SNP Links for Gene (Select 100506465) - SNP

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Select item 14914200941.

rs1491420094 has merged into rs34903480 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>-,T,TTT,TTTT,TTTTT [Show Flanks]
Chromosome:: 12:113756223 (GRCh38)
12:114194028 (GRCh37)
Canonical SPDI:: NC_000012.12:113756209:TTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000012.12:113756209:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000012.12:113756209:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000012.12:113756209:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000012.12:113756209:TTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT
Gene:: LINC01234 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTTTTTTTTT=0./0 (ALFA)
T=0.25/10 (GENOME_DK)
T=0.4265/2136 (1000Genomes)
HGVS:: NC_000012.12:g.113756223_113756224del, NC_000012.12:g.113756224del, NC_000012.12:g.113756224dup, NC_000012.12:g.113756223_113756224dup, NC_000012.12:g.113756222_113756224dup, NC_000012.11:g.114194028_114194029del, NC_000012.11:g.114194029del, NC_000012.11:g.114194029dup, NC_000012.11:g.114194028_114194029dup, NC_000012.11:g.114194027_114194029dup

Select item 14910513092.

rs1491051309 has merged into rs10622864 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAA>-,AAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 12:113773283 (GRCh38)
12:114211088 (GRCh37)
Canonical SPDI:: NC_000012.12:113773272:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAA,NC_000012.12:113773272:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000012.12:113773272:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000012.12:113773272:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000012.12:113773272:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000012.12:113773272:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000012.12:113773272:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000012.12:113773272:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000012.12:113773272:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000012.12:113773272:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000012.12:113773272:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000012.12:113773272:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000012.12:113773272:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000012.12:113773272:AAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: LINC01234 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAAAA=0./0 (ALFA)
A=0.2979/1492 (1000Genomes)
HGVS:: NC_000012.12:g.113773283_113773293del, NC_000012.12:g.113773288_113773293del, NC_000012.12:g.113773291_113773293del, NC_000012.12:g.113773292_113773293del, NC_000012.12:g.113773293del, NC_000012.12:g.113773293dup, NC_000012.12:g.113773292_113773293dup, NC_000012.12:g.113773291_113773293dup, NC_000012.12:g.113773290_113773293dup, NC_000012.12:g.113773289_113773293dup, NC_000012.12:g.113773288_113773293dup, NC_000012.12:g.113773287_113773293dup, NC_000012.12:g.113773286_113773293dup, NC_000012.12:g.113773278_113773293dup, NC_000012.11:g.114211088_114211098del, NC_000012.11:g.114211093_114211098del, NC_000012.11:g.114211096_114211098del, NC_000012.11:g.114211097_114211098del, NC_000012.11:g.114211098del, NC_000012.11:g.114211098dup, NC_000012.11:g.114211097_114211098dup, NC_000012.11:g.114211096_114211098dup, NC_000012.11:g.114211095_114211098dup, NC_000012.11:g.114211094_114211098dup, NC_000012.11:g.114211093_114211098dup, NC_000012.11:g.114211092_114211098dup, NC_000012.11:g.114211091_114211098dup, NC_000012.11:g.114211083_114211098dup

Select item 14910141053.

rs1491014105 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GC [Show Flanks]
Chromosome:: 12:113763357 (GRCh38)
12:114201163 (GRCh37)
Canonical SPDI:: NC_000012.12:113763357:GC:GCGC
Gene:: LINC01234 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GCGC=0./0 (ALFA)
GC=0.000007/1 (GnomAD)
GC=0.000011/3 (TOPMED)
HGVS:: NC_000012.12:g.113763358_113763359dup, NC_000012.11:g.114201163_114201164dup

Select item 14909867994.

rs1490986799 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 12:113760713 (GRCh38)
12:114198518 (GRCh37)
Canonical SPDI:: NC_000012.12:113760712:G:A
Gene:: LINC01234 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.113760713G>A, NC_000012.11:g.114198518G>A

Select item 14908642405.

rs1490864240 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G,T [Show Flanks]
Chromosome:: 12:113762913 (GRCh38)
12:114200718 (GRCh37)
Canonical SPDI:: NC_000012.12:113762912:A:G,NC_000012.12:113762912:A:T
Gene:: LINC01234 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.113762913A>G, NC_000012.12:g.113762913A>T, NC_000012.11:g.114200718A>G, NC_000012.11:g.114200718A>T

Select item 14908494496.

rs1490849449 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 12:113760521 (GRCh38)
12:114198326 (GRCh37)
Canonical SPDI:: NC_000012.12:113760520:G:A
Gene:: LINC01234 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.113760521G>A, NC_000012.11:g.114198326G>A

Select item 14907201327.

rs1490720132 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 12:113753422 (GRCh38)
12:114191227 (GRCh37)
Canonical SPDI:: NC_000012.12:113753421:G:A
Gene:: LINC01234 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000021/3 (GnomAD)
HGVS:: NC_000012.12:g.113753422G>A, NC_000012.11:g.114191227G>A

Select item 14906196838.

rs1490619683 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 12:113768394 (GRCh38)
12:114206199 (GRCh37)
Canonical SPDI:: NC_000012.12:113768393:A:T
Gene:: LINC01234 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.113768394A>T, NC_000012.11:g.114206199A>T

Select item 14906146929.

rs1490614692 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 12:113769476 (GRCh38)
12:114207281 (GRCh37)
Canonical SPDI:: NC_000012.12:113769475:C:A
Gene:: LINC01234 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.113769476C>A, NC_000012.11:g.114207281C>A

Select item 149055640110.

rs1490556401 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 12:113753855 (GRCh38)
12:114191660 (GRCh37)
Canonical SPDI:: NC_000012.12:113753854:T:C
Gene:: LINC01234 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000014/2 (GnomAD)
C=0.00003/8 (TOPMED)
HGVS:: NC_000012.12:g.113753855T>C, NC_000012.11:g.114191660T>C

Select item 149053073411.

rs1490530734 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 12:113752783 (GRCh38)
12:114190588 (GRCh37)
Canonical SPDI:: NC_000012.12:113752782:C:T
Gene:: LINC01234 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.113752783C>T, NC_000012.11:g.114190588C>T

Select item 149038357112.

rs1490383571 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 12:113761785 (GRCh38)
12:114199590 (GRCh37)
Canonical SPDI:: NC_000012.12:113761784:G:A
Gene:: LINC01234 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.113761785G>A, NC_000012.11:g.114199590G>A

Select item 149022213713.

rs1490222137 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 12:113762262 (GRCh38)
12:114200067 (GRCh37)
Canonical SPDI:: NC_000012.12:113762261:T:C
Gene:: LINC01234 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.113762262T>C, NC_000012.11:g.114200067T>C

Select item 149017085314.

rs1490170853 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 12:113761364 (GRCh38)
12:114199169 (GRCh37)
Canonical SPDI:: NC_000012.12:113761363:G:A,NC_000012.12:113761363:G:C
Gene:: LINC01234 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
HGVS:: NC_000012.12:g.113761364G>A, NC_000012.12:g.113761364G>C, NC_000012.11:g.114199169G>A, NC_000012.11:g.114199169G>C

Select item 149011150215.

rs1490111502 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 12:113745254 (GRCh38)
12:114183059 (GRCh37)
Canonical SPDI:: NC_000012.12:113745253:T:C
Gene:: LINC01234 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000012.12:g.113745254T>C, NC_000012.11:g.114183059T>C, NR_110026.1:n.1545A>G, NR_110025.1:n.1411A>G

Select item 149010417616.

rs1490104176 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 12:113774193 (GRCh38)
12:114211998 (GRCh37)
Canonical SPDI:: NC_000012.12:113774192:C:T
Gene:: LINC01234 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000106/2 (TOMMO)
HGVS:: NC_000012.12:g.113774193C>T, NC_000012.11:g.114211998C>T

Select item 149000030817.

rs1490000308 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 12:113746953 (GRCh38)
12:114184758 (GRCh37)
Canonical SPDI:: NC_000012.12:113746952:T:C
Gene:: LINC01234 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000015/4 (TOPMED)
C=0.000021/3 (GnomAD)
HGVS:: NC_000012.12:g.113746953T>C, NC_000012.11:g.114184758T>C

Select item 148977622018.

rs1489776220 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 12:113745941 (GRCh38)
12:114183746 (GRCh37)
Canonical SPDI:: NC_000012.12:113745940:C:T
Gene:: LINC01234 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000012.12:g.113745941C>T, NC_000012.11:g.114183746C>T, NR_110026.1:n.858G>A, NR_110025.1:n.724G>A

Select item 148968643419.

rs1489686434 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: 12:113754189 (GRCh38)
12:114191994 (GRCh37)
Canonical SPDI:: NC_000012.12:113754188:GGGGG:GGGG
Gene:: LINC01234 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: GGGG=0./0 (ALFA)
-=0.00022/4 (GnomAD)
HGVS:: NC_000012.12:g.113754193del, NC_000012.11:g.114191998del

Select item 148953006820.

rs1489530068 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 12:113750186 (GRCh38)
12:114187991 (GRCh37)
Canonical SPDI:: NC_000012.12:113750185:C:G
Gene:: LINC01234 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000012.12:g.113750186C>G, NC_000012.11:g.114187991C>G

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