SNP Links for Gene (Select 100506769) - SNP

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Select item 14910641991.

rs1491064199 has merged into rs60669434 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAA>-,A,AA,AAA,AAAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 10:49300471 (GRCh38)
10:50508516 (GRCh37)
Canonical SPDI:: NC_000010.11:49300461:AAAAAAAAAAAAAAAAAAA:AAAAAAAAA,NC_000010.11:49300461:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAA,NC_000010.11:49300461:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAA,NC_000010.11:49300461:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000010.11:49300461:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000010.11:49300461:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000010.11:49300461:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000010.11:49300461:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000010.11:49300461:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000010.11:49300461:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000010.11:49300461:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000010.11:49300461:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000010.11:49300461:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:49300461:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:49300461:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:49300461:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:49300461:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: C10orf71 (Varview), C10orf71-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAA=0./0 (ALFA)
-=0.2496/1250 (1000Genomes)
HGVS:: NC_000010.11:g.49300471_49300480del, NC_000010.11:g.49300472_49300480del, NC_000010.11:g.49300473_49300480del, NC_000010.11:g.49300474_49300480del, NC_000010.11:g.49300475_49300480del, NC_000010.11:g.49300476_49300480del, NC_000010.11:g.49300477_49300480del, NC_000010.11:g.49300478_49300480del, NC_000010.11:g.49300479_49300480del, NC_000010.11:g.49300480del, NC_000010.11:g.49300480dup, NC_000010.11:g.49300479_49300480dup, NC_000010.11:g.49300478_49300480dup, NC_000010.11:g.49300477_49300480dup, NC_000010.11:g.49300476_49300480dup, NC_000010.11:g.49300475_49300480dup, NC_000010.11:g.49300474_49300480dup, NC_000010.10:g.50508516_50508525del, NC_000010.10:g.50508517_50508525del, NC_000010.10:g.50508518_50508525del, NC_000010.10:g.50508519_50508525del, NC_000010.10:g.50508520_50508525del, NC_000010.10:g.50508521_50508525del, NC_000010.10:g.50508522_50508525del, NC_000010.10:g.50508523_50508525del, NC_000010.10:g.50508524_50508525del, NC_000010.10:g.50508525del, NC_000010.10:g.50508525dup, NC_000010.10:g.50508524_50508525dup, NC_000010.10:g.50508523_50508525dup, NC_000010.10:g.50508522_50508525dup, NC_000010.10:g.50508521_50508525dup, NC_000010.10:g.50508520_50508525dup, NC_000010.10:g.50508519_50508525dup

Select item 14906425102.

rs1490642510 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:49299495 (GRCh38)
10:50507540 (GRCh37)
Canonical SPDI:: NC_000010.11:49299494:G:A
Gene:: C10orf71 (Varview), C10orf71-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000094/1 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.49299495G>A, NC_000010.10:g.50507540G>A

Select item 14903200853.

rs1490320085 [Homo sapiens]

Variant type:: DELINS
Alleles:: GAA>- [Show Flanks]
Chromosome:: 10:49296089 (GRCh38)
10:50504134 (GRCh37)
Canonical SPDI:: NC_000010.11:49296085:GAAGAA:GAA
Gene:: C10orf71 (Varview), C10orf71-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,500B_downstream_variant,downstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: GAAGAA=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.49296086GAA[1], NC_000010.10:g.50504131GAA[1]

Select item 14898576424.

rs1489857642 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 10:49295857 (GRCh38)
10:50503902 (GRCh37)
Canonical SPDI:: NC_000010.11:49295856:T:G
Gene:: C10orf71 (Varview), C10orf71-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,500B_downstream_variant,downstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.49295857T>G, NC_000010.10:g.50503902T>G

Select item 14894896775.

rs1489489677 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:49300628 (GRCh38)
10:50508673 (GRCh37)
Canonical SPDI:: NC_000010.11:49300627:T:C
Gene:: C10orf71 (Varview), C10orf71-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000010.11:g.49300628T>C, NC_000010.10:g.50508673T>C

Select item 14893865006.

rs1489386500 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 10:49300222 (GRCh38)
10:50508267 (GRCh37)
Canonical SPDI:: NC_000010.11:49300221:T:A
Gene:: C10orf71 (Varview), C10orf71-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.49300222T>A, NC_000010.10:g.50508267T>A

Select item 14883180817.

rs1488318081 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:49298193 (GRCh38)
10:50506238 (GRCh37)
Canonical SPDI:: NC_000010.11:49298192:A:G
Gene:: C10orf71 (Varview), C10orf71-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.49298193A>G, NC_000010.10:g.50506238A>G

Select item 14879225988.

rs1487922598 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:49298148 (GRCh38)
10:50506193 (GRCh37)
Canonical SPDI:: NC_000010.11:49298147:G:A
Gene:: C10orf71 (Varview), C10orf71-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000011/3 (TOPMED)
HGVS:: NC_000010.11:g.49298148G>A, NC_000010.10:g.50506193G>A

Select item 14874389699.

rs1487438969 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 10:49298438 (GRCh38)
10:50506483 (GRCh37)
Canonical SPDI:: NC_000010.11:49298437:T:A,NC_000010.11:49298437:T:C
Gene:: C10orf71 (Varview), C10orf71-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.49298438T>A, NC_000010.11:g.49298438T>C, NC_000010.10:g.50506483T>A, NC_000010.10:g.50506483T>C

Select item 148691164410.

rs1486911644 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:49297987 (GRCh38)
10:50506032 (GRCh37)
Canonical SPDI:: NC_000010.11:49297986:T:C
Gene:: C10orf71 (Varview), C10orf71-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000011/3 (TOPMED)
C=0.000029/4 (GnomAD)
HGVS:: NC_000010.11:g.49297987T>C, NC_000010.10:g.50506032T>C

Select item 148544224411.

rs1485442244 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:49295828 (GRCh38)
10:50503873 (GRCh37)
Canonical SPDI:: NC_000010.11:49295827:A:G
Gene:: C10orf71 (Varview), C10orf71-AS1 (Varview)
Functional Consequence:: downstream_transcript_variant,upstream_transcript_variant,500B_downstream_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000010.11:g.49295828A>G, NC_000010.10:g.50503873A>G

Select item 148510138912.

rs1485101389 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:49300341 (GRCh38)
10:50508386 (GRCh37)
Canonical SPDI:: NC_000010.11:49300340:T:C
Gene:: C10orf71 (Varview), C10orf71-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000015/4 (TOPMED)
C=0.000342/1 (KOREAN)
HGVS:: NC_000010.11:g.49300341T>C, NC_000010.10:g.50508386T>C

Select item 148397703413.

rs1483977034 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:49296523 (GRCh38)
10:50504568 (GRCh37)
Canonical SPDI:: NC_000010.11:49296522:G:A
Gene:: C10orf71 (Varview), C10orf71-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000015/4 (TOPMED)
HGVS:: NC_000010.11:g.49296523G>A, NC_000010.10:g.50504568G>A, NR_108038.1:n.455C>T

Select item 148396600414.

rs1483966004 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:49295904 (GRCh38)
10:50503949 (GRCh37)
Canonical SPDI:: NC_000010.11:49295903:G:A
Gene:: C10orf71 (Varview), C10orf71-AS1 (Varview)
Functional Consequence:: downstream_transcript_variant,upstream_transcript_variant,500B_downstream_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.49295904G>A, NC_000010.10:g.50503949G>A

Select item 148288656715.

rs1482886567 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:49297335 (GRCh38)
10:50505380 (GRCh37)
Canonical SPDI:: NC_000010.11:49297334:A:G
Gene:: C10orf71 (Varview), C10orf71-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.49297335A>G, NC_000010.10:g.50505380A>G

Select item 148246629616.

rs1482466296 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 10:49298944 (GRCh38)
10:50506989 (GRCh37)
Canonical SPDI:: NC_000010.11:49298943:T:A
Gene:: C10orf71 (Varview), C10orf71-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0./0 (GnomAD)
HGVS:: NC_000010.11:g.49298944T>A, NC_000010.10:g.50506989T>A

Select item 148193444217.

rs1481934442 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 10:49298509 (GRCh38)
10:50506554 (GRCh37)
Canonical SPDI:: NC_000010.11:49298508:C:A
Gene:: C10orf71 (Varview), C10orf71-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.49298509C>A, NC_000010.10:g.50506554C>A

Select item 148042834718.

rs1480428347 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:49296154 (GRCh38)
10:50504199 (GRCh37)
Canonical SPDI:: NC_000010.11:49296153:C:T
Gene:: C10orf71 (Varview), C10orf71-AS1 (Varview)
Functional Consequence:: downstream_transcript_variant,upstream_transcript_variant,500B_downstream_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000010.11:g.49296154C>T, NC_000010.10:g.50504199C>T

Select item 147938480119.

rs1479384801 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 10:49300446 (GRCh38)
10:50508491 (GRCh37)
Canonical SPDI:: NC_000010.11:49300445:T:A
Gene:: C10orf71 (Varview), C10orf71-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0.000084/1 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.49300446T>A, NC_000010.10:g.50508491T>A

Select item 147825365020.

rs1478253650 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 10:49296732 (GRCh38)
10:50504777 (GRCh37)
Canonical SPDI:: NC_000010.11:49296731:G:A,NC_000010.11:49296731:G:C
Gene:: C10orf71 (Varview), C10orf71-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.49296732G>A, NC_000010.11:g.49296732G>C, NC_000010.10:g.50504777G>A, NC_000010.10:g.50504777G>C, NR_108038.1:n.246C>T, NR_108038.1:n.246C>G

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