SNP Links for Gene (Select 100506655) - SNP

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Items: 1 to 20 of 2422

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Select item 14907249121.

rs1490724912 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 16:25141683 (GRCh38)
16:25153004 (GRCh37)
Canonical SPDI:: NC_000016.10:25141682:T:C
Gene:: LCMT1 (Varview), LCMT1-AS2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000016.10:g.25141683T>C, NC_000016.9:g.25153004T>C

Select item 14905885292.

rs1490588529 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:25150113 (GRCh38)
16:25161434 (GRCh37)
Canonical SPDI:: NC_000016.10:25150112:C:T
Gene:: LCMT1 (Varview), LCMT1-AS2 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000016.10:g.25150113C>T, NC_000016.9:g.25161434C>T

Select item 14904454383.

rs1490445438 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 16:25149800 (GRCh38)
16:25161121 (GRCh37)
Canonical SPDI:: NC_000016.10:25149799:C:G
Gene:: LCMT1 (Varview), LCMT1-AS2 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000016.10:g.25149800C>G, NC_000016.9:g.25161121C>G

Select item 14891013094.

rs1489101309 [Homo sapiens]

Variant type:: DELINS
Alleles:: AA>- [Show Flanks]
Chromosome:: 16:25150605 (GRCh38)
16:25161926 (GRCh37)
Canonical SPDI:: NC_000016.10:25150603:AAA:A
Gene:: LCMT1 (Varview), LCMT1-AS2 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
-=0.000008/2 (TOPMED)
HGVS:: NC_000016.10:g.25150605_25150606del, NC_000016.9:g.25161926_25161927del

Select item 14881036205.

rs1488103620 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 16:25144457 (GRCh38)
16:25155778 (GRCh37)
Canonical SPDI:: NC_000016.10:25144456:G:T
Gene:: LCMT1 (Varview), LCMT1-AS2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000016.10:g.25144457G>T, NC_000016.9:g.25155778G>T

Select item 14878708516.

rs1487870851 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 16:25145112 (GRCh38)
16:25156433 (GRCh37)
Canonical SPDI:: NC_000016.10:25145111:G:A,NC_000016.10:25145111:G:T
Gene:: LCMT1 (Varview), LCMT1-AS2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
T=0.000035/1 (TOMMO)
HGVS:: NC_000016.10:g.25145112G>A, NC_000016.10:g.25145112G>T, NC_000016.9:g.25156433G>A, NC_000016.9:g.25156433G>T

Select item 14875859807.

rs1487585980 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:25146061 (GRCh38)
16:25157382 (GRCh37)
Canonical SPDI:: NC_000016.10:25146060:G:A
Gene:: LCMT1 (Varview), LCMT1-AS2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000019/5 (TOPMED)
HGVS:: NC_000016.10:g.25146061G>A, NC_000016.9:g.25157382G>A

Select item 14875514738.

rs1487551473 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:25143925 (GRCh38)
16:25155246 (GRCh37)
Canonical SPDI:: NC_000016.10:25143924:C:T
Gene:: LCMT1 (Varview), LCMT1-AS2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.25143925C>T, NC_000016.9:g.25155246C>T

Select item 14873892829.

rs1487389282 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:25147413 (GRCh38)
16:25158734 (GRCh37)
Canonical SPDI:: NC_000016.10:25147412:G:A
Gene:: LCMT1 (Varview), LCMT1-AS2 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000021/3 (GnomAD)
A=0.00003/8 (TOPMED)
A=0.000035/1 (TOMMO)
HGVS:: NC_000016.10:g.25147413G>A, NC_000016.9:g.25158734G>A, NR_039998.1:n.1154C>T

Select item 148676655710.

rs1486766557 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 16:25149677 (GRCh38)
16:25160998 (GRCh37)
Canonical SPDI:: NC_000016.10:25149676:G:A,NC_000016.10:25149676:G:T
Gene:: LCMT1 (Varview), LCMT1-AS2 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.25149677G>A, NC_000016.10:g.25149677G>T, NC_000016.9:g.25160998G>A, NC_000016.9:g.25160998G>T

Select item 148666350711.

rs1486663507 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 16:25145318 (GRCh38)
16:25156639 (GRCh37)
Canonical SPDI:: NC_000016.10:25145317:A:G
Gene:: LCMT1 (Varview), LCMT1-AS2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.25145318A>G, NC_000016.9:g.25156639A>G

Select item 148634816912.

rs1486348169 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 16:25142071 (GRCh38)
16:25153392 (GRCh37)
Canonical SPDI:: NC_000016.10:25142070:A:C
Gene:: LCMT1 (Varview), LCMT1-AS2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000016.10:g.25142071A>C, NC_000016.9:g.25153392A>C

Select item 148578398413.

rs1485783984 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:25145491 (GRCh38)
16:25156812 (GRCh37)
Canonical SPDI:: NC_000016.10:25145490:G:A
Gene:: LCMT1 (Varview), LCMT1-AS2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000021/3 (GnomAD)
HGVS:: NC_000016.10:g.25145491G>A, NC_000016.9:g.25156812G>A

Select item 148563070114.

rs1485630701 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:25146902 (GRCh38)
16:25158223 (GRCh37)
Canonical SPDI:: NC_000016.10:25146901:C:T
Gene:: LCMT1 (Varview), LCMT1-AS2 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.25146902C>T, NC_000016.9:g.25158223C>T, NR_039998.1:n.1665G>A

Select item 148525999215.

rs1485259992 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 16:25149260 (GRCh38)
16:25160581 (GRCh37)
Canonical SPDI:: NC_000016.10:25149259:T:C
Gene:: LCMT1 (Varview), LCMT1-AS2 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000214/3 (ALFA)
C=0.000011/3 (TOPMED)
C=0.000021/3 (GnomAD)
HGVS:: NC_000016.10:g.25149260T>C, NC_000016.9:g.25160581T>C

Select item 148507035416.

rs1485070354 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 16:25146921 (GRCh38)
16:25158242 (GRCh37)
Canonical SPDI:: NC_000016.10:25146920:T:C
Gene:: LCMT1 (Varview), LCMT1-AS2 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
HGVS:: NC_000016.10:g.25146921T>C, NC_000016.9:g.25158242T>C, NR_039998.1:n.1646A>G

Select item 148490568817.

rs1484905688 [Homo sapiens]

Variant type:: DELINS
Alleles:: AGAG>- [Show Flanks]
Chromosome:: 16:25142080 (GRCh38)
16:25153401 (GRCh37)
Canonical SPDI:: NC_000016.10:25142077:AGAGAG:AG
Gene:: LCMT1 (Varview), LCMT1-AS2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AG=0./0 (ALFA)
-=0.000008/2 (TOPMED)
HGVS:: NC_000016.10:g.25142078AG[1], NC_000016.9:g.25153399AG[1]

Select item 148413654618.

rs1484136546 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 16:25140249 (GRCh38)
16:25151570 (GRCh37)
Canonical SPDI:: NC_000016.10:25140248:T:G
Gene:: LCMT1 (Varview), LCMT1-AS2 (Varview)
Functional Consequence:: downstream_transcript_variant,splice_donor_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.25140249T>G, NC_000016.9:g.25151570T>G

Select item 148393610519.

rs1483936105 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 16:25140614 (GRCh38)
16:25151935 (GRCh37)
Canonical SPDI:: NC_000016.10:25140613:T:C
Gene:: LCMT1 (Varview), LCMT1-AS2 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000016.10:g.25140614T>C, NC_000016.9:g.25151935T>C, NR_039998.1:n.2564A>G

Select item 148356867220.

rs1483568672 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 16:25148621 (GRCh38)
16:25159942 (GRCh37)
Canonical SPDI:: NC_000016.10:25148620:A:C
Gene:: LCMT1 (Varview), LCMT1-AS2 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000015/4 (TOPMED)
HGVS:: NC_000016.10:g.25148621A>C, NC_000016.9:g.25159942A>C

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