SNP Links for Gene (Select 100379224) - SNP

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Items: 1 to 20 of 2473

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Select item 14909378891.

rs1490937889 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:44113100 (GRCh38)
19:44617253 (GRCh37)
Canonical SPDI:: NC_000019.10:44113099:C:T
Gene:: ZNF225 (Varview), ZNF225-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000019.10:g.44113100C>T, NC_000019.9:g.44617253C>T, NR_033341.1:n.84G>A

Select item 14908114582.

rs1490811458 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:44105495 (GRCh38)
19:44609648 (GRCh37)
Canonical SPDI:: NC_000019.10:44105494:G:A
Gene:: ZNF224 (Varview), ZNF225-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000019/5 (TOPMED)
A=0.000022/3 (GnomAD)
HGVS:: NC_000019.10:g.44105495G>A, NC_000019.9:g.44609648G>A, NG_051221.1:g.16167G>A, NR_033341.1:n.3205C>T, NM_005774.1:c.-922G>A

Select item 14904466583.

rs1490446658 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 19:44112534 (GRCh38)
19:44616687 (GRCh37)
Canonical SPDI:: NC_000019.10:44112533:A:C
Gene:: ZNF225 (Varview), ZNF225-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000021/3 (GnomAD)
C=0.000023/6 (TOPMED)
HGVS:: NC_000019.10:g.44112534A>C, NC_000019.9:g.44616687A>C

Select item 14896876274.

rs1489687627 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:44111982 (GRCh38)
19:44616135 (GRCh37)
Canonical SPDI:: NC_000019.10:44111981:A:G
Gene:: ZNF225 (Varview), ZNF225-AS1 (Varview)
Functional Consequence:: 5_prime_UTR_variant,upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000015/4 (TOPMED)
G=0.000029/4 (GnomAD)
HGVS:: NC_000019.10:g.44111982A>G, NC_000019.9:g.44616135A>G, XM_011527286.3:c.-384A>G, XM_011527286.2:c.-384A>G

Select item 14889205975.

rs1488920597 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 19:44107802 (GRCh38)
19:44611955 (GRCh37)
Canonical SPDI:: NC_000019.10:44107801:A:C
Gene:: ZNF224 (Varview), ZNF225-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000019.10:g.44107802A>C, NC_000019.9:g.44611955A>C, NG_051221.1:g.18474A>C, NM_013398.5:c.1642A>C, NM_013398.4:c.1642A>C, NM_013398.3:c.1642A>C, NM_013398.2:c.1642A>C, NM_001321645.3:c.1642A>C, NM_001321645.2:c.1642A>C, NM_001321645.1:c.1642A>C, NR_033341.1:n.898T>G, NM_005774.1:c.1390A>C, NP_037530.2:p.Ser548Arg, NP_001308574.1:p.Ser548Arg

Select item 14885200416.

rs1488520041 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 19:44110622 (GRCh38)
19:44614775 (GRCh37)
Canonical SPDI:: NC_000019.10:44110621:T:G
Gene:: ZNF225 (Varview), ZNF225-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.02074/246 (ALFA)
G=0.013/38 (KOREAN)
T=0.4375/14 (SGDP_PRJ)
HGVS:: NC_000019.10:g.44110622T>G, NC_000019.9:g.44614775T>G, NG_051221.1:g.21294T>G

Select item 14881939537.

rs1488193953 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 19:44110269 (GRCh38)
19:44614422 (GRCh37)
Canonical SPDI:: NC_000019.10:44110268:T:C
Gene:: ZNF224 (Varview), ZNF225 (Varview), ZNF225-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,500B_downstream_variant,downstream_transcript_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000019.10:g.44110269T>C, NC_000019.9:g.44614422T>C, NG_051221.1:g.20941T>C

Select item 14881606488.

rs1488160648 [Homo sapiens]

Variant type:: DELINS
Alleles:: GT>- [Show Flanks]
Chromosome:: 19:44111071 (GRCh38)
19:44615224 (GRCh37)
Canonical SPDI:: NC_000019.10:44111067:TGTGT:TGT
Gene:: ZNF225 (Varview), ZNF225-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TGT=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000015/4 (TOPMED)
HGVS:: NC_000019.10:g.44111069GT[1], NC_000019.9:g.44615222GT[1], NG_051221.1:g.21741GT[1]

Select item 14878574699.

rs1487857469 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:44113983 (GRCh38)
19:44618136 (GRCh37)
Canonical SPDI:: NC_000019.10:44113982:C:T
Gene:: ZNF225 (Varview), ZNF225-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.44113983C>T, NC_000019.9:g.44618136C>T

Select item 148784263910.

rs1487842639 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:44110932 (GRCh38)
19:44615085 (GRCh37)
Canonical SPDI:: NC_000019.10:44110931:G:A
Gene:: ZNF225 (Varview), ZNF225-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency
MAF:: A=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.44110932G>A, NC_000019.9:g.44615085G>A, NG_051221.1:g.21604G>A

Select item 148718157011.

rs1487181570 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:44110739 (GRCh38)
19:44614892 (GRCh37)
Canonical SPDI:: NC_000019.10:44110738:C:T
Gene:: ZNF225 (Varview), ZNF225-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000015/4 (TOPMED)
HGVS:: NC_000019.10:g.44110739C>T, NC_000019.9:g.44614892C>T, NG_051221.1:g.21411C>T

Select item 148680935812.

rs1486809358 [Homo sapiens]

Variant type:: DELINS
Alleles:: TG>- [Show Flanks]
Chromosome:: 19:44109774 (GRCh38)
19:44613927 (GRCh37)
Canonical SPDI:: NC_000019.10:44109771:TGTG:TG
Gene:: ZNF224 (Varview), ZNF225 (Varview), ZNF225-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TGTG=0.000071/1 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
-=0.000035/1 (TOMMO)
HGVS:: NC_000019.10:g.44109772TG[1], NC_000019.9:g.44613925TG[1], NG_051221.1:g.20444TG[1], NM_013398.5:c.*1488TG[1], NM_013398.4:c.*1488TG[1], NM_013398.3:c.*1488TG[1], NM_001321645.3:c.*1488TG[1], NM_001321645.2:c.*1488TG[1], NM_001321645.1:c.*1488TG[1]

Select item 148660405613.

rs1486604056 [Homo sapiens]

Variant type:: DEL
Alleles:: TA>- [Show Flanks]
Chromosome:: 19:44109205 (GRCh38)
19:44613358 (GRCh37)
Canonical SPDI:: NC_000019.10:44109204:TA:
Gene:: ZNF224 (Varview), ZNF225-AS1 (Varview)
Functional Consequence:: intron_variant,3_prime_UTR_variant
Validated:: by frequency
MAF:: -=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.44109205_44109206del, NC_000019.9:g.44613358_44613359del, NG_051221.1:g.19877_19878del, NM_013398.5:c.*921_*922del, NM_013398.4:c.*921_*922del, NM_013398.3:c.*921_*922del, NM_001321645.3:c.*921_*922del, NM_001321645.2:c.*921_*922del, NM_001321645.1:c.*921_*922del

Select item 148648803714.

rs1486488037 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:44105043 (GRCh38)
19:44609196 (GRCh37)
Canonical SPDI:: NC_000019.10:44105042:C:T
Gene:: ZNF224 (Varview), ZNF225-AS1 (Varview)
Functional Consequence:: downstream_transcript_variant,intron_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000026/7 (TOPMED)
HGVS:: NC_000019.10:g.44105043C>T, NC_000019.9:g.44609196C>T, NG_051221.1:g.15715C>T

Select item 148644797815.

rs1486447978 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: 19:44105851 (GRCh38)
19:44610004 (GRCh37)
Canonical SPDI:: NC_000019.10:44105850:TTTTTTT:TTTTTT
Gene:: ZNF224 (Varview), ZNF225-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTT=0.000142/2 (ALFA)
-=0.000045/12 (TOPMED)
-=0.000078/11 (GnomAD)
HGVS:: NC_000019.10:g.44105857del, NC_000019.9:g.44610010del, NG_051221.1:g.16529del, NR_033341.1:n.2849del, NM_005774.1:c.-555del

Select item 148632738316.

rs1486327383 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 19:44107276 (GRCh38)
19:44611429 (GRCh37)
Canonical SPDI:: NC_000019.10:44107275:T:G
Gene:: ZNF224 (Varview), ZNF225-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,stop_gained,coding_sequence_variant
Validated:: by frequency,by cluster
MAF:: G=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.44107276T>G, NC_000019.9:g.44611429T>G, NG_051221.1:g.17948T>G, NM_013398.5:c.1116T>G, NM_013398.4:c.1116T>G, NM_013398.3:c.1116T>G, NM_013398.2:c.1116T>G, NM_001321645.3:c.1116T>G, NM_001321645.2:c.1116T>G, NM_001321645.1:c.1116T>G, NR_033341.1:n.1424A>C, NM_005774.1:c.864T>G, NP_037530.2:p.Tyr372Ter, NP_001308574.1:p.Tyr372Ter

Select item 148627797117.

rs1486277971 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 19:44108106 (GRCh38)
19:44612259 (GRCh37)
Canonical SPDI:: NC_000019.10:44108105:A:G
Gene:: ZNF224 (Varview), ZNF225-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.44108106A>G, NC_000019.9:g.44612259A>G, NG_051221.1:g.18778A>G, NM_013398.5:c.1946A>G, NM_013398.4:c.1946A>G, NM_013398.3:c.1946A>G, NM_013398.2:c.1946A>G, NM_001321645.3:c.1946A>G, NM_001321645.2:c.1946A>G, NM_001321645.1:c.1946A>G, NR_033341.1:n.594T>C, NM_005774.1:c.1694A>G, NP_037530.2:p.Glu649Gly, NP_001308574.1:p.Glu649Gly

Select item 148589124418.

rs1485891244 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 19:44113163 (GRCh38)
19:44617316 (GRCh37)
Canonical SPDI:: NC_000019.10:44113162:G:A
Gene:: ZNF225 (Varview), ZNF225-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000011/3 (TOPMED)
HGVS:: NC_000019.10:g.44113163G>A, NC_000019.9:g.44617316G>A, NR_033341.1:n.21C>T

Select item 148556039219.

rs1485560392 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 19:44107289 (GRCh38)
19:44611442 (GRCh37)
Canonical SPDI:: NC_000019.10:44107288:T:C,NC_000019.10:44107288:T:G
Gene:: ZNF224 (Varview), ZNF225-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,missense_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
G=0.000004/1 (GnomAD_exomes)
C=0.000007/1 (GnomAD)
HGVS:: NC_000019.10:g.44107289T>C, NC_000019.10:g.44107289T>G, NC_000019.9:g.44611442T>C, NC_000019.9:g.44611442T>G, NG_051221.1:g.17961T>C, NG_051221.1:g.17961T>G, NM_013398.5:c.1129T>C, NM_013398.5:c.1129T>G, NM_013398.4:c.1129T>C, NM_013398.4:c.1129T>G, NM_013398.3:c.1129T>C, NM_013398.3:c.1129T>G, NM_013398.2:c.1129T>C, NM_013398.2:c.1129T>G, NM_001321645.3:c.1129T>C, NM_001321645.3:c.1129T>G, NM_001321645.2:c.1129T>C, NM_001321645.2:c.1129T>G, NM_001321645.1:c.1129T>C, NM_001321645.1:c.1129T>G, NR_033341.1:n.1411A>G, NR_033341.1:n.1411A>C, NM_005774.1:c.877T>C, NM_005774.1:c.877T>G, NP_037530.2:p.Cys377Arg, NP_037530.2:p.Cys377Gly, NP_001308574.1:p.Cys377Arg, NP_001308574.1:p.Cys377Gly

Select item 148548027620.

rs1485480276 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 19:44105792 (GRCh38)
19:44609945 (GRCh37)
Canonical SPDI:: NC_000019.10:44105791:C:T
Gene:: ZNF224 (Varview), ZNF225-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000142/2 (ALFA)
T=0.000064/9 (GnomAD)
T=0.000072/19 (TOPMED)
T=0.000156/1 (1000Genomes)
HGVS:: NC_000019.10:g.44105792C>T, NC_000019.9:g.44609945C>T, NG_051221.1:g.16464C>T, NR_033341.1:n.2908G>A, NM_005774.1:c.-620C>T

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