SNP Links for Gene (Select 100505588) - SNP

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Select item 14897993861.

rs1489799386 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 9:124009192 (GRCh38)
9:126771471 (GRCh37)
Canonical SPDI:: NC_000009.12:124009191:G:T
Gene:: LHX2-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.124009192G>T, NC_000009.11:g.126771471G>T, NR_135129.1:n.205C>A

Select item 14893848682.

rs1489384868 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:124006849 (GRCh38)
9:126769128 (GRCh37)
Canonical SPDI:: NC_000009.12:124006848:G:A
Gene:: LHX2-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.124006849G>A, NC_000009.11:g.126769128G>A, NR_135129.1:n.1574C>T

Select item 14893101353.

rs1489310135 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 9:124007491 (GRCh38)
9:126769770 (GRCh37)
Canonical SPDI:: NC_000009.12:124007490:C:A,NC_000009.12:124007490:C:G
Gene:: LHX2-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
HGVS:: NC_000009.12:g.124007491C>A, NC_000009.12:g.124007491C>G, NC_000009.11:g.126769770C>A, NC_000009.11:g.126769770C>G, NR_135129.1:n.932G>T, NR_135129.1:n.932G>C

Select item 14891904894.

rs1489190489 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:124007850 (GRCh38)
9:126770129 (GRCh37)
Canonical SPDI:: NC_000009.12:124007849:C:T
Gene:: LHX2-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.124007850C>T, NC_000009.11:g.126770129C>T, NR_135129.1:n.573G>A

Select item 14888324665.

rs1488832466 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 9:124010991 (GRCh38)
9:126773270 (GRCh37)
Canonical SPDI:: NC_000009.12:124010990:C:T
Gene:: LHX2 (Varview), LHX2-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000015/4 (TOPMED)
HGVS:: NC_000009.12:g.124010991C>T, NC_000009.11:g.126773270C>T

Select item 14887250676.

rs1488725067 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 9:124007970 (GRCh38)
9:126770249 (GRCh37)
Canonical SPDI:: NC_000009.12:124007969:G:T
Gene:: LHX2-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD_exomes)
HGVS:: NC_000009.12:g.124007970G>T, NC_000009.11:g.126770249G>T, NR_135129.1:n.453C>A

Select item 14879754197.

rs1487975419 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 9:124009705 (GRCh38)
9:126771984 (GRCh37)
Canonical SPDI:: NC_000009.12:124009704:T:A,NC_000009.12:124009704:T:C
Gene:: LHX2-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
HGVS:: NC_000009.12:g.124009705T>A, NC_000009.12:g.124009705T>C, NC_000009.11:g.126771984T>A, NC_000009.11:g.126771984T>C

Select item 14874544158.

rs1487454415 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:124011158 (GRCh38)
9:126773437 (GRCh37)
Canonical SPDI:: NC_000009.12:124011157:G:A
Gene:: LHX2 (Varview), LHX2-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.00003/8 (TOPMED)
HGVS:: NC_000009.12:g.124011158G>A, NC_000009.11:g.126773437G>A

Select item 14874313589.

rs1487431358 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:124008022 (GRCh38)
9:126770301 (GRCh37)
Canonical SPDI:: NC_000009.12:124008021:T:C
Gene:: LHX2-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency
MAF:: C=0.000007/1 (GnomAD_exomes)
HGVS:: NC_000009.12:g.124008022T>C, NC_000009.11:g.126770301T>C, NR_135129.1:n.401A>G

Select item 148719893010.

rs1487198930 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 9:124009970 (GRCh38)
9:126772249 (GRCh37)
Canonical SPDI:: NC_000009.12:124009969:T:A
Gene:: LHX2 (Varview), LHX2-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000034/9 (TOPMED)
A=0.000318/5 (TOMMO)
A=0.001711/5 (KOREAN)
A=0.002729/5 (Korea1K)
HGVS:: NC_000009.12:g.124009970T>A, NC_000009.11:g.126772249T>A

Select item 148611481611.

rs1486114816 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 9:124005932 (GRCh38)
9:126768211 (GRCh37)
Canonical SPDI:: NC_000009.12:124005931:C:G
Gene:: LHX2-AS1 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.124005932C>G, NC_000009.11:g.126768211C>G

Select item 148603727512.

rs1486037275 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 9:124006623 (GRCh38)
9:126768902 (GRCh37)
Canonical SPDI:: NC_000009.12:124006622:T:C
Gene:: LHX2-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.124006623T>C, NC_000009.11:g.126768902T>C, NR_135129.1:n.1800A>G

Select item 148328027413.

rs1483280274 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 9:124005804 (GRCh38)
9:126768083 (GRCh37)
Canonical SPDI:: NC_000009.12:124005803:C:G,NC_000009.12:124005803:C:T
Gene:: LHX2-AS1 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000023/6 (TOPMED)
G=0.000029/4 (GnomAD)
T=0.000156/1 (1000Genomes)
HGVS:: NC_000009.12:g.124005804C>G, NC_000009.12:g.124005804C>T, NC_000009.11:g.126768083C>G, NC_000009.11:g.126768083C>T

Select item 148297728614.

rs1482977286 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->ACTAT [Show Flanks]
Chromosome:: 9:124010268 (GRCh38)
9:126772548 (GRCh37)
Canonical SPDI:: NC_000009.12:124010268:ACTAT:ACTATACTAT
Gene:: LHX2 (Varview), LHX2-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: ACTATACTAT=0./0 (ALFA)
ACTAT=0.000053/14 (TOPMED)
HGVS:: NC_000009.12:g.124010269_124010273dup, NC_000009.11:g.126772548_126772552dup

Select item 148264448315.

rs1482644483 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 9:124009473 (GRCh38)
9:126771752 (GRCh37)
Canonical SPDI:: NC_000009.12:124009472:C:A,NC_000009.12:124009472:C:T
Gene:: LHX2-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
A=0.000019/2 (GnomAD)
HGVS:: NC_000009.12:g.124009473C>A, NC_000009.12:g.124009473C>T, NC_000009.11:g.126771752C>A, NC_000009.11:g.126771752C>T

Select item 148245015916.

rs1482450159 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 9:124009200 (GRCh38)
9:126771479 (GRCh37)
Canonical SPDI:: NC_000009.12:124009199:C:A,NC_000009.12:124009199:C:T
Gene:: LHX2-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000009.12:g.124009200C>A, NC_000009.12:g.124009200C>T, NC_000009.11:g.126771479C>A, NC_000009.11:g.126771479C>T, NR_135129.1:n.197G>T, NR_135129.1:n.197G>A

Select item 148110369617.

rs1481103696 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 9:124009972 (GRCh38)
9:126772251 (GRCh37)
Canonical SPDI:: NC_000009.12:124009971:G:T
Gene:: LHX2 (Varview), LHX2-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000009.12:g.124009972G>T, NC_000009.11:g.126772251G>T

Select item 147940486118.

rs1479404861 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 9:124007891 (GRCh38)
9:126770170 (GRCh37)
Canonical SPDI:: NC_000009.12:124007890:G:A,NC_000009.12:124007890:G:C
Gene:: LHX2-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
C=0.000007/1 (GnomAD_exomes)
A=0.000014/2 (GnomAD)
HGVS:: NC_000009.12:g.124007891G>A, NC_000009.12:g.124007891G>C, NC_000009.11:g.126770170G>A, NC_000009.11:g.126770170G>C, NR_135129.1:n.532C>T, NR_135129.1:n.532C>G

Select item 147831321519.

rs1478313215 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 9:124010773 (GRCh38)
9:126773052 (GRCh37)
Canonical SPDI:: NC_000009.12:124010772:G:A
Gene:: LHX2 (Varview), LHX2-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.124010773G>A, NC_000009.11:g.126773052G>A

Select item 147806846920.

rs1478068469 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 9:124007060 (GRCh38)
9:126769339 (GRCh37)
Canonical SPDI:: NC_000009.12:124007059:G:A,NC_000009.12:124007059:G:C
Gene:: LHX2-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000009.12:g.124007060G>A, NC_000009.12:g.124007060G>C, NC_000009.11:g.126769339G>A, NC_000009.11:g.126769339G>C, NR_135129.1:n.1363C>T, NR_135129.1:n.1363C>G

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