SNP Links for Gene (Select 100505877) - SNP

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Select item 14911917951.

rs1491191795 has merged into rs71620767 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>-,TT [Show Flanks]
Chromosome:: 3:23200155 (GRCh38)
3:23241646 (GRCh37)
Canonical SPDI:: NC_000003.12:23200154:TTTTTTT:TTTTTT,NC_000003.12:23200154:TTTTTTT:TTTTTTTT
Gene:: UBE2E2-DT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTT=0./0 (ALFA)
-=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.23200161del, NC_000003.12:g.23200161dup, NC_000003.11:g.23241652del, NC_000003.11:g.23241652dup

Select item 14909627842.

rs1490962784 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:23198826 (GRCh38)
3:23240317 (GRCh37)
Canonical SPDI:: NC_000003.12:23198825:C:T
Gene:: UBE2E2-DT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000003.12:g.23198826C>T, NC_000003.11:g.23240317C>T

Select item 14900904313.

rs1490090431 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 3:23194591 (GRCh38)
3:23236082 (GRCh37)
Canonical SPDI:: NC_000003.12:23194590:C:A,NC_000003.12:23194590:C:T
Gene:: UBE2E2-DT (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000003.12:g.23194591C>A, NC_000003.12:g.23194591C>T, NC_000003.11:g.23236082C>A, NC_000003.11:g.23236082C>T

Select item 14899995764.

rs1489999576 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 3:23196957 (GRCh38)
3:23238448 (GRCh37)
Canonical SPDI:: NC_000003.12:23196956:T:G
Gene:: UBE2E2-DT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.23196957T>G, NC_000003.11:g.23238448T>G

Select item 14896547495.

rs1489654749 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 3:23203541 (GRCh38)
3:23245032 (GRCh37)
Canonical SPDI:: NC_000003.12:23203540:A:C,NC_000003.12:23203540:A:G
Gene:: UBE2E2 (Varview), UBE2E2-DT (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.00017/2 (ALFA)
C=0.04216/122 (KOREAN)
HGVS:: NC_000003.12:g.23203541A>C, NC_000003.12:g.23203541A>G, NC_000003.11:g.23245032A>C, NC_000003.11:g.23245032A>G

Select item 14893405886.

rs1489340588 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:23203904 (GRCh38)
3:23245395 (GRCh37)
Canonical SPDI:: NC_000003.12:23203903:C:T
Gene:: UBE2E2 (Varview), UBE2E2-DT (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.23203904C>T, NC_000003.11:g.23245395C>T

Select item 14890443897.

rs1489044389 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:23200780 (GRCh38)
3:23242271 (GRCh37)
Canonical SPDI:: NC_000003.12:23200779:G:A
Gene:: UBE2E2-DT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000214/3 (ALFA)
A=0.000026/7 (TOPMED)
A=0.000029/4 (GnomAD)
HGVS:: NC_000003.12:g.23200780G>A, NC_000003.11:g.23242271G>A

Select item 14888857558.

rs1488885755 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 3:23198694 (GRCh38)
3:23240185 (GRCh37)
Canonical SPDI:: NC_000003.12:23198693:C:A,NC_000003.12:23198693:C:T
Gene:: UBE2E2-DT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.00031/2 (1000Genomes)
HGVS:: NC_000003.12:g.23198694C>A, NC_000003.12:g.23198694C>T, NC_000003.11:g.23240185C>A, NC_000003.11:g.23240185C>T

Select item 14886030689.

rs1488603068 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:23195631 (GRCh38)
3:23237122 (GRCh37)
Canonical SPDI:: NC_000003.12:23195630:A:G
Gene:: UBE2E2-DT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000014/2 (GnomAD)
G=0.000019/5 (TOPMED)
HGVS:: NC_000003.12:g.23195631A>G, NC_000003.11:g.23237122A>G

Select item 148856558310.

rs1488565583 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 3:23204530 (GRCh38)
3:23246021 (GRCh37)
Canonical SPDI:: NC_000003.12:23204529:G:C
Gene:: UBE2E2 (Varview), UBE2E2-DT (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.23204530G>C, NC_000003.11:g.23246021G>C

Select item 148848653811.

rs1488486538 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 3:23196561 (GRCh38)
3:23238052 (GRCh37)
Canonical SPDI:: NC_000003.12:23196560:A:C
Gene:: UBE2E2-DT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.23196561A>C, NC_000003.11:g.23238052A>C

Select item 148847913412.

rs1488479134 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 3:23204591 (GRCh38)
3:23246082 (GRCh37)
Canonical SPDI:: NC_000003.12:23204590:T:A
Gene:: UBE2E2 (Varview), UBE2E2-DT (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.23204591T>A, NC_000003.11:g.23246082T>A

Select item 148793520713.

rs1487935207 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 3:23197185 (GRCh38)
3:23238676 (GRCh37)
Canonical SPDI:: NC_000003.12:23197184:G:T
Gene:: UBE2E2-DT (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000003.12:g.23197185G>T, NC_000003.11:g.23238676G>T

Select item 148787075614.

rs1487870756 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 3:23199300 (GRCh38)
3:23240791 (GRCh37)
Canonical SPDI:: NC_000003.12:23199299:T:A
Gene:: UBE2E2-DT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.23199300T>A, NC_000003.11:g.23240791T>A

Select item 148735116315.

rs1487351163 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 3:23204584 (GRCh38)
3:23246075 (GRCh37)
Canonical SPDI:: NC_000003.12:23204583:G:T
Gene:: UBE2E2 (Varview), UBE2E2-DT (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.23204584G>T, NC_000003.11:g.23246075G>T

Select item 148708743116.

rs1487087431 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 3:23200005 (GRCh38)
3:23241496 (GRCh37)
Canonical SPDI:: NC_000003.12:23200004:C:G,NC_000003.12:23200004:C:T
Gene:: UBE2E2-DT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000066/1 (ALFA)
T=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
G=0.000223/1 (Estonian)
HGVS:: NC_000003.12:g.23200005C>G, NC_000003.12:g.23200005C>T, NC_000003.11:g.23241496C>G, NC_000003.11:g.23241496C>T

Select item 148700873217.

rs1487008732 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:23204499 (GRCh38)
3:23245990 (GRCh37)
Canonical SPDI:: NC_000003.12:23204498:A:G
Gene:: UBE2E2 (Varview), UBE2E2-DT (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000003.12:g.23204499A>G, NC_000003.11:g.23245990A>G

Select item 148659274218.

rs1486592742 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:23201800 (GRCh38)
3:23243291 (GRCh37)
Canonical SPDI:: NC_000003.12:23201799:A:G
Gene:: UBE2E2 (Varview), UBE2E2-DT (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000008/2 (TOPMED)
HGVS:: NC_000003.12:g.23201800A>G, NC_000003.11:g.23243291A>G

Select item 148645588619.

rs1486455886 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 3:23199015 (GRCh38)
3:23240506 (GRCh37)
Canonical SPDI:: NC_000003.12:23199014:G:C
Gene:: UBE2E2-DT (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.23199015G>C, NC_000003.11:g.23240506G>C

Select item 148642066620.

rs1486420666 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:23201562 (GRCh38)
3:23243053 (GRCh37)
Canonical SPDI:: NC_000003.12:23201561:G:A
Gene:: UBE2E2 (Varview), UBE2E2-DT (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000003.12:g.23201562G>A, NC_000003.11:g.23243053G>A

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