SNP Links for Gene (Select 100506776) - SNP

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Select item 14915359061.

rs1491535906 [Homo sapiens]

Variant type:: SNV:
Alleles:: ->AA
Chromosome:: no mapping
Canonical SPDI:

Select item 14913889182.

rs1491388918 has merged into rs60040858 [Homo sapiens]

Variant type:: DELINS
Alleles:: GGG>-,GG,GGGG,GGGGG [Show Flanks]
Chromosome:: 7:38346152 (GRCh38)
7:38385753 (GRCh37)
Canonical SPDI:: NC_000007.14:38346146:GGGGGGGG:GGGGG,NC_000007.14:38346146:GGGGGGGG:GGGGGGG,NC_000007.14:38346146:GGGGGGGG:GGGGGGGGG,NC_000007.14:38346146:GGGGGGGG:GGGGGGGGGG
Gene:: TRG-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGGGGGGGGG=0./0 (ALFA)
-=0.10756/491 (1000Genomes)
G=0.12518/518 (Estonian)
HGVS:: NC_000007.14:g.38346152_38346154del, NC_000007.14:g.38346154del, NC_000007.14:g.38346154dup, NC_000007.14:g.38346153_38346154dup, NC_000007.13:g.38385753_38385755del, NC_000007.13:g.38385755del, NC_000007.13:g.38385755dup, NC_000007.13:g.38385754_38385755dup, NG_001336.2:g.27799_27801del, NG_001336.2:g.27801del, NG_001336.2:g.27801dup, NG_001336.2:g.27800_27801dup

Select item 14913581353.

rs1491358135 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GA [Show Flanks]
Chromosome:: 7:38353148 (GRCh38)
7:38392750 (GRCh37)
Canonical SPDI:: NC_000007.14:38353148:A:AGA
Gene:: TRG-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AGA=0./0 (ALFA)
AG=0.000053/6 (GnomAD)
HGVS:: NC_000007.14:g.38353149_38353150insGA, NC_000007.13:g.38392750_38392751insGA, NG_001336.2:g.20799_20800insCT

Select item 14913576154.

rs1491357615 has merged into rs1554325437 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->C [Show Flanks]
Chromosome:: 7:38376786 (GRCh38)
7:38416388 (GRCh37)
Canonical SPDI:: NC_000007.14:38376786:C:CC
Gene:: TRG-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CC=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.005663/21 (TWINSUK)
C=0.005708/22 (ALSPAC)
HGVS:: NC_000007.14:g.38376787dup, NC_000007.13:g.38416388dup, NR_040085.1:n.1666dup

Select item 14911847075.

rs1491184707 has merged into rs1344493803 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAA>-,A,AA,AAAAA [Show Flanks]
Chromosome:: 7:38353151 (GRCh38)
7:38392752 (GRCh37)
Canonical SPDI:: NC_000007.14:38353147:AAAAAAA:AAA,NC_000007.14:38353147:AAAAAAA:AAAA,NC_000007.14:38353147:AAAAAAA:AAAAA,NC_000007.14:38353147:AAAAAAA:AAAAAAAA
Gene:: TRG-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAA=0./0 (ALFA)
-=0.000008/2 (TOPMED)
A=0.000009/1 (GnomAD)
-=0.000039/1 (TOMMO)
HGVS:: NC_000007.14:g.38353151_38353154del, NC_000007.14:g.38353152_38353154del, NC_000007.14:g.38353153_38353154del, NC_000007.14:g.38353154dup, NC_000007.13:g.38392752_38392755del, NC_000007.13:g.38392753_38392755del, NC_000007.13:g.38392754_38392755del, NC_000007.13:g.38392755dup, NG_001336.2:g.20797_20800del, NG_001336.2:g.20798_20800del, NG_001336.2:g.20799_20800del, NG_001336.2:g.20800dup

Select item 14909737236.

rs1490973723 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:38357135 (GRCh38)
7:38396736 (GRCh37)
Canonical SPDI:: NC_000007.14:38357134:A:G
Gene:: TRG-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000008/1 (GnomAD)
HGVS:: NC_000007.14:g.38357135A>G, NC_000007.13:g.38396736A>G, NG_001336.2:g.16813T>C

Select item 14908941357.

rs1490894135 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:38346213 (GRCh38)
7:38385814 (GRCh37)
Canonical SPDI:: NC_000007.14:38346212:A:G
Gene:: TRG-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.00005/7 (GnomAD)
G=0.000121/32 (TOPMED)
HGVS:: NC_000007.14:g.38346213A>G, NC_000007.13:g.38385814A>G, NG_001336.2:g.27735T>C

Select item 14908794148.

rs1490879414 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 7:38347270 (GRCh38)
7:38386871 (GRCh37)
Canonical SPDI:: NC_000007.14:38347269:G:A,NC_000007.14:38347269:G:T
Gene:: TRG-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000007.14:g.38347270G>A, NC_000007.14:g.38347270G>T, NC_000007.13:g.38386871G>A, NC_000007.13:g.38386871G>T, NG_001336.2:g.26678C>T, NG_001336.2:g.26678C>A

Select item 14908290079.

rs1490829007 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 7:38345891 (GRCh38)
7:38385492 (GRCh37)
Canonical SPDI:: NC_000007.14:38345890:G:A,NC_000007.14:38345890:G:C
Gene:: TRG-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000008/1 (GnomAD)
C=0.000034/9 (TOPMED)
HGVS:: NC_000007.14:g.38345891G>A, NC_000007.14:g.38345891G>C, NC_000007.13:g.38385492G>A, NC_000007.13:g.38385492G>C, NG_001336.2:g.28057C>T, NG_001336.2:g.28057C>G

Select item 149076789310.

rs1490767893 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 7:38351318 (GRCh38)
7:38390919 (GRCh37)
Canonical SPDI:: NC_000007.14:38351317:A:T
Gene:: TRG-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000008/1 (GnomAD)
HGVS:: NC_000007.14:g.38351318A>T, NC_000007.13:g.38390919A>T, NG_001336.2:g.22630T>A

Select item 149071924611.

rs1490719246 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 7:38341156 (GRCh38)
7:38380757 (GRCh37)
Canonical SPDI:: NC_000007.14:38341155:C:A,NC_000007.14:38341155:C:T
Gene:: TRG-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000019/5 (TOPMED)
HGVS:: NC_000007.14:g.38341156C>A, NC_000007.14:g.38341156C>T, NC_000007.13:g.38380757C>A, NC_000007.13:g.38380757C>T, NG_001336.2:g.32792G>T, NG_001336.2:g.32792G>A

Select item 149066353712.

rs1490663537 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->GA [Show Flanks]
Chromosome:: 7:38346505 (GRCh38)
7:38386107 (GRCh37)
Canonical SPDI:: NC_000007.14:38346505:AGAGA:AGAGAGA
Gene:: TRG-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: AG=0.000007/1 (GnomAD)
HGVS:: NC_000007.14:g.38346507GA[3], NC_000007.13:g.38386108GA[3], NG_001336.2:g.27439CT[3]

Select item 149066013313.

rs1490660133 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 7:38350221 (GRCh38)
7:38389822 (GRCh37)
Canonical SPDI:: NC_000007.14:38350220:C:T
Gene:: TRG-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000008/1 (GnomAD)
HGVS:: NC_000007.14:g.38350221C>T, NC_000007.13:g.38389822C>T, NG_001336.2:g.23727G>A

Select item 149061664414.

rs1490616644 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 7:38361207 (GRCh38)
7:38400808 (GRCh37)
Canonical SPDI:: NC_000007.14:38361206:T:C
Gene:: TRG-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000071/1 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000035/1 (TOMMO)
HGVS:: NC_000007.14:g.38361207T>C, NC_000007.13:g.38400808T>C, NG_001336.2:g.12741A>G

Select item 149060315915.

rs1490603159 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 7:38350942 (GRCh38)
7:38390543 (GRCh37)
Canonical SPDI:: NC_000007.14:38350941:G:C
Gene:: TRG-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000008/1 (GnomAD)
HGVS:: NC_000007.14:g.38350942G>C, NC_000007.13:g.38390543G>C, NG_001336.2:g.23006C>G

Select item 149052967416.

rs1490529674 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 7:38353702 (GRCh38)
7:38393303 (GRCh37)
Canonical SPDI:: NC_000007.14:38353701:C:A,NC_000007.14:38353701:C:G
Gene:: TRG-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.00001/2 (GnomAD_exomes)
A=0.000312/2 (1000Genomes)
HGVS:: NC_000007.14:g.38353702C>A, NC_000007.14:g.38353702C>G, NC_000007.13:g.38393303C>A, NC_000007.13:g.38393303C>G, NG_001336.2:g.20246G>T, NG_001336.2:g.20246G>C

Select item 149052522817.

rs1490525228 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C,G [Show Flanks]
Chromosome:: 7:38339851 (GRCh38)
7:38379452 (GRCh37)
Canonical SPDI:: NC_000007.14:38339850:T:A,NC_000007.14:38339850:T:C,NC_000007.14:38339850:T:G
Gene:: TRG-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.000014/2 (GnomAD)
HGVS:: NC_000007.14:g.38339851T>A, NC_000007.14:g.38339851T>C, NC_000007.14:g.38339851T>G, NC_000007.13:g.38379452T>A, NC_000007.13:g.38379452T>C, NC_000007.13:g.38379452T>G, NG_001336.2:g.34097A>T, NG_001336.2:g.34097A>G, NG_001336.2:g.34097A>C

Select item 149045931718.

rs1490459317 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:38345637 (GRCh38)
7:38385238 (GRCh37)
Canonical SPDI:: NC_000007.14:38345636:A:G
Gene:: TRG-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000007.14:g.38345637A>G, NC_000007.13:g.38385238A>G, NG_001336.2:g.28311T>C

Select item 149042214319.

rs1490422143 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 7:38361911 (GRCh38)
7:38401512 (GRCh37)
Canonical SPDI:: NC_000007.14:38361910:C:A
Gene:: TRG-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000007.14:g.38361911C>A, NC_000007.13:g.38401512C>A, NG_001336.2:g.12037G>T

Select item 149040277920.

rs1490402779 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 7:38357418 (GRCh38)
7:38397019 (GRCh37)
Canonical SPDI:: NC_000007.14:38357417:A:G
Gene:: TRG-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000024/3 (GnomAD)
HGVS:: NC_000007.14:g.38357418A>G, NC_000007.13:g.38397019A>G, NG_001336.2:g.16530T>C, NM_001013738.1:c.*845T>C

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