SNP Links for Gene (Select 100302223) - SNP

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Links from Gene

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Select item 14878441301.

rs1487844130 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:97364063 (GRCh38)
9:100126345 (GRCh37)
Canonical SPDI:: NC_000009.12:97364062:C:T
Gene:: SUGT1P4-STRA6LP-CCDC180 (Varview), MIR1302-8 (Varview), CCDC180 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,upstream_transcript_variant,coding_sequence_variant,synonymous_variant,genic_downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency
MAF:: T=0.000008/2 (GnomAD_exomes)
HGVS:: NC_000009.12:g.97364063C>T, NC_000009.11:g.100126345C>T, NG_052792.1:g.61760C>T, NM_020893.6:c.3915C>T, NM_020893.5:c.4047C>T, NM_020893.4:c.4047C>T, NM_020893.3:c.4047C>T, NM_020893.2:c.4047C>T, NR_036528.1:n.5470C>T, NR_036527.1:n.4888C>T

Select item 14861236782.

rs1486123678 [Homo sapiens]

Variant type:: DEL
Alleles:: G>- [Show Flanks]
Chromosome:: 9:97363177 (GRCh38)
9:100125459 (GRCh37)
Canonical SPDI:: NC_000009.12:97363176:G:
Gene:: SUGT1P4-STRA6LP-CCDC180 (Varview), MIR1302-8 (Varview), CCDC180 (Varview)
Functional Consequence:: 500B_downstream_variant,genic_downstream_transcript_variant,downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000021/3 (GnomAD)
-=0.000026/7 (TOPMED)
HGVS:: NC_000009.12:g.97363177del, NC_000009.11:g.100125459del, NG_052792.1:g.60874del

Select item 14857496083.

rs1485749608 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:97363594 (GRCh38)
9:100125876 (GRCh37)
Canonical SPDI:: NC_000009.12:97363593:T:C
Gene:: SUGT1P4-STRA6LP-CCDC180 (Varview), MIR1302-8 (Varview), CCDC180 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.97363594T>C, NC_000009.11:g.100125876T>C, NG_052792.1:g.61291T>C, NR_031637.1:n.88A>G

Select item 14822178734.

rs1482217873 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:97365197 (GRCh38)
9:100127479 (GRCh37)
Canonical SPDI:: NC_000009.12:97365196:C:T
Gene:: SUGT1P4-STRA6LP-CCDC180 (Varview), MIR1302-8 (Varview), CCDC180 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_downstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.97365197C>T, NC_000009.11:g.100127479C>T, NG_052792.1:g.62894C>T

Select item 14817528865.

rs1481752886 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:97365578 (GRCh38)
9:100127860 (GRCh37)
Canonical SPDI:: NC_000009.12:97365577:A:G
Gene:: SUGT1P4-STRA6LP-CCDC180 (Varview), MIR1302-8 (Varview), CCDC180 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_downstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.97365578A>G, NC_000009.11:g.100127860A>G, NG_052792.1:g.63275A>G

Select item 14814618656.

rs1481461865 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:97364701 (GRCh38)
9:100126983 (GRCh37)
Canonical SPDI:: NC_000009.12:97364700:C:T
Gene:: SUGT1P4-STRA6LP-CCDC180 (Varview), MIR1302-8 (Varview), CCDC180 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_downstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000084/1 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000029/4 (GnomAD)
HGVS:: NC_000009.12:g.97364701C>T, NC_000009.11:g.100126983C>T, NG_052792.1:g.62398C>T

Select item 14797987957.

rs1479798795 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 9:97363353 (GRCh38)
9:100125635 (GRCh37)
Canonical SPDI:: NC_000009.12:97363352:C:A
Gene:: SUGT1P4-STRA6LP-CCDC180 (Varview), MIR1302-8 (Varview), CCDC180 (Varview)
Functional Consequence:: 500B_downstream_variant,genic_downstream_transcript_variant,downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.97363353C>A, NC_000009.11:g.100125635C>A, NG_052792.1:g.61050C>A

Select item 14797076788.

rs1479707678 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 9:97365203 (GRCh38)
9:100127485 (GRCh37)
Canonical SPDI:: NC_000009.12:97365202:C:A
Gene:: SUGT1P4-STRA6LP-CCDC180 (Varview), MIR1302-8 (Varview), CCDC180 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_downstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.97365203C>A, NC_000009.11:g.100127485C>A, NG_052792.1:g.62900C>A

Select item 14781623519.

rs1478162351 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 9:97364407 (GRCh38)
9:100126689 (GRCh37)
Canonical SPDI:: NC_000009.12:97364406:G:A,NC_000009.12:97364406:G:T
Gene:: SUGT1P4-STRA6LP-CCDC180 (Varview), MIR1302-8 (Varview), CCDC180 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_downstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0.0002/3 (ALFA)
T=0.00067/3 (Estonian)
HGVS:: NC_000009.12:g.97364407G>A, NC_000009.12:g.97364407G>T, NC_000009.11:g.100126689G>A, NC_000009.11:g.100126689G>T, NG_052792.1:g.62104G>A, NG_052792.1:g.62104G>T

Select item 147734634610.

rs1477346346 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 9:97363996 (GRCh38)
9:100126278 (GRCh37)
Canonical SPDI:: NC_000009.12:97363995:C:A
Gene:: SUGT1P4-STRA6LP-CCDC180 (Varview), MIR1302-8 (Varview), CCDC180 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,genic_downstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency
MAF:: A=0.000012/3 (GnomAD_exomes)
HGVS:: NC_000009.12:g.97363996C>A, NC_000009.11:g.100126278C>A, NG_052792.1:g.61693C>A

Select item 147483399111.

rs1474833991 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:97363772 (GRCh38)
9:100126054 (GRCh37)
Canonical SPDI:: NC_000009.12:97363771:G:A
Gene:: SUGT1P4-STRA6LP-CCDC180 (Varview), MIR1302-8 (Varview), CCDC180 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,genic_downstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000009.12:g.97363772G>A, NC_000009.11:g.100126054G>A, NG_052792.1:g.61469G>A

Select item 147336889912.

rs1473368899 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:97364697 (GRCh38)
9:100126979 (GRCh37)
Canonical SPDI:: NC_000009.12:97364696:C:T
Gene:: SUGT1P4-STRA6LP-CCDC180 (Varview), MIR1302-8 (Varview), CCDC180 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,genic_downstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000029/4 (GnomAD)
HGVS:: NC_000009.12:g.97364697C>T, NC_000009.11:g.100126979C>T, NG_052792.1:g.62394C>T

Select item 147239051213.

rs1472390512 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:97365186 (GRCh38)
9:100127468 (GRCh37)
Canonical SPDI:: NC_000009.12:97365185:A:G
Gene:: SUGT1P4-STRA6LP-CCDC180 (Varview), MIR1302-8 (Varview), CCDC180 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,genic_downstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.97365186A>G, NC_000009.11:g.100127468A>G, NG_052792.1:g.62883A>G

Select item 147106991014.

rs1471069910 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>- [Show Flanks]
Chromosome:: 9:97364471 (GRCh38)
9:100126753 (GRCh37)
Canonical SPDI:: NC_000009.12:97364470:AAAA:AAA
Gene:: SUGT1P4-STRA6LP-CCDC180 (Varview), MIR1302-8 (Varview), CCDC180 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,genic_downstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAA=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000015/4 (TOPMED)
HGVS:: NC_000009.12:g.97364474del, NC_000009.11:g.100126756del, NG_052792.1:g.62171del

Select item 146994542415.

rs1469945424 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 9:97364019 (GRCh38)
9:100126301 (GRCh37)
Canonical SPDI:: NC_000009.12:97364018:C:G
Gene:: SUGT1P4-STRA6LP-CCDC180 (Varview), MIR1302-8 (Varview), CCDC180 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000031/1 (ALFA)
G=0.000014/2 (GnomAD)
HGVS:: NC_000009.12:g.97364019C>G, NC_000009.11:g.100126301C>G, NG_052792.1:g.61716C>G, NR_036527.1:n.4844C>G

Select item 146984706716.

rs1469847067 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 9:97363661 (GRCh38)
9:100125943 (GRCh37)
Canonical SPDI:: NC_000009.12:97363660:T:A,NC_000009.12:97363660:T:C
Gene:: SUGT1P4-STRA6LP-CCDC180 (Varview), MIR1302-8 (Varview), CCDC180 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.00005/1 (ALFA)
HGVS:: NC_000009.12:g.97363661T>A, NC_000009.12:g.97363661T>C, NC_000009.11:g.100125943T>A, NC_000009.11:g.100125943T>C, NG_052792.1:g.61358T>A, NG_052792.1:g.61358T>C, NR_031637.1:n.21A>T, NR_031637.1:n.21A>G

Select item 146855165017.

rs1468551650 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 9:97363530 (GRCh38)
9:100125812 (GRCh37)
Canonical SPDI:: NC_000009.12:97363529:A:G
Gene:: SUGT1P4-STRA6LP-CCDC180 (Varview), MIR1302-8 (Varview), CCDC180 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.97363530A>G, NC_000009.11:g.100125812A>G, NG_052792.1:g.61227A>G

Select item 146548887418.

rs1465488874 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 9:97364532 (GRCh38)
9:100126814 (GRCh37)
Canonical SPDI:: NC_000009.12:97364531:A:C
Gene:: SUGT1P4-STRA6LP-CCDC180 (Varview), MIR1302-8 (Varview), CCDC180 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,genic_downstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.97364532A>C, NC_000009.11:g.100126814A>C, NG_052792.1:g.62229A>C

Select item 146529273919.

rs1465292739 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:97364271 (GRCh38)
9:100126553 (GRCh37)
Canonical SPDI:: NC_000009.12:97364270:C:T
Gene:: SUGT1P4-STRA6LP-CCDC180 (Varview), MIR1302-8 (Varview), CCDC180 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,genic_downstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.97364271C>T, NC_000009.11:g.100126553C>T, NG_052792.1:g.61968C>T

Select item 146480938020.

rs1464809380 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:97365643 (GRCh38)
9:100127925 (GRCh37)
Canonical SPDI:: NC_000009.12:97365642:C:T
Gene:: SUGT1P4-STRA6LP-CCDC180 (Varview), MIR1302-8 (Varview), CCDC180 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,genic_downstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency
MAF:: T=0.000004/1 (GnomAD_exomes)
HGVS:: NC_000009.12:g.97365643C>T, NC_000009.11:g.100127925C>T, NG_052792.1:g.63340C>T