SNP Links for Gene (Select 100505534) - SNP

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Links from Gene

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Select item 14912094871.

rs1491209487 [Homo sapiens]

Variant type:: DEL
Alleles:: TA>- [Show Flanks]
Chromosome:: 15:39924953 (GRCh38)
15:40217154 (GRCh37)
Canonical SPDI:: NC_000015.10:39924952:TA:
Gene:: GPR176-DT (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0./0 (GnomAD)
-=0.000106/3 (TOMMO)
HGVS:: NC_000015.10:g.39924953_39924954del, NC_000015.9:g.40217154_40217155del, XR_109178.7:n.2803_2804del, XR_109178.6:n.2810_2811del, XR_109178.5:n.2803_2804del, XR_109178.4:n.2801_2802del, XR_109178.3:n.2779_2780del, XR_429516.5:n.2831_2832del, XR_429516.4:n.2838_2839del, XR_429516.3:n.2831_2832del, XR_429516.2:n.2829_2830del, XR_429516.1:n.2807_2808del

Select item 14906622962.

rs1490662296 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->ATT [Show Flanks]
Chromosome:: 15:39926378 (GRCh38)
15:40218580 (GRCh37)
Canonical SPDI:: NC_000015.10:39926378:TTATT:TTATTATT
Validated:: by frequency,by alfa
MAF:: TTATTATT=0./0 (ALFA)
TTA=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.39926381_39926383dup, NC_000015.9:g.40218582_40218584dup

Select item 14906370503.

rs1490637050 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 15:39925242 (GRCh38)
15:40217443 (GRCh37)
Canonical SPDI:: NC_000015.10:39925241:G:T
Gene:: GPR176-DT (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000019/5 (TOPMED)
HGVS:: NC_000015.10:g.39925242G>T, NC_000015.9:g.40217443G>T

Select item 14897297454.

rs1489729745 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 15:39919583 (GRCh38)
15:40211784 (GRCh37)
Canonical SPDI:: NC_000015.10:39919582:G:A,NC_000015.10:39919582:G:C
Gene:: GPR176 (Varview), GPR176-DT (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000015.10:g.39919583G>A, NC_000015.10:g.39919583G>C, NC_000015.9:g.40211784G>A, NC_000015.9:g.40211784G>C

Select item 14896145595.

rs1489614559 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 15:39920953 (GRCh38)
15:40213154 (GRCh37)
Canonical SPDI:: NC_000015.10:39920952:G:T
Gene:: GPR176 (Varview), GPR176-DT (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
HGVS:: NC_000015.10:g.39920953G>T, NC_000015.9:g.40213154G>T

Select item 14891871976.

rs1489187197 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 15:39920523 (GRCh38)
15:40212724 (GRCh37)
Canonical SPDI:: NC_000015.10:39920522:T:G
Gene:: GPR176 (Varview), GPR176-DT (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
HGVS:: NC_000015.10:g.39920523T>G, NC_000015.9:g.40212724T>G, NM_007223.2:c.-497A>C, NM_001271854.1:c.-497A>C

Select item 14891039227.

rs1489103922 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:39923078 (GRCh38)
15:40215279 (GRCh37)
Canonical SPDI:: NC_000015.10:39923077:A:G
Gene:: GPR176-DT (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.39923078A>G, NC_000015.9:g.40215279A>G, XR_109178.7:n.928A>G, XR_109178.6:n.935A>G, XR_109178.5:n.928A>G, XR_109178.4:n.926A>G, XR_109178.3:n.904A>G, XR_109178.2:n.904A>G, XR_429516.5:n.956A>G, XR_429516.4:n.963A>G, XR_429516.3:n.956A>G, XR_429516.2:n.954A>G, XR_429516.1:n.932A>G

Select item 14889507938.

rs1488950793 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 15:39924351 (GRCh38)
15:40216552 (GRCh37)
Canonical SPDI:: NC_000015.10:39924350:T:A
Gene:: GPR176-DT (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000015.10:g.39924351T>A, NC_000015.9:g.40216552T>A, XR_109178.7:n.2201T>A, XR_109178.6:n.2208T>A, XR_109178.5:n.2201T>A, XR_109178.4:n.2199T>A, XR_109178.3:n.2177T>A, XR_109178.2:n.2177T>A, XR_429516.5:n.2229T>A, XR_429516.4:n.2236T>A, XR_429516.3:n.2229T>A, XR_429516.2:n.2227T>A, XR_429516.1:n.2205T>A

Select item 14887726849.

rs1488772684 [Homo sapiens]

Variant type:: DELINS
Alleles:: GAG>- [Show Flanks]
Chromosome:: 15:39920501 (GRCh38)
15:40212702 (GRCh37)
Canonical SPDI:: NC_000015.10:39920496:GGAGGAG:GGAG
Gene:: GPR176 (Varview), GPR176-DT (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGAG=0./0 (ALFA)
-=0.000053/14 (TOPMED)
-=0.000078/11 (GnomAD)
-=0.000156/1 (1000Genomes)
HGVS:: NC_000015.10:g.39920498GAG[1], NC_000015.9:g.40212699GAG[1], NM_007223.2:c.-476TCC[1], NM_001271854.1:c.-476TCC[1]

Select item 148850344610.

rs1488503446 [Homo sapiens]

Variant type:: DELINS
Alleles:: TCTG>- [Show Flanks]
Chromosome:: 15:39922475 (GRCh38)
15:40214676 (GRCh37)
Canonical SPDI:: NC_000015.10:39922472:TGTCTG:TG
Gene:: GPR176-DT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TG=0.000071/1 (ALFA)
-=0.000034/9 (TOPMED)
-=0.000043/6 (GnomAD)
HGVS:: NC_000015.10:g.39922475_39922478del, NC_000015.9:g.40214676_40214679del

Select item 148825488611.

rs1488254886 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:39922415 (GRCh38)
15:40214616 (GRCh37)
Canonical SPDI:: NC_000015.10:39922414:A:G
Gene:: GPR176-DT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000021/3 (GnomAD)
G=0.000034/9 (TOPMED)
HGVS:: NC_000015.10:g.39922415A>G, NC_000015.9:g.40214616A>G

Select item 148814032312.

rs1488140323 [Homo sapiens]

Variant type:: DELINS
Alleles:: AGACAAGAGTCCCAAGAG>- [Show Flanks]
Chromosome:: 15:39922720 (GRCh38)
15:40214921 (GRCh37)
Canonical SPDI:: NC_000015.10:39922710:TCCCAAGAGAGACAAGAGTCCCAAGAG:TCCCAAGAG
Gene:: GPR176-DT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TCCCAAGAG=0./0 (ALFA)
-=0.000008/2 (TOPMED)
-=0.000021/3 (GnomAD)
HGVS:: NC_000015.10:g.39922720_39922737del, NC_000015.9:g.40214921_40214938del

Select item 148751961213.

rs1487519612 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:39923447 (GRCh38)
15:40215648 (GRCh37)
Canonical SPDI:: NC_000015.10:39923446:A:G
Gene:: GPR176-DT (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000026/7 (TOPMED)
G=0.000029/4 (GnomAD)
HGVS:: NC_000015.10:g.39923447A>G, NC_000015.9:g.40215648A>G, XR_109178.7:n.1297A>G, XR_109178.6:n.1304A>G, XR_109178.5:n.1297A>G, XR_109178.4:n.1295A>G, XR_109178.3:n.1273A>G, XR_109178.2:n.1273A>G, XR_429516.5:n.1325A>G, XR_429516.4:n.1332A>G, XR_429516.3:n.1325A>G, XR_429516.2:n.1323A>G, XR_429516.1:n.1301A>G

Select item 148707748614.

rs1487077486 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:39919966 (GRCh38)
15:40212167 (GRCh37)
Canonical SPDI:: NC_000015.10:39919965:C:T
Gene:: GPR176 (Varview), GPR176-DT (Varview)
Functional Consequence:: 5_prime_UTR_variant,upstream_transcript_variant,missense_variant,coding_sequence_variant,2KB_upstream_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
T=0.000389/7 (TOMMO)
HGVS:: NC_000015.10:g.39919966C>T, NC_000015.9:g.40212167C>T, NM_007223.3:c.61G>A, NM_007223.2:c.61G>A, XM_017021878.3:c.-176G>A, XM_017021878.2:c.-176G>A, XM_017021878.1:c.-176G>A, NM_001271854.2:c.61G>A, NM_001271854.1:c.61G>A, NP_009154.1:p.Ala21Thr, NP_001258783.1:p.Ala21Thr

Select item 148701703015.

rs1487017030 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 15:39920960 (GRCh38)
15:40213161 (GRCh37)
Canonical SPDI:: NC_000015.10:39920959:G:A,NC_000015.10:39920959:G:T
Gene:: GPR176 (Varview), GPR176-DT (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000015.10:g.39920960G>A, NC_000015.10:g.39920960G>T, NC_000015.9:g.40213161G>A, NC_000015.9:g.40213161G>T

Select item 148681705016.

rs1486817050 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 15:39921409 (GRCh38)
15:40213610 (GRCh37)
Canonical SPDI:: NC_000015.10:39921408:T:A
Gene:: GPR176 (Varview), GPR176-DT (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000015/4 (TOPMED)
HGVS:: NC_000015.10:g.39921409T>A, NC_000015.9:g.40213610T>A, XR_109178.7:n.387T>A, XR_109178.6:n.394T>A, XR_109178.5:n.387T>A, XR_109178.4:n.385T>A, XR_109178.3:n.363T>A, XR_109178.2:n.363T>A, XR_429516.5:n.387T>A, XR_429516.4:n.394T>A, XR_429516.3:n.387T>A, XR_429516.2:n.385T>A, XR_429516.1:n.363T>A

Select item 148680236717.

rs1486802367 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 15:39922394 (GRCh38)
15:40214595 (GRCh37)
Canonical SPDI:: NC_000015.10:39922393:A:G
Gene:: GPR176-DT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000015.10:g.39922394A>G, NC_000015.9:g.40214595A>G

Select item 148676445418.

rs1486764454 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 15:39920729 (GRCh38)
15:40212930 (GRCh37)
Canonical SPDI:: NC_000015.10:39920728:C:T
Gene:: GPR176 (Varview), GPR176-DT (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000015.10:g.39920729C>T, NC_000015.9:g.40212930C>T, NM_007223.2:c.-703G>A, NM_001271854.1:c.-703G>A

Select item 148617880019.

rs1486178800 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 15:39919900 (GRCh38)
15:40212101 (GRCh37)
Canonical SPDI:: NC_000015.10:39919899:A:C
Gene:: GPR176 (Varview), GPR176-DT (Varview)
Functional Consequence:: 5_prime_UTR_variant,upstream_transcript_variant,missense_variant,coding_sequence_variant,2KB_upstream_variant,genic_upstream_transcript_variant
Validated:: by frequency
MAF:: C=0.000007/1 (GnomAD_exomes)
HGVS:: NC_000015.10:g.39919900A>C, NC_000015.9:g.40212101A>C, NM_007223.3:c.127T>G, NM_007223.2:c.127T>G, XM_017021878.3:c.-110T>G, XM_017021878.2:c.-110T>G, XM_017021878.1:c.-110T>G, NM_001271854.2:c.127T>G, NM_001271854.1:c.127T>G, NP_009154.1:p.Phe43Val, NP_001258783.1:p.Phe43Val

Select item 148582627220.

rs1485826272 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 15:39922013 (GRCh38)
15:40214214 (GRCh37)
Canonical SPDI:: NC_000015.10:39922012:T:C,NC_000015.10:39922012:T:G
Gene:: GPR176 (Varview), GPR176-DT (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
C=0.000014/2 (GnomAD)
C=0.000015/4 (TOPMED)
HGVS:: NC_000015.10:g.39922013T>C, NC_000015.10:g.39922013T>G, NC_000015.9:g.40214214T>C, NC_000015.9:g.40214214T>G