SNP Links for Gene (Select 100302153) - SNP

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Links from Gene

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Select item 14904024191.

rs1490402419 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:114714143 (GRCh38)
X:113948560 (GRCh37)
Canonical SPDI:: NC_000023.11:114714142:G:A
Gene:: HTR2C (Varview), MIR1298 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000023.11:g.114714143G>A, NW_004070891.1:g.382945G>A, NG_012082.3:g.135059G>A, NC_000023.10:g.113948560G>A

Select item 14821860222.

rs1482186022 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:114715018 (GRCh38)
X:113949435 (GRCh37)
Canonical SPDI:: NC_000023.11:114715017:A:G
Gene:: HTR2C (Varview), MIR1298 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000015/4 (TOPMED)
HGVS:: NC_000023.11:g.114715018A>G, NW_004070891.1:g.383820A>G, NG_012082.3:g.135934A>G, NC_000023.10:g.113949435A>G

Select item 14817447883.

rs1481744788 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: X:114714799 (GRCh38)
X:113949216 (GRCh37)
Canonical SPDI:: NC_000023.11:114714798:G:C,NC_000023.11:114714798:G:T
Gene:: HTR2C (Varview), MIR1298 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000072/19 (TOPMED)
HGVS:: NC_000023.11:g.114714799G>C, NC_000023.11:g.114714799G>T, NW_004070891.1:g.383601G>C, NW_004070891.1:g.383601G>T, NG_012082.3:g.135715G>C, NG_012082.3:g.135715G>T, NC_000023.10:g.113949216G>C, NC_000023.10:g.113949216G>T

Select item 14812640124.

rs1481264012 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: X:114713253 (GRCh38)
X:113947670 (GRCh37)
Canonical SPDI:: NC_000023.11:114713252:G:T
Gene:: HTR2C (Varview), MIR1298 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000029/3 (GnomAD)
HGVS:: NC_000023.11:g.114713253G>T, NW_004070891.1:g.382055G>T, NG_012082.3:g.134169G>T, NC_000023.10:g.113947670G>T

Select item 14805979255.

rs1480597925 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: X:114714330 (GRCh38)
X:113948747 (GRCh37)
Canonical SPDI:: NC_000023.11:114714329:T:G
Gene:: HTR2C (Varview), MIR1298 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000023.11:g.114714330T>G, NW_004070891.1:g.383132T>G, NG_012082.3:g.135246T>G, NC_000023.10:g.113948747T>G

Select item 14758472396.

rs1475847239 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:114713679 (GRCh38)
X:113948096 (GRCh37)
Canonical SPDI:: NC_000023.11:114713678:T:C
Gene:: HTR2C (Varview), MIR1298 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000023.11:g.114713679T>C, NW_004070891.1:g.382481T>C, NG_012082.3:g.134595T>C, NC_000023.10:g.113948096T>C

Select item 14719838687.

rs1471983868 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:114715656 (GRCh38)
X:113950069 (GRCh37)
Canonical SPDI:: NC_000023.11:114715655:A:G
Gene:: HTR2C (Varview), MIR1298 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000029/3 (GnomAD)
G=0.000053/14 (TOPMED)
HGVS:: NC_000023.11:g.114715656A>G, NW_004070891.1:g.384458A>G, NG_012082.3:g.136572A>G, NC_000023.10:g.113950069A>G

Select item 14717740028.

rs1471774002 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: X:114715107 (GRCh38)
X:113949524 (GRCh37)
Canonical SPDI:: NC_000023.11:114715106:C:G,NC_000023.11:114715106:C:T
Gene:: HTR2C (Varview), MIR1298 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000023.11:g.114715107C>G, NC_000023.11:g.114715107C>T, NW_004070891.1:g.383909C>G, NW_004070891.1:g.383909C>T, NG_012082.3:g.136023C>G, NG_012082.3:g.136023C>T, NC_000023.10:g.113949524C>G, NC_000023.10:g.113949524C>T

Select item 14708496999.

rs1470849699 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:114713456 (GRCh38)
X:113947873 (GRCh37)
Canonical SPDI:: NC_000023.11:114713455:A:G
Gene:: HTR2C (Varview), MIR1298 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000008/2 (TOPMED)
G=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.114713456A>G, NW_004070891.1:g.382258A>G, NG_012082.3:g.134372A>G, NC_000023.10:g.113947873A>G

Select item 147047595010.

rs1470475950 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: X:114714513 (GRCh38)
X:113948930 (GRCh37)
Canonical SPDI:: NC_000023.11:114714512:G:T
Gene:: HTR2C (Varview), MIR1298 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000023.11:g.114714513G>T, NW_004070891.1:g.383315G>T, NG_012082.3:g.135429G>T, NC_000023.10:g.113948930G>T

Select item 146989385411.

rs1469893854 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:114714114 (GRCh38)
X:113948531 (GRCh37)
Canonical SPDI:: NC_000023.11:114714113:C:T
Gene:: HTR2C (Varview), MIR1298 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000015/4 (TOPMED)
T=0.000029/3 (GnomAD)
HGVS:: NC_000023.11:g.114714114C>T, NW_004070891.1:g.382916C>T, NG_012082.3:g.135030C>T, NC_000023.10:g.113948531C>T

Select item 146579861612.

rs1465798616 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: X:114715295 (GRCh38)
X:113949712 (GRCh37)
Canonical SPDI:: NC_000023.11:114715294:C:G,NC_000023.11:114715294:C:T
Gene:: HTR2C (Varview), MIR1298 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.00001/1 (GnomAD)
T=0.000011/2 (GnomAD_exomes)
HGVS:: NC_000023.11:g.114715295C>G, NC_000023.11:g.114715295C>T, NW_004070891.1:g.384097C>G, NW_004070891.1:g.384097C>T, NG_012082.3:g.136211C>G, NG_012082.3:g.136211C>T, NC_000023.10:g.113949712C>G, NC_000023.10:g.113949712C>T, NR_031578.1:n.63C>G, NR_031578.1:n.63C>T

Select item 146572493813.

rs1465724938 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:114715136 (GRCh38)
X:113949553 (GRCh37)
Canonical SPDI:: NC_000023.11:114715135:A:G
Gene:: HTR2C (Varview), MIR1298 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
HGVS:: NC_000023.11:g.114715136A>G, NW_004070891.1:g.383938A>G, NG_012082.3:g.136052A>G, NC_000023.10:g.113949553A>G

Select item 146310326814.

rs1463103268 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:114713729 (GRCh38)
X:113948146 (GRCh37)
Canonical SPDI:: NC_000023.11:114713728:A:G
Gene:: HTR2C (Varview), MIR1298 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.00001/1 (GnomAD)
G=0.000045/1 (TOMMO)
HGVS:: NC_000023.11:g.114713729A>G, NW_004070891.1:g.382531A>G, NG_012082.3:g.134645A>G, NC_000023.10:g.113948146A>G

Select item 146290458215.

rs1462904582 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:114715339 (GRCh38)
X:113949756 (GRCh37)
Canonical SPDI:: NC_000023.11:114715338:G:A
Gene:: HTR2C (Varview), MIR1298 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000023/4 (GnomAD_exomes)
A=0.000106/11 (GnomAD)
HGVS:: NC_000023.11:g.114715339G>A, NW_004070891.1:g.384141G>A, NG_012082.3:g.136255G>A, NC_000023.10:g.113949756G>A, NR_031578.1:n.107G>A

Select item 146066645116.

rs1460666451 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: X:114714648 (GRCh38)
X:113949065 (GRCh37)
Canonical SPDI:: NC_000023.11:114714647:C:G
Gene:: HTR2C (Varview), MIR1298 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.114714648C>G, NW_004070891.1:g.383450C>G, NG_012082.3:g.135564C>G, NC_000023.10:g.113949065C>G

Select item 145739797917.

rs1457397979 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: X:114714973 (GRCh38)
X:113949390 (GRCh37)
Canonical SPDI:: NC_000023.11:114714972:T:G
Gene:: HTR2C (Varview), MIR1298 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.114714973T>G, NW_004070891.1:g.383775T>G, NG_012082.3:g.135889T>G, NC_000023.10:g.113949390T>G

Select item 145707312218.

rs1457073122 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: X:114714292 (GRCh38)
X:113948709 (GRCh37)
Canonical SPDI:: NC_000023.11:114714291:T:A
Gene:: HTR2C (Varview), MIR1298 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000019/5 (TOPMED)
HGVS:: NC_000023.11:g.114714292T>A, NW_004070891.1:g.383094T>A, NG_012082.3:g.135208T>A, NC_000023.10:g.113948709T>A

Select item 145422263119.

rs1454222631 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:114715092 (GRCh38)
X:113949509 (GRCh37)
Canonical SPDI:: NC_000023.11:114715091:A:G
Gene:: HTR2C (Varview), MIR1298 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.114715092A>G, NW_004070891.1:g.383894A>G, NG_012082.3:g.136008A>G, NC_000023.10:g.113949509A>G

Select item 145105661220.

rs1451056612 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:114715109 (GRCh38)
X:113949526 (GRCh37)
Canonical SPDI:: NC_000023.11:114715108:C:T
Gene:: HTR2C (Varview), MIR1298 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000015/4 (TOPMED)
T=0.000029/3 (GnomAD)
HGVS:: NC_000023.11:g.114715109C>T, NW_004070891.1:g.383911C>T, NG_012082.3:g.136025C>T, NC_000023.10:g.113949526C>T