SNP Links for Gene (Select 100506650) - SNP

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Links from Gene

Items: 1 to 20 of 1130

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Select item 14901014021.

rs1490101402 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 17:52986134 (GRCh38)
17:51063494 (GRCh37)
Canonical SPDI:: NC_000017.11:52986133:C:G
Gene:: LINC02876 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000021/3 (GnomAD)
G=0.00003/8 (TOPMED)
HGVS:: NC_000017.11:g.52986134C>G, NC_000017.10:g.51063494C>G

Select item 14900705932.

rs1490070593 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 17:52986842 (GRCh38)
17:51064202 (GRCh37)
Canonical SPDI:: NC_000017.11:52986841:T:A
Gene:: LINC02876 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000017.11:g.52986842T>A, NC_000017.10:g.51064202T>A

Select item 14897603833.

rs1489760383 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->G [Show Flanks]
Chromosome:: 17:52987534 (GRCh38)
17:51064895 (GRCh37)
Canonical SPDI:: NC_000017.11:52987534:G:GG
Gene:: LINC02876 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GG=0./0 (ALFA)
G=0.000011/3 (TOPMED)
G=0.000021/3 (GnomAD)
HGVS:: NC_000017.11:g.52987535dup, NC_000017.10:g.51064895dup, NM_001243552.2:c.*214dup, NR_164143.1:n.733dup, NM_001243552.1:c.*214dup

Select item 14893642514.

rs1489364251 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:52985618 (GRCh38)
17:51062978 (GRCh37)
Canonical SPDI:: NC_000017.11:52985617:G:A
Gene:: LINC02876 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.52985618G>A, NC_000017.10:g.51062978G>A, NM_001243552.2:c.-61G>A, NR_164143.1:n.114G>A, NM_001243552.1:c.-61G>A

Select item 14891196155.

rs1489119615 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:52987309 (GRCh38)
17:51064669 (GRCh37)
Canonical SPDI:: NC_000017.11:52987308:G:A
Gene:: LINC02876 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000017.11:g.52987309G>A, NC_000017.10:g.51064669G>A, NM_001243552.2:c.333G>A, NR_164143.1:n.507G>A, NM_001243552.1:c.333G>A

Select item 14890885416.

rs1489088541 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 17:52984225 (GRCh38)
17:51061585 (GRCh37)
Canonical SPDI:: NC_000017.11:52984224:T:C
Gene:: LINC02876 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.52984225T>C, NC_000017.10:g.51061585T>C

Select item 14887810197.

rs1488781019 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 17:52984739 (GRCh38)
17:51062099 (GRCh37)
Canonical SPDI:: NC_000017.11:52984738:T:C
Gene:: LINC02876 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.52984739T>C, NC_000017.10:g.51062099T>C

Select item 14875887398.

rs1487588739 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 17:52985480 (GRCh38)
17:51062840 (GRCh37)
Canonical SPDI:: NC_000017.11:52985479:A:G
Gene:: LINC02876 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000015/4 (TOPMED)
HGVS:: NC_000017.11:g.52985480A>G, NC_000017.10:g.51062840A>G

Select item 14861487899.

rs1486148789 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CTTA [Show Flanks]
Chromosome:: 17:52983520 (GRCh38)
17:51060881 (GRCh37)
Canonical SPDI:: NC_000017.11:52983520:CTTA:CTTACTTA
Gene:: LINC02876 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: CTTACTTA=0./0 (ALFA)
CTTA=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.52983521_52983524dup, NC_000017.10:g.51060881_51060884dup

Select item 148458834610.

rs1484588346 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:52987046 (GRCh38)
17:51064406 (GRCh37)
Canonical SPDI:: NC_000017.11:52987045:C:T
Gene:: LINC02876 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.52987046C>T, NC_000017.10:g.51064406C>T

Select item 148399127211.

rs1483991272 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:52986698 (GRCh38)
17:51064058 (GRCh37)
Canonical SPDI:: NC_000017.11:52986697:G:A
Gene:: LINC02876 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency
MAF:: A=0.000007/1 (GnomAD_exomes)
HGVS:: NC_000017.11:g.52986698G>A, NC_000017.10:g.51064058G>A, NM_001243552.2:c.193G>A, NR_164143.1:n.367G>A, NM_001243552.1:c.193G>A

Select item 148394208212.

rs1483942082 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:52984924 (GRCh38)
17:51062284 (GRCh37)
Canonical SPDI:: NC_000017.11:52984923:G:A
Gene:: LINC02876 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
HGVS:: NC_000017.11:g.52984924G>A, NC_000017.10:g.51062284G>A

Select item 148382766813.

rs1483827668 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 17:52987965 (GRCh38)
17:51065325 (GRCh37)
Canonical SPDI:: NC_000017.11:52987964:C:A
Gene:: LINC02876 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.01095/32 (KOREAN)
HGVS:: NC_000017.11:g.52987965C>A, NC_000017.10:g.51065325C>A

Select item 148331540014.

rs1483315400 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:52987814 (GRCh38)
17:51065174 (GRCh37)
Canonical SPDI:: NC_000017.11:52987813:C:T
Gene:: LINC02876 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000017.11:g.52987814C>T, NC_000017.10:g.51065174C>T

Select item 148324236515.

rs1483242365 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 17:52985764 (GRCh38)
17:51063124 (GRCh37)
Canonical SPDI:: NC_000017.11:52985763:T:G
Gene:: LINC02876 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.52985764T>G, NC_000017.10:g.51063124T>G

Select item 148207082416.

rs1482070824 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 17:52986688 (GRCh38)
17:51064048 (GRCh37)
Canonical SPDI:: NC_000017.11:52986687:T:C
Gene:: LINC02876 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency
MAF:: C=0.000007/1 (GnomAD_exomes)
HGVS:: NC_000017.11:g.52986688T>C, NC_000017.10:g.51064048T>C, NM_001243552.2:c.183T>C, NR_164143.1:n.357T>C, NM_001243552.1:c.183T>C

Select item 148177281217.

rs1481772812 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 17:52986558 (GRCh38)
17:51063918 (GRCh37)
Canonical SPDI:: NC_000017.11:52986557:T:G
Gene:: LINC02876 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: G=0.000007/1 (GnomAD_exomes)
HGVS:: NC_000017.11:g.52986558T>G, NC_000017.10:g.51063918T>G

Select item 148018496418.

rs1480184964 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 17:52985157 (GRCh38)
17:51062517 (GRCh37)
Canonical SPDI:: NC_000017.11:52985156:G:T
Gene:: LINC02876 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000026/7 (TOPMED)
T=0.000029/4 (GnomAD)
HGVS:: NC_000017.11:g.52985157G>T, NC_000017.10:g.51062517G>T

Select item 147987730719.

rs1479877307 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 17:52984143 (GRCh38)
17:51061503 (GRCh37)
Canonical SPDI:: NC_000017.11:52984142:C:A
Gene:: LINC02876 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000021/3 (GnomAD)
HGVS:: NC_000017.11:g.52984143C>A, NC_000017.10:g.51061503C>A

Select item 147986827820.

rs1479868278 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 17:52986201 (GRCh38)
17:51063561 (GRCh37)
Canonical SPDI:: NC_000017.11:52986200:A:G
Gene:: LINC02876 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.52986201A>G, NC_000017.10:g.51063561A>G

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