SNP Links for Gene (Select 100506498) - SNP

Links from Gene

Items: 1 to 20 of 2342

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Select item 14914964931.

rs1491496493 [Homo sapiens]

Variant type:: SNV:
Alleles:: ->C
Chromosome:: no mapping
Canonical SPDI:

Select item 14914958302.

rs1491495830 [Homo sapiens]

Variant type:: DEL
Alleles:: GC>- [Show Flanks]
Chromosome:: 14:73828272 (GRCh38)
14:74294975 (GRCh37)
Canonical SPDI:: NC_000014.9:73828271:GC:
Gene:: LINC02274 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000044/6 (GnomAD)
HGVS:: NC_000014.9:g.73828272_73828273del, NC_000014.8:g.74294975_74294976del

Select item 14914711033.

rs1491471103 [Homo sapiens]

Variant type:: DELINS
Alleles:: CA>- [Show Flanks]
Chromosome:: 14:73828235 (GRCh38)
14:74294938 (GRCh37)
Canonical SPDI:: NC_000014.9:73828233:ACA:A
Gene:: LINC02274 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
-=0.001405/9 (1000Genomes)
-=0.005969/813 (GnomAD)
HGVS:: NC_000014.9:g.73828235_73828236del, NC_000014.8:g.74294938_74294939del

Select item 14914572174.

rs1491457217 [Homo sapiens]

Variant type:: DEL
Alleles:: CT>- [Show Flanks]
Chromosome:: 14:73824075 (GRCh38)
14:74290778 (GRCh37)
Canonical SPDI:: NC_000014.9:73824074:CT:
Gene:: LINC02274 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000014.9:g.73824075_73824076del, NC_000014.8:g.74290778_74290779del

Select item 14914089475.

rs1491408947 [Homo sapiens]

Variant type:: INS
Alleles:: ->TA [Show Flanks]
Chromosome:: 14:73828262 (GRCh38)
14:74294966 (GRCh37)
Canonical SPDI:: NC_000014.9:73828262::TA
Gene:: LINC02274 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: TA=0.00008/1 (ALFA)
TA=0.0001/6 (GnomAD)
HGVS:: NC_000014.9:g.73828262_73828263insTA, NC_000014.8:g.74294965_74294966insTA

Select item 14913707876.

rs1491370787 has merged into rs56135487 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAAAAAA>-,A,AA,AAA,AAAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 14:73825021 (GRCh38)
14:74291724 (GRCh37)
Canonical SPDI:: NC_000014.9:73825009:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000014.9:73825009:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000014.9:73825009:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000014.9:73825009:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000014.9:73825009:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000014.9:73825009:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000014.9:73825009:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000014.9:73825009:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000014.9:73825009:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000014.9:73825009:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000014.9:73825009:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000014.9:73825009:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000014.9:73825009:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000014.9:73825009:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000014.9:73825009:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000014.9:73825009:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000014.9:73825009:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000014.9:73825009:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000014.9:73825009:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000014.9:73825009:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000014.9:73825009:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000014.9:73825009:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000014.9:73825009:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000014.9:73825009:AAAAAAAAAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: LINC02274 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAA=0./0 (ALFA)
-=0.25/10 (GENOME_DK)
HGVS:: NC_000014.9:g.73825021_73825035del, NC_000014.9:g.73825022_73825035del, NC_000014.9:g.73825023_73825035del, NC_000014.9:g.73825024_73825035del, NC_000014.9:g.73825025_73825035del, NC_000014.9:g.73825026_73825035del, NC_000014.9:g.73825027_73825035del, NC_000014.9:g.73825028_73825035del, NC_000014.9:g.73825029_73825035del, NC_000014.9:g.73825030_73825035del, NC_000014.9:g.73825031_73825035del, NC_000014.9:g.73825032_73825035del, NC_000014.9:g.73825033_73825035del, NC_000014.9:g.73825034_73825035del, NC_000014.9:g.73825035del, NC_000014.9:g.73825035dup, NC_000014.9:g.73825034_73825035dup, NC_000014.9:g.73825033_73825035dup, NC_000014.9:g.73825032_73825035dup, NC_000014.9:g.73825031_73825035dup, NC_000014.9:g.73825030_73825035dup, NC_000014.9:g.73825029_73825035dup, NC_000014.9:g.73825024_73825035dup, NC_000014.9:g.73825035_73825036insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA, NC_000014.8:g.74291724_74291738del, NC_000014.8:g.74291725_74291738del, NC_000014.8:g.74291726_74291738del, NC_000014.8:g.74291727_74291738del, NC_000014.8:g.74291728_74291738del, NC_000014.8:g.74291729_74291738del, NC_000014.8:g.74291730_74291738del, NC_000014.8:g.74291731_74291738del, NC_000014.8:g.74291732_74291738del, NC_000014.8:g.74291733_74291738del, NC_000014.8:g.74291734_74291738del, NC_000014.8:g.74291735_74291738del, NC_000014.8:g.74291736_74291738del, NC_000014.8:g.74291737_74291738del, NC_000014.8:g.74291738del, NC_000014.8:g.74291738dup, NC_000014.8:g.74291737_74291738dup, NC_000014.8:g.74291736_74291738dup, NC_000014.8:g.74291735_74291738dup, NC_000014.8:g.74291734_74291738dup, NC_000014.8:g.74291733_74291738dup, NC_000014.8:g.74291732_74291738dup, NC_000014.8:g.74291727_74291738dup, NC_000014.8:g.74291738_74291739insAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Select item 14913283387.

rs1491328338 [Homo sapiens]

Variant type:: INS
Alleles:: ->C [Show Flanks]
Chromosome:: 14:73822249 (GRCh38)
14:74288953 (GRCh37)
Canonical SPDI:: NC_000014.9:73822249::C
Gene:: LINC02274 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.00101/12 (ALFA)
C=0.00614/137 (GnomAD)
HGVS:: NC_000014.9:g.73822249_73822250insC, NC_000014.8:g.74288952_74288953insC

Select item 14912943438.

rs1491294343 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->ATACATGCATATATATGCATATACATATACATATACAT [Show Flanks]
Chromosome:: 14:73828234 (GRCh38)
14:74294938 (GRCh37)
Canonical SPDI:: NC_000014.9:73828234:CATATACATATACATATACATATACATGCATATATATGCATATACATATACATATACAT:CATATACATATACATATACATATACATGCATATATATGCATATACATATACATATACATATACATGCATATATATGCATATACATATACATATACAT
Gene:: LINC02274 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000014.9:g.73828256_73828293dup, NC_000014.8:g.74294959_74294996dup

Select item 14912908269.

rs1491290826 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->TATACATATACATATA,TATATACATATACATATA,TATATACATATACATGCATATATATGCATATACATATATATATACATATACATATA,TATATATACATATACATATA [Show Flanks]
Chromosome:: 14:73828272 (GRCh38)
14:74294976 (GRCh37)
Canonical SPDI:: NC_000014.9:73828272:CATATACATATA:CATATACATATATATACATATACATATA,NC_000014.9:73828272:CATATACATATA:CATATACATATATATATACATATACATATA,NC_000014.9:73828272:CATATACATATA:CATATACATATATATATACATATACATGCATATATATGCATATACATATATATATACATATACATATA,NC_000014.9:73828272:CATATACATATA:CATATACATATATATATATACATATACATATA
Gene:: LINC02274 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CATATACATATATATATACATATACATATA=0./0 (ALFA)
HGVS:: NC_000014.9:g.73828273_73828284CATATA[2]TATACA[2]TA[2], NC_000014.9:g.73828273_73828284CATATA[2]TA[3]CATATA[2], NC_000014.9:g.73828273_73828284CATATA[2]TA[3]CATATACATGCATATATATGCATATACATATATATATACATATACATATA[1], NC_000014.9:g.73828273_73828284CATATA[2]TA[4]CATATA[2], NC_000014.8:g.74294976_74294987CATATA[2]TATACA[2]TA[2], NC_000014.8:g.74294976_74294987CATATA[2]TA[3]CATATA[2], NC_000014.8:g.74294976_74294987CATATA[2]TA[3]CATATACATGCATATATATGCATATACATATATATATACATATACATATA[1], NC_000014.8:g.74294976_74294987CATATA[2]TA[4]CATATA[2]

Select item 149128107910.

rs1491281079 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>-,TT,TTT [Show Flanks]
Chromosome:: 14:73824076 (GRCh38)
14:74290779 (GRCh37)
Canonical SPDI:: NC_000014.9:73824075:TT:T,NC_000014.9:73824075:TT:TTT,NC_000014.9:73824075:TT:TTTT
Gene:: LINC02274 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
TT=0.000009/1 (GnomAD)
HGVS:: NC_000014.9:g.73824077del, NC_000014.9:g.73824077dup, NC_000014.9:g.73824076_73824077dup, NC_000014.8:g.74290780del, NC_000014.8:g.74290780dup, NC_000014.8:g.74290779_74290780dup

Select item 149127310811.

rs1491273108 [Homo sapiens]

Variant type:: INS
Alleles:: ->C [Show Flanks]
Chromosome:: 14:73825010 (GRCh38)
14:74291714 (GRCh37)
Canonical SPDI:: NC_000014.9:73825010::C
Gene:: LINC02274 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000014.9:g.73825010_73825011insC, NC_000014.8:g.74291713_74291714insC

Select item 149127061212.

rs1491270612 [Homo sapiens]

Variant type:: DEL
Alleles:: GC>- [Show Flanks]
Chromosome:: 14:73828262 (GRCh38)
14:74294965 (GRCh37)
Canonical SPDI:: NC_000014.9:73828261:GC:
Gene:: LINC02274 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.06592/782 (ALFA)
-=0.00056/43 (GnomAD)
-=0.00067/19 (TOMMO)
HGVS:: NC_000014.9:g.73828262_73828263del, NC_000014.8:g.74294965_74294966del

Select item 149124996813.

rs1491249968 has merged into rs34270929 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTT>-,T,TT,TTT,TTTTT [Show Flanks]
Chromosome:: 14:73822258 (GRCh38)
14:74288961 (GRCh37)
Canonical SPDI:: NC_000014.9:73822248:TTTTTTTTTTTTT:TTTTTTTTT,NC_000014.9:73822248:TTTTTTTTTTTTT:TTTTTTTTTT,NC_000014.9:73822248:TTTTTTTTTTTTT:TTTTTTTTTTT,NC_000014.9:73822248:TTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000014.9:73822248:TTTTTTTTTTTTT:TTTTTTTTTTTTTT
Gene:: LINC02274 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTTTT=0./0 (ALFA)
T=0.35/14 (GENOME_DK)
T=0.4101/2054 (1000Genomes)
HGVS:: NC_000014.9:g.73822258_73822261del, NC_000014.9:g.73822259_73822261del, NC_000014.9:g.73822260_73822261del, NC_000014.9:g.73822261del, NC_000014.9:g.73822261dup, NC_000014.8:g.74288961_74288964del, NC_000014.8:g.74288962_74288964del, NC_000014.8:g.74288963_74288964del, NC_000014.8:g.74288964del, NC_000014.8:g.74288964dup

Select item 149124440214.

rs1491244402 has merged into rs11439716 [Homo sapiens]

Variant type:: DELINS
Alleles:: TTTTTTTTTTTTT>-,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTT [Show Flanks]
Chromosome:: 14:73824084 (GRCh38)
14:74290787 (GRCh37)
Canonical SPDI:: NC_000014.9:73824078:TTTTTTTTTTTTTTTTTT:TTTTT,NC_000014.9:73824078:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000014.9:73824078:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000014.9:73824078:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTT,NC_000014.9:73824078:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000014.9:73824078:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000014.9:73824078:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000014.9:73824078:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000014.9:73824078:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000014.9:73824078:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000014.9:73824078:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000014.9:73824078:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000014.9:73824078:TTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT
Gene:: LINC02274 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTT=0./0 (ALFA)
-=0.000004/1 (TOPMED)
T=0.432308/2165 (1000Genomes)
HGVS:: NC_000014.9:g.73824084_73824096del, NC_000014.9:g.73824090_73824096del, NC_000014.9:g.73824091_73824096del, NC_000014.9:g.73824092_73824096del, NC_000014.9:g.73824094_73824096del, NC_000014.9:g.73824095_73824096del, NC_000014.9:g.73824096del, NC_000014.9:g.73824096dup, NC_000014.9:g.73824095_73824096dup, NC_000014.9:g.73824094_73824096dup, NC_000014.9:g.73824093_73824096dup, NC_000014.9:g.73824092_73824096dup, NC_000014.9:g.73824091_73824096dup, NC_000014.8:g.74290787_74290799del, NC_000014.8:g.74290793_74290799del, NC_000014.8:g.74290794_74290799del, NC_000014.8:g.74290795_74290799del, NC_000014.8:g.74290797_74290799del, NC_000014.8:g.74290798_74290799del, NC_000014.8:g.74290799del, NC_000014.8:g.74290799dup, NC_000014.8:g.74290798_74290799dup, NC_000014.8:g.74290797_74290799dup, NC_000014.8:g.74290796_74290799dup, NC_000014.8:g.74290795_74290799dup, NC_000014.8:g.74290794_74290799dup

Select item 149106071115.

rs1491060711 [Homo sapiens]

Variant type:: DEL
Alleles:: CG>- [Show Flanks]
Chromosome:: 14:73827940 (GRCh38)
14:74294643 (GRCh37)
Canonical SPDI:: NC_000014.9:73827939:CG:
Gene:: LINC02274 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0.000337/4 (ALFA)
-=0.000007/1 (GnomAD)
HGVS:: NC_000014.9:g.73827940_73827941del, NC_000014.8:g.74294643_74294644del

Select item 149055947916.

rs1490559479 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 14:73829633 (GRCh38)
14:74296336 (GRCh37)
Canonical SPDI:: NC_000014.9:73829632:T:C
Gene:: LINC02274 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000014.9:g.73829633T>C, NC_000014.8:g.74296336T>C

Select item 149046900317.

rs1490469003 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 14:73822788 (GRCh38)
14:74289491 (GRCh37)
Canonical SPDI:: NC_000014.9:73822787:A:G
Gene:: LINC02274 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000014.9:g.73822788A>G, NC_000014.8:g.74289491A>G, NR_135238.1:n.945T>C

Select item 149042972018.

rs1490429720 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 14:73831192 (GRCh38)
14:74297895 (GRCh37)
Canonical SPDI:: NC_000014.9:73831191:G:A,NC_000014.9:73831191:G:C
Gene:: LINC02274 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.00004/1 (TOMMO)
A=0.00333/2 (NorthernSweden)
HGVS:: NC_000014.9:g.73831192G>A, NC_000014.9:g.73831192G>C, NC_000014.8:g.74297895G>A, NC_000014.8:g.74297895G>C

Select item 149030518719.

rs1490305187 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 14:73823338 (GRCh38)
14:74290041 (GRCh37)
Canonical SPDI:: NC_000014.9:73823337:G:C
Gene:: LINC02274 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000014.9:g.73823338G>C, NC_000014.8:g.74290041G>C, NR_135238.1:n.395C>G

Select item 148986342620.

rs1489863426 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 14:73830925 (GRCh38)
14:74297628 (GRCh37)
Canonical SPDI:: NC_000014.9:73830924:T:A
Gene:: LINC02274 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
HGVS:: NC_000014.9:g.73830925T>A, NC_000014.8:g.74297628T>A

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