SNP Links for Gene (Select 100506733) - SNP

Links from Gene

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Select item 14914681651.

rs1491468165 [Homo sapiens]

Variant type:: DEL
Alleles:: AT>- [Show Flanks]
Chromosome:: 10:49148830 (GRCh38)
10:50356875 (GRCh37)
Canonical SPDI:: NC_000010.11:49148829:AT:
Gene:: FAM170B-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0.00008/1 (ALFA)
HGVS:: NC_000010.11:g.49148830_49148831del, NC_000010.10:g.50356875_50356876del

Select item 14913028662.

rs1491302866 has merged into rs111650567 [Homo sapiens]

Variant type:: DELINS
Alleles:: AA>-,A,AAA,AAAA [Show Flanks]
Chromosome:: 10:49132856 (GRCh38)
10:50340901 (GRCh37)
Canonical SPDI:: NC_000010.11:49132845:AAAAAAAAAAAA:AAAAAAAAAA,NC_000010.11:49132845:AAAAAAAAAAAA:AAAAAAAAAAA,NC_000010.11:49132845:AAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000010.11:49132845:AAAAAAAAAAAA:AAAAAAAAAAAAAA
Gene:: FAM170B (Varview), FAM170B-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAAA=0.000144/1 (ALFA)
-=0.463259/2320 (1000Genomes)
A=0.469525/1741 (TWINSUK)
A=0.48054/1852 (ALSPAC)
-=0.486093/128664 (TOPMED)
A=0.5/20 (GENOME_DK)
HGVS:: NC_000010.11:g.49132856_49132857del, NC_000010.11:g.49132857del, NC_000010.11:g.49132857dup, NC_000010.11:g.49132856_49132857dup, NC_000010.10:g.50340901_50340902del, NC_000010.10:g.50340902del, NC_000010.10:g.50340902dup, NC_000010.10:g.50340901_50340902dup

Select item 14911771063.

rs1491177106 [Homo sapiens]

Variant type:: SNV:
Alleles:: ->G
Chromosome:: no mapping
Canonical SPDI:

Select item 14907668564.

rs1490766856 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:49151555 (GRCh38)
10:50359600 (GRCh37)
Canonical SPDI:: NC_000010.11:49151554:A:G
Gene:: FAM170B-AS1 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000010.11:g.49151555A>G, NC_000010.10:g.50359600A>G

Select item 14905878515.

rs1490587851 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:49129833 (GRCh38)
10:50337878 (GRCh37)
Canonical SPDI:: NC_000010.11:49129832:T:C
Gene:: FAM170B-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.49129833T>C, NC_000010.10:g.50337878T>C

Select item 14905003136.

rs1490500313 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>- [Show Flanks]
Chromosome:: 10:49125596 (GRCh38)
10:50333641 (GRCh37)
Canonical SPDI:: NC_000010.11:49125595:TTT:TT
Gene:: FAM170B-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: TT=0./0 (ALFA)
-=0.000026/7 (TOPMED)
HGVS:: NC_000010.11:g.49125598del, NC_000010.10:g.50333643del

Select item 14904260517.

rs1490426051 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:49138979 (GRCh38)
10:50347024 (GRCh37)
Canonical SPDI:: NC_000010.11:49138978:G:A
Gene:: FAM170B-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000011/3 (TOPMED)
HGVS:: NC_000010.11:g.49138979G>A, NC_000010.10:g.50347024G>A

Select item 14904250928.

rs1490425092 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:49150956 (GRCh38)
10:50359001 (GRCh37)
Canonical SPDI:: NC_000010.11:49150955:A:G
Gene:: FAM170B-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.49150956A>G, NC_000010.10:g.50359001A>G, NR_038973.1:n.1409A>G

Select item 14904103189.

rs1490410318 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:49138223 (GRCh38)
10:50346268 (GRCh37)
Canonical SPDI:: NC_000010.11:49138222:G:A
Gene:: FAM170B-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000010.11:g.49138223G>A, NC_000010.10:g.50346268G>A

Select item 149021840310.

rs1490218403 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:49126538 (GRCh38)
10:50334583 (GRCh37)
Canonical SPDI:: NC_000010.11:49126537:G:A
Gene:: FAM170B-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000019/5 (TOPMED)
HGVS:: NC_000010.11:g.49126538G>A, NC_000010.10:g.50334583G>A

Select item 149015517911.

rs1490155179 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 10:49132625 (GRCh38)
10:50340670 (GRCh37)
Canonical SPDI:: NC_000010.11:49132624:A:C
Gene:: FAM170B (Varview), FAM170B-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000010.11:g.49132625A>C, NC_000010.10:g.50340670A>C

Select item 149006110112.

rs1490061101 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 10:49146114 (GRCh38)
10:50354159 (GRCh37)
Canonical SPDI:: NC_000010.11:49146113:C:A
Gene:: FAM170B-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
HGVS:: NC_000010.11:g.49146114C>A, NC_000010.10:g.50354159C>A

Select item 149000431513.

rs1490004315 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:49145630 (GRCh38)
10:50353675 (GRCh37)
Canonical SPDI:: NC_000010.11:49145629:C:T
Gene:: FAM170B-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000010.11:g.49145630C>T, NC_000010.10:g.50353675C>T

Select item 148999219014.

rs1489992190 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:49133037 (GRCh38)
10:50341082 (GRCh37)
Canonical SPDI:: NC_000010.11:49133036:G:A
Gene:: FAM170B (Varview), FAM170B-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.49133037G>A, NC_000010.10:g.50341082G>A

Select item 148989716015.

rs1489897160 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:49146556 (GRCh38)
10:50354601 (GRCh37)
Canonical SPDI:: NC_000010.11:49146555:T:C
Gene:: FAM170B-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000026/7 (TOPMED)
C=0.00005/7 (GnomAD)
HGVS:: NC_000010.11:g.49146556T>C, NC_000010.10:g.50354601T>C

Select item 148977821316.

rs1489778213 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 10:49139240 (GRCh38)
10:50347285 (GRCh37)
Canonical SPDI:: NC_000010.11:49139239:G:T
Gene:: FAM170B-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.49139240G>T, NC_000010.10:g.50347285G>T

Select item 148969800617.

rs1489698006 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 10:49127331 (GRCh38)
10:50335376 (GRCh37)
Canonical SPDI:: NC_000010.11:49127330:G:T
Gene:: FAM170B-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000010.11:g.49127331G>T, NC_000010.10:g.50335376G>T

Select item 148961181918.

rs1489611819 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:49139705 (GRCh38)
10:50347750 (GRCh37)
Canonical SPDI:: NC_000010.11:49139704:G:A
Gene:: FAM170B-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000015/4 (TOPMED)
HGVS:: NC_000010.11:g.49139705G>A, NC_000010.10:g.50347750G>A

Select item 148956348619.

rs1489563486 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 10:49146603 (GRCh38)
10:50354648 (GRCh37)
Canonical SPDI:: NC_000010.11:49146602:G:T
Gene:: FAM170B-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000015/4 (TOPMED)
HGVS:: NC_000010.11:g.49146603G>T, NC_000010.10:g.50354648G>T

Select item 148953410920.

rs1489534109 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 10:49145722 (GRCh38)
10:50353767 (GRCh37)
Canonical SPDI:: NC_000010.11:49145721:C:G
Gene:: FAM170B-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000015/4 (TOPMED)
HGVS:: NC_000010.11:g.49145722C>G, NC_000010.10:g.50353767C>G

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