SNP Links for Gene (Select 100506737) - SNP

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Select item 14911345651.

rs1491134565 has merged into rs61363384 [Homo sapiens]

Variant type:: DELINS
Alleles:: ACACACACAC>-,ACAC,ACACAC,ACACACAC,ACACACACACAC,ACACACACACACAC,ACACACACACACACAC [Show Flanks]
Chromosome:: 22:45604931 (GRCh38)
22:46000811 (GRCh37)
Canonical SPDI:: NC_000022.11:45604919:CACACACACACACACACACAC:CACACACACAC,NC_000022.11:45604919:CACACACACACACACACACAC:CACACACACACACAC,NC_000022.11:45604919:CACACACACACACACACACAC:CACACACACACACACAC,NC_000022.11:45604919:CACACACACACACACACACAC:CACACACACACACACACAC,NC_000022.11:45604919:CACACACACACACACACACAC:CACACACACACACACACACACAC,NC_000022.11:45604919:CACACACACACACACACACAC:CACACACACACACACACACACACAC,NC_000022.11:45604919:CACACACACACACACACACAC:CACACACACACACACACACACACACAC
Gene:: LINC01589 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CACACACACACACAC=0./0 (ALFA)
CA=0.05252/263 (1000Genomes)
HGVS:: NC_000022.11:g.45604921AC[5], NC_000022.11:g.45604921AC[7], NC_000022.11:g.45604921AC[8], NC_000022.11:g.45604921AC[9], NC_000022.11:g.45604921AC[11], NC_000022.11:g.45604921AC[12], NC_000022.11:g.45604921AC[13], NC_000022.10:g.46000801AC[5], NC_000022.10:g.46000801AC[7], NC_000022.10:g.46000801AC[8], NC_000022.10:g.46000801AC[9], NC_000022.10:g.46000801AC[11], NC_000022.10:g.46000801AC[12], NC_000022.10:g.46000801AC[13]

Select item 14908116142.

rs1490811614 [Homo sapiens]

Variant type:: DELINS
Alleles:: GGTTCACTCATTCATT>- [Show Flanks]
Chromosome:: 22:45606461 (GRCh38)
22:46002341 (GRCh37)
Canonical SPDI:: NC_000022.11:45606451:TCATTCATTGGTTCACTCATTCATT:TCATTCATT
Gene:: LINC01589 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TCATTCATT=0./0 (ALFA)
-=0.000007/1 (GnomAD)
-=0.000011/3 (TOPMED)
HGVS:: NC_000022.11:g.45606461_45606476del, NC_000022.10:g.46002341_46002356del

Select item 14907604203.

rs1490760420 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 22:45605742 (GRCh38)
22:46001622 (GRCh37)
Canonical SPDI:: NC_000022.11:45605741:C:G,NC_000022.11:45605741:C:T
Gene:: LINC01589 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000022.11:g.45605742C>G, NC_000022.11:g.45605742C>T, NC_000022.10:g.46001622C>G, NC_000022.10:g.46001622C>T

Select item 14906488894.

rs1490648889 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:45606092 (GRCh38)
22:46001972 (GRCh37)
Canonical SPDI:: NC_000022.11:45606091:C:T
Gene:: LINC01589 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.45606092C>T, NC_000022.10:g.46001972C>T

Select item 14889213335.

rs1488921333 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 22:45605094 (GRCh38)
22:46000974 (GRCh37)
Canonical SPDI:: NC_000022.11:45605093:G:A
Gene:: LINC01589 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000069/1 (ALFA)
A=0.000015/4 (TOPMED)
A=0.000029/4 (GnomAD)
HGVS:: NC_000022.11:g.45605094G>A, NC_000022.10:g.46000974G>A

Select item 14888238206.

rs1488823820 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:45606985 (GRCh38)
22:46002865 (GRCh37)
Canonical SPDI:: NC_000022.11:45606984:C:T
Gene:: LINC01589 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.45606985C>T, NC_000022.10:g.46002865C>T

Select item 14882316787.

rs1488231678 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 22:45606891 (GRCh38)
22:46002771 (GRCh37)
Canonical SPDI:: NC_000022.11:45606890:G:A
Gene:: LINC01589 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000011/3 (TOPMED)
A=0.000156/1 (1000Genomes)
HGVS:: NC_000022.11:g.45606891G>A, NC_000022.10:g.46002771G>A

Select item 14875275738.

rs1487527573 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 22:45604746 (GRCh38)
22:46000626 (GRCh37)
Canonical SPDI:: NC_000022.11:45604745:T:A
Gene:: LINC01589 (Varview)
Functional Consequence:: non_coding_transcript_variant
HGVS:: NC_000022.11:g.45604746T>A, NC_000022.10:g.46000626T>A, NR_131244.1:n.260A>T

Select item 14874209659.

rs1487420965 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 22:45605850 (GRCh38)
22:46001730 (GRCh37)
Canonical SPDI:: NC_000022.11:45605849:G:A
Gene:: LINC01589 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000022.11:g.45605850G>A, NC_000022.10:g.46001730G>A

Select item 148469820010.

rs1484698200 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 22:45605186 (GRCh38)
22:46001066 (GRCh37)
Canonical SPDI:: NC_000022.11:45605185:G:A
Gene:: LINC01589 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000022.11:g.45605186G>A, NC_000022.10:g.46001066G>A

Select item 148323631211.

rs1483236312 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 22:45605872 (GRCh38)
22:46001752 (GRCh37)
Canonical SPDI:: NC_000022.11:45605871:G:A,NC_000022.11:45605871:G:C,NC_000022.11:45605871:G:T
Gene:: LINC01589 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.00005/1 (ALFA)
T=0.00006/1 (TOMMO)
C=0.00022/1 (Estonian)
G=0.5/1 (SGDP_PRJ)
HGVS:: NC_000022.11:g.45605872G>A, NC_000022.11:g.45605872G>C, NC_000022.11:g.45605872G>T, NC_000022.10:g.46001752G>A, NC_000022.10:g.46001752G>C, NC_000022.10:g.46001752G>T

Select item 148155508912.

rs1481555089 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 22:45605823 (GRCh38)
22:46001703 (GRCh37)
Canonical SPDI:: NC_000022.11:45605822:G:A,NC_000022.11:45605822:G:T
Gene:: LINC01589 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.00004/1 (TOMMO)
HGVS:: NC_000022.11:g.45605823G>A, NC_000022.11:g.45605823G>T, NC_000022.10:g.46001703G>A, NC_000022.10:g.46001703G>T

Select item 148132953913.

rs1481329539 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:45606536 (GRCh38)
22:46002416 (GRCh37)
Canonical SPDI:: NC_000022.11:45606535:C:T
Gene:: LINC01589 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000022.11:g.45606536C>T, NC_000022.10:g.46002416C>T

Select item 148090762614.

rs1480907626 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 22:45604920 (GRCh38)
22:46000800 (GRCh37)
Canonical SPDI:: NC_000022.11:45604919:C:A,NC_000022.11:45604919:C:T
Gene:: LINC01589 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
A=0.000142/2 (TOMMO)
A=0.002396/7 (KOREAN)
C=0.5/1 (SGDP_PRJ)
HGVS:: NC_000022.11:g.45604920C>A, NC_000022.11:g.45604920C>T, NC_000022.10:g.46000800C>A, NC_000022.10:g.46000800C>T

Select item 147994508815.

rs1479945088 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 22:45605927 (GRCh38)
22:46001807 (GRCh37)
Canonical SPDI:: NC_000022.11:45605926:A:G
Gene:: LINC01589 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency
MAF:: G=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.45605927A>G, NC_000022.10:g.46001807A>G

Select item 147992113416.

rs1479921134 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 22:45605369 (GRCh38)
22:46001249 (GRCh37)
Canonical SPDI:: NC_000022.11:45605368:A:T
Gene:: LINC01589 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000022.11:g.45605369A>T, NC_000022.10:g.46001249A>T

Select item 147958298317.

rs1479582983 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 22:45604976 (GRCh38)
22:46000856 (GRCh37)
Canonical SPDI:: NC_000022.11:45604975:T:C
Gene:: LINC01589 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000014/2 (GnomAD)
C=0.000015/4 (TOPMED)
HGVS:: NC_000022.11:g.45604976T>C, NC_000022.10:g.46000856T>C

Select item 147903698918.

rs1479036989 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 22:45603973 (GRCh38)
22:45999853 (GRCh37)
Canonical SPDI:: NC_000022.11:45603972:C:G
Gene:: LINC01589 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000022.11:g.45603973C>G, NC_000022.10:g.45999853C>G

Select item 147826050419.

rs1478260504 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 22:45606522 (GRCh38)
22:46002402 (GRCh37)
Canonical SPDI:: NC_000022.11:45606521:C:T
Gene:: LINC01589 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000022.11:g.45606522C>T, NC_000022.10:g.46002402C>T

Select item 147803421820.

rs1478034218 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 22:45607437 (GRCh38)
22:46003317 (GRCh37)
Canonical SPDI:: NC_000022.11:45607436:G:T
Gene:: LINC01589 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000022.11:g.45607437G>T, NC_000022.10:g.46003317G>T

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