs1472042632 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:18129058 (GRCh38)
7:18168681 (GRCh37)
Canonical SPDI:: NC_000007.14:18129057:A:G
Gene:: HDAC9 (Varview), MIR1302-6 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000029/4 (GnomAD)
HGVS:: NC_000007.14:g.18129058A>G, NC_000007.13:g.18168681A>G, NG_023250.3:g.47110A>G

Select item 146999424818.

rs1469994248 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 7:18127053 (GRCh38)
7:18166676 (GRCh37)
Canonical SPDI:: NC_000007.14:18127052:G:T
Gene:: HDAC9 (Varview), MIR1302-6 (Varview)
Functional Consequence:: 500B_downstream_variant,intron_variant,downstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.18127053G>T, NC_000007.13:g.18166676G>T, NG_023250.3:g.45105G>T

Select item 146995094819.

rs1469950948 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 7:18128550 (GRCh38)
7:18168173 (GRCh37)
Canonical SPDI:: NC_000007.14:18128549:G:C
Gene:: HDAC9 (Varview), MIR1302-6 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.18128550G>C, NC_000007.13:g.18168173G>C, NG_023250.3:g.46602G>C

Select item 146944304620.

rs1469443046 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 7:18128501 (GRCh38)
7:18168124 (GRCh37)
Canonical SPDI:: NC_000007.14:18128500:G:C
Gene:: HDAC9 (Varview), MIR1302-6 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.18128501G>C, NC_000007.13:g.18168124G>C, NG_023250.3:g.46553G>C