SNP Links for Gene (Select 100505515) - SNP

Links from Gene

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Select item 14899945471.

rs1489994547 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 20:12950146 (GRCh38)
20:12930794 (GRCh37)
Canonical SPDI:: NC_000020.11:12950145:C:G
Gene:: LINC01723 (Varview), LINC01722 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000020.11:g.12950146C>G, NC_000020.10:g.12930794C>G

Select item 14897941412.

rs1489794141 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 20:12950491 (GRCh38)
20:12931139 (GRCh37)
Canonical SPDI:: NC_000020.11:12950490:G:A
Gene:: LINC01723 (Varview), LINC01722 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.12950491G>A, NC_000020.10:g.12931139G>A, NR_109870.1:n.152G>A

Select item 14895399163.

rs1489539916 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 20:12951108 (GRCh38)
20:12931756 (GRCh37)
Canonical SPDI:: NC_000020.11:12951107:A:C
Gene:: LINC01723 (Varview), LINC01722 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000011/3 (TOPMED)
HGVS:: NC_000020.11:g.12951108A>C, NC_000020.10:g.12931756A>C

Select item 14888052034.

rs1488805203 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 20:12950749 (GRCh38)
20:12931397 (GRCh37)
Canonical SPDI:: NC_000020.11:12950748:C:T
Gene:: LINC01723 (Varview), LINC01722 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000020.11:g.12950749C>T, NC_000020.10:g.12931397C>T, NR_109870.1:n.410C>T

Select item 14880664525.

rs1488066452 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 20:12951134 (GRCh38)
20:12931782 (GRCh37)
Canonical SPDI:: NC_000020.11:12951133:A:G
Gene:: LINC01723 (Varview), LINC01722 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000020.11:g.12951134A>G, NC_000020.10:g.12931782A>G

Select item 14878336376.

rs1487833637 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 20:12949644 (GRCh38)
20:12930292 (GRCh37)
Canonical SPDI:: NC_000020.11:12949643:G:A
Gene:: LINC01723 (Varview), LINC01722 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.12949644G>A, NC_000020.10:g.12930292G>A

Select item 14877161257.

rs1487716125 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 20:12950757 (GRCh38)
20:12931405 (GRCh37)
Canonical SPDI:: NC_000020.11:12950756:C:G,NC_000020.11:12950756:C:T
Gene:: LINC01723 (Varview), LINC01722 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000021/3 (GnomAD)
HGVS:: NC_000020.11:g.12950757C>G, NC_000020.11:g.12950757C>T, NC_000020.10:g.12931405C>G, NC_000020.10:g.12931405C>T, NR_109870.1:n.418C>G, NR_109870.1:n.418C>T

Select item 14846786618.

rs1484678661 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 20:12949579 (GRCh38)
20:12930227 (GRCh37)
Canonical SPDI:: NC_000020.11:12949578:A:G
Gene:: LINC01723 (Varview), LINC01722 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.12949579A>G, NC_000020.10:g.12930227A>G

Select item 14836294359.

rs1483629435 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 20:12951005 (GRCh38)
20:12931653 (GRCh37)
Canonical SPDI:: NC_000020.11:12951004:C:T
Gene:: LINC01723 (Varview), LINC01722 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.12951005C>T, NC_000020.10:g.12931653C>T

Select item 148278546510.

rs1482785465 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 20:12949367 (GRCh38)
20:12930015 (GRCh37)
Canonical SPDI:: NC_000020.11:12949366:T:C
Gene:: LINC01723 (Varview), LINC01722 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000020.11:g.12949367T>C, NC_000020.10:g.12930015T>C

Select item 148273616411.

rs1482736164 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 20:12948368 (GRCh38)
20:12929016 (GRCh37)
Canonical SPDI:: NC_000020.11:12948367:T:C
Gene:: LINC01723 (Varview), LINC01722 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000020.11:g.12948368T>C, NC_000020.10:g.12929016T>C

Select item 148161583612.

rs1481615836 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 20:12949762 (GRCh38)
20:12930410 (GRCh37)
Canonical SPDI:: NC_000020.11:12949761:C:T
Gene:: LINC01723 (Varview), LINC01722 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000020.11:g.12949762C>T, NC_000020.10:g.12930410C>T

Select item 148149996913.

rs1481499969 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 20:12950873 (GRCh38)
20:12931521 (GRCh37)
Canonical SPDI:: NC_000020.11:12950872:T:C
Gene:: LINC01723 (Varview), LINC01722 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000015/4 (TOPMED)
HGVS:: NC_000020.11:g.12950873T>C, NC_000020.10:g.12931521T>C

Select item 148055302314.

rs1480553023 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: 20:12948809 (GRCh38)
20:12929457 (GRCh37)
Canonical SPDI:: NC_000020.11:12948808:TT:T
Gene:: LINC01723 (Varview), LINC01722 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: TT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000020.11:g.12948810del, NC_000020.10:g.12929458del

Select item 147983900315.

rs1479839003 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 20:12950738 (GRCh38)
20:12931386 (GRCh37)
Canonical SPDI:: NC_000020.11:12950737:A:C
Gene:: LINC01723 (Varview), LINC01722 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000020.11:g.12950738A>C, NC_000020.10:g.12931386A>C, NR_109870.1:n.399A>C

Select item 147951195816.

rs1479511958 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 20:12950281 (GRCh38)
20:12930929 (GRCh37)
Canonical SPDI:: NC_000020.11:12950280:C:T
Gene:: LINC01723 (Varview), LINC01722 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000020.11:g.12950281C>T, NC_000020.10:g.12930929C>T

Select item 147797865317.

rs1477978653 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 20:12952032 (GRCh38)
20:12932680 (GRCh37)
Canonical SPDI:: NC_000020.11:12952031:T:A,NC_000020.11:12952031:T:C
Gene:: LINC01723 (Varview), LINC01722 (Varview)
Functional Consequence:: 500B_downstream_variant,non_coding_transcript_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000020.11:g.12952032T>A, NC_000020.11:g.12952032T>C, NC_000020.10:g.12932680T>A, NC_000020.10:g.12932680T>C, NR_109868.1:n.488A>T, NR_109868.1:n.488A>G

Select item 147792737818.

rs1477927378 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 20:12949647 (GRCh38)
20:12930295 (GRCh37)
Canonical SPDI:: NC_000020.11:12949646:T:C
Gene:: LINC01723 (Varview), LINC01722 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000447/2 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000446/2 (Estonian)
HGVS:: NC_000020.11:g.12949647T>C, NC_000020.10:g.12930295T>C

Select item 147569490419.

rs1475694904 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 20:12948861 (GRCh38)
20:12929509 (GRCh37)
Canonical SPDI:: NC_000020.11:12948860:A:C
Gene:: LINC01723 (Varview), LINC01722 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.12948861A>C, NC_000020.10:g.12929509A>C

Select item 147497738120.

rs1474977381 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 20:12950124 (GRCh38)
20:12930772 (GRCh37)
Canonical SPDI:: NC_000020.11:12950123:A:T
Gene:: LINC01723 (Varview), LINC01722 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000020.11:g.12950124A>T, NC_000020.10:g.12930772A>T

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