SNP Links for Gene (Select 100505636) - SNP

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Links from Gene

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Select item 14915672761.

rs1491567276 [Homo sapiens]

Variant type:: DELINS
Alleles:: GCCC>-,GCCCGCCC,GCCCGCCCGCCC [Show Flanks]
Chromosome:: 5:140108031 (GRCh38)
5:139487616 (GRCh37)
Canonical SPDI:: NC_000005.10:140108026:GCCCGCCC:GCCC,NC_000005.10:140108026:GCCCGCCC:GCCCGCCCGCCC,NC_000005.10:140108026:GCCCGCCC:GCCCGCCCGCCCGCCC
Gene:: MALINC1 (Varview), LOC124900193 (Varview)
Functional Consequence:: 3_prime_UTR_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GCCCGCCC=0.00006/1 (ALFA)
-=0.00006/1 (GnomAD)
GCCCGCCC=0.00007/2 (TOMMO)
HGVS:: NC_000005.10:g.140108027GCCC[1], NC_000005.10:g.140108027GCCC[3], NC_000005.10:g.140108027GCCC[4], NC_000005.9:g.139487612GCCC[1], NC_000005.9:g.139487612GCCC[3], NC_000005.9:g.139487612GCCC[4], XM_047417990.1:c.*25GGGC[1], XM_047417990.1:c.*25GGGC[3], XM_047417990.1:c.*25GGGC[4], XM_047417989.1:c.*25GGGC[1], XM_047417989.1:c.*25GGGC[3], XM_047417989.1:c.*25GGGC[4]

Select item 14914762992.

rs1491476299 [Homo sapiens]

Variant type:: DEL
Alleles:: AG>- [Show Flanks]
Chromosome:: 5:140108026 (GRCh38)
5:139487611 (GRCh37)
Canonical SPDI:: NC_000005.10:140108025:AG:
Gene:: MALINC1 (Varview), LOC124900193 (Varview)
Functional Consequence:: 3_prime_UTR_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by cluster
MAF:: -=0.01002/168 (TOMMO)
-=0.03685/236 (1000Genomes)
HGVS:: NC_000005.10:g.140108026_140108027del, NC_000005.9:g.139487611_139487612del, XM_047417990.1:c.*32_*33del, XM_047417989.1:c.*32_*33del

Select item 14905609693.

rs1490560969 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 5:140104033 (GRCh38)
5:139483618 (GRCh37)
Canonical SPDI:: NC_000005.10:140104032:C:G
Gene:: MALINC1 (Varview), LOC124900193 (Varview)
Functional Consequence:: 3_prime_UTR_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000005.10:g.140104033C>G, NC_000005.9:g.139483618C>G, NR_102739.1:n.2027G>C, XM_047417990.1:c.*768G>C, XM_047417989.1:c.*751G>C, NR_102740.1:n.1390G>C, NR_102741.1:n.1109G>C

Select item 14905394374.

rs1490539437 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 5:140107915 (GRCh38)
5:139487500 (GRCh37)
Canonical SPDI:: NC_000005.10:140107914:A:G
Gene:: MALINC1 (Varview), LOC124900193 (Varview)
Functional Consequence:: 3_prime_UTR_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.140107915A>G, NC_000005.9:g.139487500A>G, NR_102739.1:n.98T>C, XM_047417990.1:c.*144T>C, XM_047417989.1:c.*144T>C, NR_102740.1:n.98T>C, NR_102741.1:n.98T>C

Select item 14902489335.

rs1490248933 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 5:140104386 (GRCh38)
5:139483971 (GRCh37)
Canonical SPDI:: NC_000005.10:140104385:T:C
Gene:: MALINC1 (Varview), LOC124900193 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.140104386T>C, NC_000005.9:g.139483971T>C

Select item 14900730896.

rs1490073089 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 5:140108165 (GRCh38)
5:139487750 (GRCh37)
Canonical SPDI:: NC_000005.10:140108164:T:C
Gene:: MALINC1 (Varview), LOC124900193 (Varview)
Functional Consequence:: upstream_transcript_variant,missense_variant,2KB_upstream_variant,coding_sequence_variant
Validated:: by frequency,by alfa
MAF:: C=0.00143/17 (ALFA)
C=0.05486/157 (KOREAN)
HGVS:: NC_000005.10:g.140108165T>C, NC_000005.9:g.139487750T>C, XM_047417990.1:c.821A>G, XM_047417989.1:c.821A>G, XP_047273946.1:p.Glu274Gly, XP_047273945.1:p.Glu274Gly

Select item 14897876177.

rs1489787617 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 5:140107643 (GRCh38)
5:139487228 (GRCh37)
Canonical SPDI:: NC_000005.10:140107642:G:T
Gene:: MALINC1 (Varview), LOC124900193 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000005.10:g.140107643G>T, NC_000005.9:g.139487228G>T, NR_102739.1:n.370C>A, NR_102740.1:n.370C>A, NR_102741.1:n.370C>A

Select item 14896939458.

rs1489693945 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:140102431 (GRCh38)
5:139482016 (GRCh37)
Canonical SPDI:: NC_000005.10:140102430:C:T
Gene:: MALINC1 (Varview), LOC124900193 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.140102431C>T, NC_000005.9:g.139482016C>T

Select item 14894026809.

rs1489402680 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G,T [Show Flanks]
Chromosome:: 5:140108132 (GRCh38)
5:139487717 (GRCh37)
Canonical SPDI:: NC_000005.10:140108131:C:A,NC_000005.10:140108131:C:G,NC_000005.10:140108131:C:T
Gene:: MALINC1 (Varview), LOC124900193 (Varview)
Functional Consequence:: upstream_transcript_variant,missense_variant,2KB_upstream_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.00003/8 (TOPMED)
G=0.000106/2 (TOMMO)
A=0.000695/2 (KOREAN)
HGVS:: NC_000005.10:g.140108132C>A, NC_000005.10:g.140108132C>G, NC_000005.10:g.140108132C>T, NC_000005.9:g.139487717C>A, NC_000005.9:g.139487717C>G, NC_000005.9:g.139487717C>T, XM_047417990.1:c.854G>T, XM_047417990.1:c.854G>C, XM_047417990.1:c.854G>A, XM_047417989.1:c.854G>T, XM_047417989.1:c.854G>C, XM_047417989.1:c.854G>A, XP_047273946.1:p.Gly285Val, XP_047273946.1:p.Gly285Ala, XP_047273946.1:p.Gly285Glu, XP_047273945.1:p.Gly285Val, XP_047273945.1:p.Gly285Ala, XP_047273945.1:p.Gly285Glu

Select item 148849447810.

rs1488494478 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 5:140102907 (GRCh38)
5:139482492 (GRCh37)
Canonical SPDI:: NC_000005.10:140102906:T:C
Gene:: MALINC1 (Varview), LOC124900193 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.140102907T>C, NC_000005.9:g.139482492T>C

Select item 148842297811.

rs1488422978 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 5:140108992 (GRCh38)
5:139488577 (GRCh37)
Canonical SPDI:: NC_000005.10:140108991:G:C
Gene:: MALINC1 (Varview), LOC124900193 (Varview)
Functional Consequence:: 5_prime_UTR_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.140108992G>C, NC_000005.9:g.139488577G>C, XM_047417990.1:c.-7C>G, XM_047417989.1:c.-7C>G

Select item 148783201412.

rs1487832014 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 5:140106953 (GRCh38)
5:139486538 (GRCh37)
Canonical SPDI:: NC_000005.10:140106952:G:A,NC_000005.10:140106952:G:C
Gene:: MALINC1 (Varview), LOC124900193 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000023/6 (TOPMED)
C=0.000035/1 (TOMMO)
HGVS:: NC_000005.10:g.140106953G>A, NC_000005.10:g.140106953G>C, NC_000005.9:g.139486538G>A, NC_000005.9:g.139486538G>C, NR_102739.1:n.1060C>T, NR_102739.1:n.1060C>G

Select item 148776309213.

rs1487763092 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 5:140107639 (GRCh38)
5:139487224 (GRCh37)
Canonical SPDI:: NC_000005.10:140107638:A:G
Gene:: MALINC1 (Varview), LOC124900193 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
G=0.000015/4 (TOPMED)
HGVS:: NC_000005.10:g.140107639A>G, NC_000005.9:g.139487224A>G, NR_102739.1:n.374T>C, NR_102740.1:n.374T>C, NR_102741.1:n.374T>C

Select item 148699714614.

rs1486997146 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:140108657 (GRCh38)
5:139488242 (GRCh37)
Canonical SPDI:: NC_000005.10:140108656:C:T
Gene:: MALINC1 (Varview), LOC124900193 (Varview)
Functional Consequence:: upstream_transcript_variant,missense_variant,2KB_upstream_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000005.10:g.140108657C>T, NC_000005.9:g.139488242C>T, XM_047417990.1:c.329G>A, XM_047417989.1:c.329G>A, XP_047273946.1:p.Gly110Glu, XP_047273945.1:p.Gly110Glu

Select item 148679210015.

rs1486792100 [Homo sapiens]

Variant type:: DELINS
Alleles:: TAGA>- [Show Flanks]
Chromosome:: 5:140106575 (GRCh38)
5:139486160 (GRCh37)
Canonical SPDI:: NC_000005.10:140106572:GATAGA:GA
Gene:: MALINC1 (Varview), LOC124900193 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GA=0./0 (ALFA)
-=0.000011/3 (TOPMED)
-=0.000014/2 (GnomAD)
HGVS:: NC_000005.10:g.140106575_140106578del, NC_000005.9:g.139486160_139486163del, NR_102739.1:n.1437_1440del

Select item 148637963116.

rs1486379631 [Homo sapiens]

Variant type:: DELINS
Alleles:: C>- [Show Flanks]
Chromosome:: 5:140106001 (GRCh38)
5:139485586 (GRCh37)
Canonical SPDI:: NC_000005.10:140106000:CC:C
Gene:: MALINC1 (Varview), LOC124900193 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: CC=0./0 (ALFA)
-=0.000008/2 (TOPMED)
HGVS:: NC_000005.10:g.140106002del, NC_000005.9:g.139485587del

Select item 148530184517.

rs1485301845 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 5:140104324 (GRCh38)
5:139483909 (GRCh37)
Canonical SPDI:: NC_000005.10:140104323:C:A
Gene:: MALINC1 (Varview), LOC124900193 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000038/10 (TOPMED)
HGVS:: NC_000005.10:g.140104324C>A, NC_000005.9:g.139483909C>A

Select item 148479245418.

rs1484792454 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 5:140104231 (GRCh38)
5:139483816 (GRCh37)
Canonical SPDI:: NC_000005.10:140104230:T:C
Gene:: MALINC1 (Varview), LOC124900193 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000005.10:g.140104231T>C, NC_000005.9:g.139483816T>C

Select item 148431756119.

rs1484317561 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 5:140103752 (GRCh38)
5:139483337 (GRCh37)
Canonical SPDI:: NC_000005.10:140103751:A:T
Gene:: MALINC1 (Varview), LOC124900193 (Varview)
Functional Consequence:: 3_prime_UTR_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000005.10:g.140103752A>T, NC_000005.9:g.139483337A>T, NR_102739.1:n.2308T>A, XM_047417990.1:c.*1049T>A, XM_047417989.1:c.*1032T>A, NR_102740.1:n.1671T>A, NR_102741.1:n.1390T>A