SNP Links for Gene (Select 100505576) - SNP

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Select item 14913063461.

rs1491306346 [Homo sapiens]

Variant type:: INS
Alleles:: ->TTT [Show Flanks]
Chromosome:: 17:38925135 (GRCh38)
17:37081389 (GRCh37)
Canonical SPDI:: NC_000017.11:38925135::TTT
Gene:: LINC00672 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
HGVS:: NC_000017.11:g.38925135_38925136insTTT, NC_000017.10:g.37081388_37081389insTTT

Select item 14912196842.

rs1491219684 [Homo sapiens]

Variant type:: SNV:
Alleles:: GC>-
Chromosome:: no mapping
Canonical SPDI:

Select item 14911548023.

rs1491154802 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->G [Show Flanks]
Chromosome:: 17:38924129 (GRCh38)
17:37080383 (GRCh37)
Canonical SPDI:: NC_000017.11:38924129:GGGGG:GGGGGG
Gene:: LINC00672 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: GGGGGG=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000017.11:g.38924134dup, NC_000017.10:g.37080387dup

Select item 14909468404.

rs1490946840 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 17:38925028 (GRCh38)
17:37081281 (GRCh37)
Canonical SPDI:: NC_000017.11:38925027:T:C
Gene:: LINC00672 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.38925028T>C, NC_000017.10:g.37081281T>C

Select item 14895198535.

rs1489519853 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 17:38927055 (GRCh38)
17:37083308 (GRCh37)
Canonical SPDI:: NC_000017.11:38927054:T:C
Gene:: LINC00672 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000156/1 (1000Genomes)
HGVS:: NC_000017.11:g.38927055T>C, NC_000017.10:g.37083308T>C, NR_038847.1:n.1363T>C

Select item 14884425966.

rs1488442596 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CG [Show Flanks]
Chromosome:: 17:38927121 (GRCh38)
17:37083375 (GRCh37)
Canonical SPDI:: NC_000017.11:38927121:G:GCG
Gene:: LINC00672 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: GCG=0./0 (ALFA)
GC=0.000172/23 (GnomAD)
HGVS:: NC_000017.11:g.38927122_38927123insCG, NC_000017.10:g.37083375_37083376insCG, NR_038847.1:n.1430_1431insCG

Select item 14883520567.

rs1488352056 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:38928005 (GRCh38)
17:37084258 (GRCh37)
Canonical SPDI:: NC_000017.11:38928004:G:A
Gene:: LINC00672 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.38928005G>A, NC_000017.10:g.37084258G>A, NR_038847.1:n.2313G>A

Select item 14883074498.

rs1488307449 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 17:38926787 (GRCh38)
17:37083040 (GRCh37)
Canonical SPDI:: NC_000017.11:38926786:T:C
Gene:: LINC00672 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000017.11:g.38926787T>C, NC_000017.10:g.37083040T>C, NR_038847.1:n.1095T>C

Select item 14882500199.

rs1488250019 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:38924302 (GRCh38)
17:37080555 (GRCh37)
Canonical SPDI:: NC_000017.11:38924301:C:T
Gene:: LINC00672 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
HGVS:: NC_000017.11:g.38924302C>T, NC_000017.10:g.37080555C>T

Select item 148746086910.

rs1487460869 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 17:38926968 (GRCh38)
17:37083221 (GRCh37)
Canonical SPDI:: NC_000017.11:38926967:T:C
Gene:: LINC00672 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000014/2 (GnomAD)
C=0.000015/4 (TOPMED)
HGVS:: NC_000017.11:g.38926968T>C, NC_000017.10:g.37083221T>C, NR_038847.1:n.1276T>C

Select item 148618014611.

rs1486180146 [Homo sapiens]

Variant type:: DELINS
Alleles:: CGTGTGTGTGTGTGTGTG>- [Show Flanks]
Chromosome:: 17:38927119 (GRCh38)
17:37083372 (GRCh37)
Canonical SPDI:: NC_000017.11:38927101:GTGTGTGTGTGTGTGTGCGTGTGTGTGTGTGTGTG:GTGTGTGTGTGTGTGTG
Gene:: LINC00672 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GTGTGTGTGTGTGTGTG=0.000214/3 (ALFA)
-=0.000144/20 (GnomAD)
-=0.000178/47 (TOPMED)
HGVS:: NC_000017.11:g.38927119_38927136del, NC_000017.10:g.37083372_37083389del, NR_038847.1:n.1427_1444del

Select item 148540259112.

rs1485402591 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 17:38928594 (GRCh38)
17:37084847 (GRCh37)
Canonical SPDI:: NC_000017.11:38928593:T:C
Gene:: LINC00672 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.38928594T>C, NC_000017.10:g.37084847T>C, NR_038847.1:n.2902T>C

Select item 148514972713.

rs1485149727 [Homo sapiens]

Variant type:: DEL
Alleles:: C>- [Show Flanks]
Chromosome:: 17:38924897 (GRCh38)
17:37081150 (GRCh37)
Canonical SPDI:: NC_000017.11:38924896:C:
Gene:: LINC00672 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000014/2 (GnomAD)
-=0.000023/6 (TOPMED)
HGVS:: NC_000017.11:g.38924897del, NC_000017.10:g.37081150del

Select item 148505872214.

rs1485058722 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 17:38927351 (GRCh38)
17:37083604 (GRCh37)
Canonical SPDI:: NC_000017.11:38927350:C:G
Gene:: LINC00672 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000021/3 (GnomAD)
HGVS:: NC_000017.11:g.38927351C>G, NC_000017.10:g.37083604C>G, NR_038847.1:n.1659C>G

Select item 148490139215.

rs1484901392 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 17:38928757 (GRCh38)
17:37085010 (GRCh37)
Canonical SPDI:: NC_000017.11:38928756:A:G
Gene:: LINC00672 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000017.11:g.38928757A>G, NC_000017.10:g.37085010A>G, NR_038847.1:n.3065A>G

Select item 148469045816.

rs1484690458 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:38929661 (GRCh38)
17:37085914 (GRCh37)
Canonical SPDI:: NC_000017.11:38929660:C:T
Gene:: LINC00672 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000017.11:g.38929661C>T, NC_000017.10:g.37085914C>T

Select item 148346899917.

rs1483468999 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 17:38926421 (GRCh38)
17:37082674 (GRCh37)
Canonical SPDI:: NC_000017.11:38926420:T:C
Gene:: LINC00672 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000017.11:g.38926421T>C, NC_000017.10:g.37082674T>C, NR_038847.1:n.729T>C

Select item 148341886518.

rs1483418865 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:38924146 (GRCh38)
17:37080399 (GRCh37)
Canonical SPDI:: NC_000017.11:38924145:G:A
Gene:: LINC00672 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000066/1 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
A=0.000223/1 (Estonian)
HGVS:: NC_000017.11:g.38924146G>A, NC_000017.10:g.37080399G>A

Select item 148260258519.

rs1482602585 [Homo sapiens]

Variant type:: DEL
Alleles:: GCA>- [Show Flanks]
Chromosome:: 17:38924679 (GRCh38)
17:37080932 (GRCh37)
Canonical SPDI:: NC_000017.11:38924678:GCA:
Gene:: LINC00672 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
HGVS:: NC_000017.11:g.38924679_38924681del, NC_000017.10:g.37080932_37080934del

Select item 148232470820.

rs1482324708 has merged into rs1262514019 [Homo sapiens]

Variant type:: DELINS
Alleles:: ATTA>-,ATTAATTA [Show Flanks]
Chromosome:: 17:38924226 (GRCh38)
17:37080479 (GRCh37)
Canonical SPDI:: NC_000017.11:38924210:TTAATTAATTAATTAATTA:TTAATTAATTAATTA,NC_000017.11:38924210:TTAATTAATTAATTAATTA:TTAATTAATTAATTAATTAATTA
Gene:: LINC00672 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTAATTAATTAATTAATTAATTA=0./0 (ALFA)
TTAA=0.000014/2 (GnomAD)
-=0.00003/8 (TOPMED)
-=0.000468/3 (1000Genomes)
HGVS:: NC_000017.11:g.38924214ATTA[3], NC_000017.11:g.38924214ATTA[5], NC_000017.10:g.37080467ATTA[3], NC_000017.10:g.37080467ATTA[5]

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