SNP Links for Gene (Select 100313838) - SNP

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Select item 14903746471.

rs1490374647 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:114639903 (GRCh38)
X:113874386 (GRCh37)
Canonical SPDI:: NC_000023.11:114639902:C:T
Gene:: HTR2C (Varview), MIR764 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000023.11:g.114639903C>T, NW_004070891.1:g.308705C>T, NG_012082.3:g.60819C>T, NC_000023.10:g.113874386C>T

Select item 14902117742.

rs1490211774 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: X:114639190 (GRCh38)
X:113873673 (GRCh37)
Canonical SPDI:: NC_000023.11:114639189:C:A
Gene:: HTR2C (Varview), MIR764 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000015/4 (TOPMED)
A=0.000019/2 (GnomAD)
HGVS:: NC_000023.11:g.114639190C>A, NW_004070891.1:g.307992C>A, NG_012082.3:g.60106C>A, NC_000023.10:g.113873673C>A

Select item 14902069013.

rs1490206901 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:114638196 (GRCh38)
X:113872667 (GRCh37)
Canonical SPDI:: NC_000023.11:114638195:C:T
Gene:: HTR2C (Varview), MIR764 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000019/2 (GnomAD)
T=0.000113/30 (TOPMED)
HGVS:: NC_000023.11:g.114638196C>T, NW_004070891.1:g.306998C>T, NG_012082.3:g.59112C>T, NC_000023.10:g.113872667C>T

Select item 14889921924.

rs1488992192 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:114638726 (GRCh38)
X:113873209 (GRCh37)
Canonical SPDI:: NC_000023.11:114638725:C:T
Gene:: HTR2C (Varview), MIR764 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000023.11:g.114638726C>T, NW_004070891.1:g.307528C>T, NG_012082.3:g.59642C>T, NC_000023.10:g.113873209C>T

Select item 14889813055.

rs1488981305 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:114637581 (GRCh38)
X:113872052 (GRCh37)
Canonical SPDI:: NC_000023.11:114637580:C:T
Gene:: HTR2C (Varview), MIR764 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000015/4 (TOPMED)
HGVS:: NC_000023.11:g.114637581C>T, NW_004070891.1:g.306383C>T, NG_012082.3:g.58497C>T, NC_000023.10:g.113872052C>T

Select item 14886722856.

rs1488672285 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:114638293 (GRCh38)
X:113872764 (GRCh37)
Canonical SPDI:: NC_000023.11:114638292:T:C
Gene:: HTR2C (Varview), MIR764 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000023.11:g.114638293T>C, NW_004070891.1:g.307095T>C, NG_012082.3:g.59209T>C, NC_000023.10:g.113872764T>C

Select item 14886307947.

rs1488630794 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: X:114637451 (GRCh38)
X:113871922 (GRCh37)
Canonical SPDI:: NC_000023.11:114637450:C:G
Gene:: HTR2C (Varview), MIR764 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000087/9 (GnomAD)
G=0.00011/29 (TOPMED)
HGVS:: NC_000023.11:g.114637451C>G, NW_004070891.1:g.306253C>G, NG_012082.3:g.58367C>G, NC_000023.10:g.113871922C>G

Select item 14885194088.

rs1488519408 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CTAGCAT [Show Flanks]
Chromosome:: X:114638633 (GRCh38)
X:113873117 (GRCh37)
Canonical SPDI:: NC_000023.11:114638633:CATCTAGCAT:CATCTAGCATCTAGCAT
Gene:: HTR2C (Varview), MIR764 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CATCTAGCATCTAGCAT=0./0 (ALFA)
CATCTAG=0.000015/4 (TOPMED)
CATCTAG=0.000021/2 (GnomAD)
HGVS:: NC_000023.11:g.114638637_114638643dup, NW_004070891.1:g.307439_307445dup, NG_012082.3:g.59553_59559dup, NC_000023.10:g.113873120_113873126dup

Select item 14865027879.

rs1486502787 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: X:114639364 (GRCh38)
X:113873848 (GRCh37)
Canonical SPDI:: NC_000023.11:114639364:TTTTT:TTTTTT
Gene:: HTR2C (Varview), MIR764 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTT=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000019/2 (GnomAD)
HGVS:: NC_000023.11:g.114639369dup, NW_004070891.1:g.308171dup, NG_012082.3:g.60285dup, NC_000023.10:g.113873852dup

Select item 148015005010.

rs1480150050 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:114639350 (GRCh38)
X:113873833 (GRCh37)
Canonical SPDI:: NC_000023.11:114639349:A:G
Gene:: HTR2C (Varview), MIR764 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000023.11:g.114639350A>G, NW_004070891.1:g.308152A>G, NG_012082.3:g.60266A>G, NC_000023.10:g.113873833A>G

Select item 148013177911.

rs1480131779 [Homo sapiens]

Variant type:: DELINS
Alleles:: TAT>- [Show Flanks]
Chromosome:: X:114638540 (GRCh38)
X:113873023 (GRCh37)
Canonical SPDI:: NC_000023.11:114638532:TTATTATTAT:TTATTAT
Gene:: HTR2C (Varview), MIR764 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTATTAT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.114638534TAT[2], NW_004070891.1:g.307336TAT[2], NG_012082.3:g.59450TAT[2], NC_000023.10:g.113873017TAT[2]

Select item 148001994812.

rs1480019948 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:114639766 (GRCh38)
X:113874249 (GRCh37)
Canonical SPDI:: NC_000023.11:114639765:G:A
Gene:: HTR2C (Varview), MIR764 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000023.11:g.114639766G>A, NW_004070891.1:g.308568G>A, NG_012082.3:g.60682G>A, NC_000023.10:g.113874249G>A

Select item 147889764113.

rs1478897641 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: X:114638172 (GRCh38)
X:113872643 (GRCh37)
Canonical SPDI:: NC_000023.11:114638171:C:A,NC_000023.11:114638171:C:T
Gene:: HTR2C (Varview), MIR764 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000214/3 (ALFA)
A=0.000023/6 (TOPMED)
A=0.000029/3 (GnomAD)
T=0.000208/1 (1000Genomes)
HGVS:: NC_000023.11:g.114638172C>A, NC_000023.11:g.114638172C>T, NW_004070891.1:g.306974C>A, NW_004070891.1:g.306974C>T, NG_012082.3:g.59088C>A, NG_012082.3:g.59088C>T, NC_000023.10:g.113872643C>A, NC_000023.10:g.113872643C>T

Select item 147862549314.

rs1478625493 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: X:114637765 (GRCh38)
X:113872236 (GRCh37)
Canonical SPDI:: NC_000023.11:114637764:C:G,NC_000023.11:114637764:C:T
Gene:: HTR2C (Varview), MIR764 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
G=0.000019/2 (GnomAD)
HGVS:: NC_000023.11:g.114637765C>G, NC_000023.11:g.114637765C>T, NW_004070891.1:g.306567C>G, NW_004070891.1:g.306567C>T, NG_012082.3:g.58681C>G, NG_012082.3:g.58681C>T, NC_000023.10:g.113872236C>G, NC_000023.10:g.113872236C>T

Select item 147851247315.

rs1478512473 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:114638789 (GRCh38)
X:113873272 (GRCh37)
Canonical SPDI:: NC_000023.11:114638788:T:C
Gene:: HTR2C (Varview), MIR764 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.114638789T>C, NW_004070891.1:g.307591T>C, NG_012082.3:g.59705T>C, NC_000023.10:g.113873272T>C

Select item 147815092216.

rs1478150922 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:114638459 (GRCh38)
X:113872930 (GRCh37)
Canonical SPDI:: NC_000023.11:114638458:A:G
Gene:: HTR2C (Varview), MIR764 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.114638459A>G, NW_004070891.1:g.307261A>G, NG_012082.3:g.59375A>G, NC_000023.10:g.113872930A>G

Select item 147415581417.

rs1474155814 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: X:114638860 (GRCh38)
X:113873343 (GRCh37)
Canonical SPDI:: NC_000023.11:114638859:A:C
Gene:: HTR2C (Varview), MIR764 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.114638860A>C, NW_004070891.1:g.307662A>C, NG_012082.3:g.59776A>C, NC_000023.10:g.113873343A>C

Select item 147410452118.

rs1474104521 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:114637861 (GRCh38)
X:113872332 (GRCh37)
Canonical SPDI:: NC_000023.11:114637860:C:T
Gene:: HTR2C (Varview), MIR764 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000195/20 (GnomAD)
T=0.00023/61 (TOPMED)
T=0.000342/1 (KOREAN)
HGVS:: NC_000023.11:g.114637861C>T, NW_004070891.1:g.306663C>T, NG_012082.3:g.58777C>T, NC_000023.10:g.113872332C>T

Select item 147219724619.

rs1472197246 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:114638003 (GRCh38)
X:113872474 (GRCh37)
Canonical SPDI:: NC_000023.11:114638002:A:G
Gene:: HTR2C (Varview), MIR764 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000034/9 (TOPMED)
G=0.000048/5 (GnomAD)
HGVS:: NC_000023.11:g.114638003A>G, NW_004070891.1:g.306805A>G, NG_012082.3:g.58919A>G, NC_000023.10:g.113872474A>G

Select item 146953072520.

rs1469530725 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: X:114639492 (GRCh38)
X:113873975 (GRCh37)
Canonical SPDI:: NC_000023.11:114639491:G:T
Gene:: HTR2C (Varview), MIR764 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.114639492G>T, NW_004070891.1:g.308294G>T, NG_012082.3:g.60408G>T, NC_000023.10:g.113873975G>T, NR_031581.1:n.58G>T

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