SNP Links for Gene (Select 100505570) - SNP

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Select item 14896770551.

rs1489677055 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:1688779 (GRCh38)
11:1710009 (GRCh37)
Canonical SPDI:: NC_000011.10:1688778:A:G
Gene:: LINC02708 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.1688779A>G, NC_000011.9:g.1710009A>G, NW_025791792.1:g.428755A>G, NT_187657.1:g.162557A>G, NT_187584.1:g.171016A>G, XR_930978.4:n.635A>G, XR_930978.3:n.635A>G, XR_930978.2:n.635A>G, XR_930978.1:n.991A>G, XR_951789.4:n.635A>G, XR_951789.3:n.635A>G, XR_951789.2:n.635A>G, XR_951789.1:n.991A>G, XR_001756578.3:n.635A>G, XR_001756578.2:n.646A>G, XR_001756578.1:n.370A>G, XR_007062548.1:n.573A>G, XR_007069532.1:n.635A>G, XR_007069533.1:n.573A>G, XR_007068642.1:n.573A>G

Select item 14887353622.

rs1488735362 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:1686759 (GRCh38)
11:1707989 (GRCh37)
Canonical SPDI:: NC_000011.10:1686758:C:T
Gene:: FAM99B (Varview), LINC02708 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.00101/12 (ALFA)
T=0.00216/6 (KOREAN)
C=0.5/2 (SGDP_PRJ)
HGVS:: NC_000011.10:g.1686759C>T, NC_000011.9:g.1707989C>T, NW_025791792.1:g.426735C>T, NT_187657.1:g.160517C>T, NT_187584.1:g.168996C>T

Select item 14886847893.

rs1488684789 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 11:1686400 (GRCh38)
11:1707630 (GRCh37)
Canonical SPDI:: NC_000011.10:1686399:C:A,NC_000011.10:1686399:C:T
Gene:: FAM99B (Varview), LINC02708 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.1686400C>A, NC_000011.10:g.1686400C>T, NC_000011.9:g.1707630C>A, NC_000011.9:g.1707630C>T, NW_025791792.1:g.426376C>A, NW_025791792.1:g.426376C>T, NT_187657.1:g.159896C>A, NT_187657.1:g.159896C>T, NT_187584.1:g.168637C>A, NT_187584.1:g.168637C>T

Select item 14881557964.

rs1488155796 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:1688262 (GRCh38)
11:1709492 (GRCh37)
Canonical SPDI:: NC_000011.10:1688261:C:T
Gene:: LINC02708 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000011.10:g.1688262C>T, NC_000011.9:g.1709492C>T, NW_025791792.1:g.428238C>T, NT_187657.1:g.162040C>T, NT_187584.1:g.170499C>T, XR_930978.4:n.291C>T, XR_930978.3:n.291C>T, XR_930978.2:n.291C>T, XR_930978.1:n.647C>T, XR_951789.4:n.291C>T, XR_951789.3:n.291C>T, XR_951789.2:n.291C>T, XR_951789.1:n.647C>T, XR_001756578.3:n.291C>T, XR_001756578.2:n.302C>T, XR_001756578.1:n.26C>T, XR_007062548.1:n.229C>T, XR_007069532.1:n.291C>T, XR_007069533.1:n.229C>T, XR_007068642.1:n.229C>T

Select item 14877483485.

rs1487748348 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 11:1688528 (GRCh38)
11:1709758 (GRCh37)
Canonical SPDI:: NC_000011.10:1688527:C:A,NC_000011.10:1688527:C:G
Gene:: LINC02708 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
G=0.000035/1 (TOMMO)
A=0.000043/6 (GnomAD)
HGVS:: NC_000011.10:g.1688528C>A, NC_000011.10:g.1688528C>G, NC_000011.9:g.1709758C>A, NC_000011.9:g.1709758C>G, NW_025791792.1:g.428504C>A, NW_025791792.1:g.428504C>G, NT_187657.1:g.162306C>A, NT_187657.1:g.162306C>G, NT_187584.1:g.170765C>A, NT_187584.1:g.170765C>G, XR_930978.4:n.384C>A, XR_930978.4:n.384C>G, XR_930978.3:n.384C>A, XR_930978.3:n.384C>G, XR_930978.2:n.384C>A, XR_930978.2:n.384C>G, XR_930978.1:n.740C>A, XR_930978.1:n.740C>G, XR_951789.4:n.384C>A, XR_951789.4:n.384C>G, XR_951789.3:n.384C>A, XR_951789.3:n.384C>G, XR_951789.2:n.384C>A, XR_951789.2:n.384C>G, XR_951789.1:n.740C>A, XR_951789.1:n.740C>G, XR_001756578.3:n.384C>A, XR_001756578.3:n.384C>G, XR_001756578.2:n.395C>A, XR_001756578.2:n.395C>G, XR_001756578.1:n.119C>A, XR_001756578.1:n.119C>G, XR_007062548.1:n.322C>A, XR_007062548.1:n.322C>G, XR_007069532.1:n.384C>A, XR_007069532.1:n.384C>G, XR_007069533.1:n.322C>A, XR_007069533.1:n.322C>G, XR_007068642.1:n.322C>A, XR_007068642.1:n.322C>G

Select item 14873217556.

rs1487321755 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:1689254 (GRCh38)
11:1710484 (GRCh37)
Canonical SPDI:: NC_000011.10:1689253:A:G
Gene:: LINC02708 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.1689254A>G, NC_000011.9:g.1710484A>G, NW_025791792.1:g.429230A>G, NT_187657.1:g.163032A>G, NT_187584.1:g.171491A>G, XR_930978.4:n.1110A>G, XR_007062548.1:n.1048A>G

Select item 14866733007.

rs1486673300 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:1687192 (GRCh38)
11:1708422 (GRCh37)
Canonical SPDI:: NC_000011.10:1687191:C:T
Gene:: FAM99B (Varview), LINC02708 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000011.10:g.1687192C>T, NC_000011.9:g.1708422C>T, NW_025791792.1:g.427168C>T, NT_187657.1:g.160970C>T, NT_187584.1:g.169429C>T

Select item 14865147678.

rs1486514767 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 11:1687818 (GRCh38)
11:1709048 (GRCh37)
Canonical SPDI:: NC_000011.10:1687817:G:T
Gene:: LINC02708 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000011.10:g.1687818G>T, NC_000011.9:g.1709048G>T, NW_025791792.1:g.427794G>T, NT_187657.1:g.161596G>T, NT_187584.1:g.170055G>T

Select item 14862214309.

rs1486221430 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 11:1686834 (GRCh38)
11:1708064 (GRCh37)
Canonical SPDI:: NC_000011.10:1686833:C:G
Gene:: FAM99B (Varview), LINC02708 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.1686834C>G, NC_000011.9:g.1708064C>G, NW_025791792.1:g.426810C>G, NT_187657.1:g.160590C>G, NT_187584.1:g.169071C>G

Select item 148619026210.

rs1486190262 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:1687357 (GRCh38)
11:1708587 (GRCh37)
Canonical SPDI:: NC_000011.10:1687356:A:G
Gene:: FAM99B (Varview), LINC02708 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000011.10:g.1687357A>G, NC_000011.9:g.1708587A>G, NW_025791792.1:g.427333A>G, NT_187657.1:g.161135A>G, NT_187584.1:g.169594A>G, XR_007068771.1:n.302T>C

Select item 148610200411.

rs1486102004 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 11:1685920 (GRCh38)
11:1707150 (GRCh37)
Canonical SPDI:: NC_000011.10:1685919:C:A,NC_000011.10:1685919:C:T
Gene:: FAM99B (Varview), LINC02708 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000022/3 (GnomAD)
HGVS:: NC_000011.10:g.1685920C>A, NC_000011.10:g.1685920C>T, NC_000011.9:g.1707150C>A, NC_000011.9:g.1707150C>T, NW_025791792.1:g.425896C>A, NW_025791792.1:g.425896C>T, NT_187657.1:g.159416C>A, NT_187657.1:g.159416C>T, NT_187584.1:g.168157C>A, NT_187584.1:g.168157C>T

Select item 148604765012.

rs1486047650 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G,T [Show Flanks]
Chromosome:: 11:1686365 (GRCh38)
11:1707595 (GRCh37)
Canonical SPDI:: NC_000011.10:1686364:C:A,NC_000011.10:1686364:C:G,NC_000011.10:1686364:C:T
Gene:: FAM99B (Varview), LINC02708 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
T=0.000035/1 (TOMMO)
T=0.000185/26 (GnomAD)
T=0.000312/2 (1000Genomes)
HGVS:: NC_000011.10:g.1686365C>A, NC_000011.10:g.1686365C>G, NC_000011.10:g.1686365C>T, NC_000011.9:g.1707595C>A, NC_000011.9:g.1707595C>G, NC_000011.9:g.1707595C>T, NW_025791792.1:g.426341C>A, NW_025791792.1:g.426341C>G, NW_025791792.1:g.426341C>T, NT_187657.1:g.159861C>A, NT_187657.1:g.159861C>G, NT_187657.1:g.159861C>T, NT_187584.1:g.168602C>A, NT_187584.1:g.168602C>G, NT_187584.1:g.168602C>T

Select item 148576537713.

rs1485765377 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 11:1687247 (GRCh38)
11:1708477 (GRCh37)
Canonical SPDI:: NC_000011.10:1687246:C:A
Gene:: FAM99B (Varview), LINC02708 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000011.10:g.1687247C>A, NC_000011.9:g.1708477C>A, NW_025791792.1:g.427223C>A, NT_187657.1:g.161025C>A, NT_187584.1:g.169484C>A

Select item 148545069114.

rs1485450691 [Homo sapiens]

Variant type:: SNV:
Alleles:: T>-
Chromosome:: no mapping
Canonical SPDI:

Select item 148540042415.

rs1485400424 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:1687009 (GRCh38)
11:1708239 (GRCh37)
Canonical SPDI:: NC_000011.10:1687008:C:T
Gene:: FAM99B (Varview), LINC02708 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000011.10:g.1687009C>T, NC_000011.9:g.1708239C>T, NW_025791792.1:g.426985C>T, NT_187657.1:g.160786C>T, NT_187584.1:g.169246C>T

Select item 148465495316.

rs1484654953 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G,T [Show Flanks]
Chromosome:: 11:1686799 (GRCh38)
11:1708029 (GRCh37)
Canonical SPDI:: NC_000011.10:1686798:C:A,NC_000011.10:1686798:C:G,NC_000011.10:1686798:C:T
Gene:: FAM99B (Varview), LINC02708 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0./0 (GnomAD)
T=0.00096/15 (TOMMO)
T=0.0158/43 (KOREAN)
C=0.5/3 (SGDP_PRJ)
HGVS:: NC_000011.10:g.1686799C>A, NC_000011.10:g.1686799C>G, NC_000011.10:g.1686799C>T, NC_000011.9:g.1708029C>A, NC_000011.9:g.1708029C>G, NC_000011.9:g.1708029C>T, NW_025791792.1:g.426775C>A, NW_025791792.1:g.426775C>G, NW_025791792.1:g.426775C>T, NT_187657.1:g.160557T>C, NT_187657.1:g.160557T>A, NT_187657.1:g.160557T>G, NT_187584.1:g.169036C>A, NT_187584.1:g.169036C>G, NT_187584.1:g.169036C>T

Select item 148457877617.

rs1484578776 [Homo sapiens]

Variant type:: DELINS
Alleles:: CTTCCTTCTCTGCTCCCTCCCTCCCTCC>- [Show Flanks]
Chromosome:: 11:1686684 (GRCh38)
11:1707914 (GRCh37)
Canonical SPDI:: NC_000011.10:1686674:CCTCCCTCCCTTCCTTCTCTGCTCCCTCCCTCCCTCC:CCTCCCTCC
Gene:: FAM99B (Varview), LINC02708 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CCTCCCTCC=0.000169/2 (ALFA)
-=0.000516/55 (GnomAD)
HGVS:: NC_000011.10:g.1686684_1686711del, NC_000011.9:g.1707914_1707941del, NW_025791792.1:g.426660_426687del, NT_187657.1:g.160479_160480insTCCCCC, NT_187657.1:g.160456_160477del, NT_187584.1:g.168921_168948del

Select item 148430522918.

rs1484305229 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:1686295 (GRCh38)
11:1707525 (GRCh37)
Canonical SPDI:: NC_000011.10:1686294:C:T
Gene:: FAM99B (Varview), LINC02708 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.1686295C>T, NC_000011.9:g.1707525C>T, NW_025791792.1:g.426271C>T, NT_187657.1:g.159791C>T, NT_187584.1:g.168532C>T

Select item 148427320419.

rs1484273204 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:1686670 (GRCh38)
11:1707900 (GRCh37)
Canonical SPDI:: NC_000011.10:1686669:C:T
Gene:: FAM99B (Varview), LINC02708 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.1686670C>T, NC_000011.9:g.1707900C>T, NW_025791792.1:g.426646C>T, NT_187657.1:g.160441C>T, NT_187584.1:g.168907C>T

Select item 148422485420.

rs1484224854 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 11:1686857 (GRCh38)
11:1708087 (GRCh37)
Canonical SPDI:: NC_000011.10:1686856:CCC:CC
Gene:: FAM99B (Varview), LINC02708 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: CC=0./0 (ALFA)
-=0.00007/1 (TOMMO)
HGVS:: NC_000011.10:g.1686859del, NC_000011.9:g.1708089del, NW_025791792.1:g.426835del, NT_187657.1:g.160628del, NT_187584.1:g.169096del

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