SNP Links for Gene (Select 100506050) - SNP

Links from Gene

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Select item 14905444921.

rs1490544492 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 7:64031580 (GRCh38)
7:63491958 (GRCh37)
Canonical SPDI:: NC_000007.14:64031579:C:A,NC_000007.14:64031579:C:T
Gene:: LINC01005 (Varview), LOC105375317 (Varview)
Functional Consequence:: downstream_transcript_variant,2KB_upstream_variant,500B_downstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.64031580C>A, NC_000007.14:g.64031580C>T, NC_000007.13:g.63491958C>A, NC_000007.13:g.63491958C>T

Select item 14902335252.

rs1490233525 [Homo sapiens]

Variant type:: DELINS
Alleles:: TAG>- [Show Flanks]
Chromosome:: 7:64026871 (GRCh38)
7:63487249 (GRCh37)
Canonical SPDI:: NC_000007.14:64026868:AGTAG:AG
Gene:: LINC01005 (Varview)
Functional Consequence:: non_coding_transcript_variant
HGVS:: NC_000007.14:g.64026871_64026873del, NC_000007.13:g.63487249_63487251del, NR_039987.1:n.438_440del

Select item 14901409823.

rs1490140982 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 7:64024407 (GRCh38)
7:63484785 (GRCh37)
Canonical SPDI:: NC_000007.14:64024406:A:T
Gene:: LINC01005 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000007.14:g.64024407A>T, NC_000007.13:g.63484785A>T

Select item 14897060484.

rs1489706048 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 7:64024147 (GRCh38)
7:63484525 (GRCh37)
Canonical SPDI:: NC_000007.14:64024146:G:C
Gene:: LINC01005 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.64024147G>C, NC_000007.13:g.63484525G>C

Select item 14888581285.

rs1488858128 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 7:64026027 (GRCh38)
7:63486405 (GRCh37)
Canonical SPDI:: NC_000007.14:64026026:T:C
Gene:: LINC01005 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.64026027T>C, NC_000007.13:g.63486405T>C, NR_039987.1:n.1282A>G

Select item 14875573106.

rs1487557310 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:64028003 (GRCh38)
7:63488381 (GRCh37)
Canonical SPDI:: NC_000007.14:64028002:A:G
Gene:: LINC01005 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000011/3 (TOPMED)
HGVS:: NC_000007.14:g.64028003A>G, NC_000007.13:g.63488381A>G

Select item 14866948267.

rs1486694826 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 7:64027900 (GRCh38)
7:63488278 (GRCh37)
Canonical SPDI:: NC_000007.14:64027899:A:C
Gene:: LINC01005 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.64027900A>C, NC_000007.13:g.63488278A>C, NR_039987.1:n.195T>G

Select item 14857539548.

rs1485753954 [Homo sapiens]

Variant type:: DEL
Alleles:: A>- [Show Flanks]
Chromosome:: 7:64025175 (GRCh38)
7:63485553 (GRCh37)
Canonical SPDI:: NC_000007.14:64025174:A:
Gene:: LINC01005 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000023/6 (TOPMED)
-=0.000064/9 (GnomAD)
HGVS:: NC_000007.14:g.64025175del, NC_000007.13:g.63485553del, NR_039987.1:n.2134del

Select item 14836692019.

rs1483669201 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 7:64031028 (GRCh38)
7:63491406 (GRCh37)
Canonical SPDI:: NC_000007.14:64031027:T:G
Gene:: LINC01005 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.64031028T>G, NC_000007.13:g.63491406T>G

Select item 148345416010.

rs1483454160 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 7:64029800 (GRCh38)
7:63490178 (GRCh37)
Canonical SPDI:: NC_000007.14:64029799:A:T
Gene:: LINC01005 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.64029800A>T, NC_000007.13:g.63490178A>T

Select item 148248831111.

rs1482488311 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:64026224 (GRCh38)
7:63486602 (GRCh37)
Canonical SPDI:: NC_000007.14:64026223:G:A
Gene:: LINC01005 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.64026224G>A, NC_000007.13:g.63486602G>A, NR_039987.1:n.1085C>T

Select item 148217181412.

rs1482171814 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 7:64024465 (GRCh38)
7:63484843 (GRCh37)
Canonical SPDI:: NC_000007.14:64024464:T:C
Gene:: LINC01005 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000014/2 (GnomAD)
C=0.000023/6 (TOPMED)
HGVS:: NC_000007.14:g.64024465T>C, NC_000007.13:g.63484843T>C, NR_039987.1:n.2844A>G

Select item 148203563213.

rs1482035632 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 7:64031482 (GRCh38)
7:63491860 (GRCh37)
Canonical SPDI:: NC_000007.14:64031481:G:A,NC_000007.14:64031481:G:T
Gene:: LINC01005 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.64031482G>A, NC_000007.14:g.64031482G>T, NC_000007.13:g.63491860G>A, NC_000007.13:g.63491860G>T

Select item 148165904914.

rs1481659049 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 7:64025047 (GRCh38)
7:63485425 (GRCh37)
Canonical SPDI:: NC_000007.14:64025046:T:C,NC_000007.14:64025046:T:G
Gene:: LINC01005 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.64025047T>C, NC_000007.14:g.64025047T>G, NC_000007.13:g.63485425T>C, NC_000007.13:g.63485425T>G, NR_039987.1:n.2262A>G, NR_039987.1:n.2262A>C

Select item 148163971915.

rs1481639719 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:64024246 (GRCh38)
7:63484624 (GRCh37)
Canonical SPDI:: NC_000007.14:64024245:G:A
Gene:: LINC01005 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000007.14:g.64024246G>A, NC_000007.13:g.63484624G>A

Select item 148120479016.

rs1481204790 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:64032062 (GRCh38)
7:63492440 (GRCh37)
Canonical SPDI:: NC_000007.14:64032061:C:T
Gene:: LINC01005 (Varview), LOC105375317 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000007.14:g.64032062C>T, NC_000007.13:g.63492440C>T

Select item 148111879617.

rs1481118796 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 7:64031465 (GRCh38)
7:63491843 (GRCh37)
Canonical SPDI:: NC_000007.14:64031464:G:A
Gene:: LINC01005 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000015/4 (TOPMED)
HGVS:: NC_000007.14:g.64031465G>A, NC_000007.13:g.63491843G>A

Select item 148098240318.

rs1480982403 [Homo sapiens]

Variant type:: DEL
Alleles:: T>- [Show Flanks]
Chromosome:: 7:64028832 (GRCh38)
7:63489210 (GRCh37)
Canonical SPDI:: NC_000007.14:64028831:T:
Gene:: LINC01005 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.000071/1 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000015/4 (TOPMED)
HGVS:: NC_000007.14:g.64028832del, NC_000007.13:g.63489210del

Select item 148069683319.

rs1480696833 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 7:64028293 (GRCh38)
7:63488671 (GRCh37)
Canonical SPDI:: NC_000007.14:64028292:A:T
Gene:: LINC01005 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000007.14:g.64028293A>T, NC_000007.13:g.63488671A>T

Select item 148066815920.

rs1480668159 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 7:64030739 (GRCh38)
7:63491117 (GRCh37)
Canonical SPDI:: NC_000007.14:64030738:C:G,NC_000007.14:64030738:C:T
Gene:: LINC01005 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.64030739C>G, NC_000007.14:g.64030739C>T, NC_000007.13:g.63491117C>G, NC_000007.13:g.63491117C>T

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