SNP Links for Gene (Select 100498859) - SNP

Links from Gene

Items: 1 to 20 of 2838

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Select item 14914071351.

rs1491407135 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 3:157095883 (GRCh38)
3:156813673 (GRCh37)
Canonical SPDI:: NC_000003.12:157095883:A:AA
Gene:: LINC00880 (Varview), LINC00881 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: AA=0./0 (ALFA)
HGVS:: NC_000003.12:g.157095884dup, NC_000003.11:g.156813673dup

Select item 14907392552.

rs1490739255 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:157090511 (GRCh38)
3:156808300 (GRCh37)
Canonical SPDI:: NC_000003.12:157090510:G:A
Gene:: LINC00880 (Varview), LINC00881 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000003.12:g.157090511G>A, NC_000003.11:g.156808300G>A

Select item 14907138073.

rs1490713807 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 3:157091640 (GRCh38)
3:156809429 (GRCh37)
Canonical SPDI:: NC_000003.12:157091639:G:T
Gene:: LINC00880 (Varview), LINC00881 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.157091640G>T, NC_000003.11:g.156809429G>T

Select item 14905976334.

rs1490597633 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:157097292 (GRCh38)
3:156815081 (GRCh37)
Canonical SPDI:: NC_000003.12:157097291:G:A
Gene:: LINC00880 (Varview), LINC00881 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000003.12:g.157097292G>A, NC_000003.11:g.156815081G>A

Select item 14904622655.

rs1490462265 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 3:157098865 (GRCh38)
3:156816654 (GRCh37)
Canonical SPDI:: NC_000003.12:157098864:A:C
Gene:: LINC00880 (Varview), LINC00881 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.157098865A>C, NC_000003.11:g.156816654A>C

Select item 14899700736.

rs1489970073 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:157099488 (GRCh38)
3:156817277 (GRCh37)
Canonical SPDI:: NC_000003.12:157099487:A:G
Gene:: LINC00880 (Varview), LINC00881 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000071/1 (TOMMO)
HGVS:: NC_000003.12:g.157099488A>G, NC_000003.11:g.156817277A>G, NR_034008.1:n.248A>G

Select item 14899441837.

rs1489944183 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 3:157100507 (GRCh38)
3:156818296 (GRCh37)
Canonical SPDI:: NC_000003.12:157100506:G:A,NC_000003.12:157100506:G:C
Gene:: LINC00880 (Varview), LINC00881 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.157100507G>A, NC_000003.12:g.157100507G>C, NC_000003.11:g.156818296G>A, NC_000003.11:g.156818296G>C

Select item 14897639698.

rs1489763969 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 3:157088722 (GRCh38)
3:156806511 (GRCh37)
Canonical SPDI:: NC_000003.12:157088721:G:T
Gene:: LINC00880 (Varview), LINC00881 (Varview), LINC02029 (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.157088722G>T, NC_000003.11:g.156806511G>T

Select item 14892694429.

rs1489269442 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:157096739 (GRCh38)
3:156814528 (GRCh37)
Canonical SPDI:: NC_000003.12:157096738:A:G
Gene:: LINC00880 (Varview), LINC00881 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
HGVS:: NC_000003.12:g.157096739A>G, NC_000003.11:g.156814528A>G

Select item 148911001310.

rs1489110013 [Homo sapiens]

Variant type:: SNV:
Alleles:: A>-
Chromosome:: no mapping
Canonical SPDI:

Select item 148905285511.

rs1489052855 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:157093430 (GRCh38)
3:156811219 (GRCh37)
Canonical SPDI:: NC_000003.12:157093429:G:A
Gene:: LINC00880 (Varview), LINC00881 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.157093430G>A, NC_000003.11:g.156811219G>A

Select item 148888716112.

rs1488887161 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 3:157097330 (GRCh38)
3:156815119 (GRCh37)
Canonical SPDI:: NC_000003.12:157097329:T:C
Gene:: LINC00880 (Varview), LINC00881 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000003.12:g.157097330T>C, NC_000003.11:g.156815119T>C

Select item 148880603613.

rs1488806036 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 3:157097641 (GRCh38)
3:156815430 (GRCh37)
Canonical SPDI:: NC_000003.12:157097640:T:G
Gene:: LINC00880 (Varview), LINC00881 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.157097641T>G, NC_000003.11:g.156815430T>G

Select item 148841701414.

rs1488417014 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:157094494 (GRCh38)
3:156812283 (GRCh37)
Canonical SPDI:: NC_000003.12:157094493:G:A
Gene:: LINC00880 (Varview), LINC00881 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000019/5 (TOPMED)
A=0.000035/1 (TOMMO)
HGVS:: NC_000003.12:g.157094494G>A, NC_000003.11:g.156812283G>A

Select item 148823073715.

rs1488230737 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:157098321 (GRCh38)
3:156816110 (GRCh37)
Canonical SPDI:: NC_000003.12:157098320:G:A
Gene:: LINC00880 (Varview), LINC00881 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.157098321G>A, NC_000003.11:g.156816110G>A

Select item 148812944216.

rs1488129442 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 3:157099628 (GRCh38)
3:156817417 (GRCh37)
Canonical SPDI:: NC_000003.12:157099627:T:C
Gene:: LINC00880 (Varview), LINC00881 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
HGVS:: NC_000003.12:g.157099628T>C, NC_000003.11:g.156817417T>C

Select item 148788790617.

rs1487887906 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:157097523 (GRCh38)
3:156815312 (GRCh37)
Canonical SPDI:: NC_000003.12:157097522:G:A
Gene:: LINC00880 (Varview), LINC00881 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000003.12:g.157097523G>A, NC_000003.11:g.156815312G>A

Select item 148741346618.

rs1487413466 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 3:157101268 (GRCh38)
3:156819057 (GRCh37)
Canonical SPDI:: NC_000003.12:157101267:A:T
Gene:: LINC00880 (Varview), LINC00881 (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.157101268A>T, NC_000003.11:g.156819057A>T

Select item 148710725919.

rs1487107259 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 3:157089286 (GRCh38)
3:156807075 (GRCh37)
Canonical SPDI:: NC_000003.12:157089285:G:C
Gene:: LINC00880 (Varview), LINC00881 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.157089286G>C, NC_000003.11:g.156807075G>C

Select item 148674085320.

rs1486740853 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:157094377 (GRCh38)
3:156812166 (GRCh37)
Canonical SPDI:: NC_000003.12:157094376:A:G
Gene:: LINC00880 (Varview), LINC00881 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.157094377A>G, NC_000003.11:g.156812166A>G

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