SNP Links for Gene (Select 100507267) - SNP

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Select item 14915491251.

rs1491549125 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 5:170192489 (GRCh38)
5:169619494 (GRCh37)
Canonical SPDI:: NC_000005.10:170192489:A:AA
Gene:: LINC01187 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: AA=0.00006/1 (ALFA)
A=0.00022/1 (Estonian)
HGVS:: NC_000005.10:g.170192490dup, NC_000005.9:g.169619494dup

Select item 14914801022.

rs1491480102 has merged into rs66829839 [Homo sapiens]

Variant type:: DELINS
Alleles:: CC>-,C,CCC,CCCC [Show Flanks]
Chromosome:: 5:170195802 (GRCh38)
5:169622806 (GRCh37)
Canonical SPDI:: NC_000005.10:170195794:CCCCCCCCC:CCCCCCC,NC_000005.10:170195794:CCCCCCCCC:CCCCCCCC,NC_000005.10:170195794:CCCCCCCCC:CCCCCCCCCC,NC_000005.10:170195794:CCCCCCCCC:CCCCCCCCCCC
Gene:: LINC01187 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CCCCCCCCCCC=0./0 (ALFA)
C=0.3/12 (GENOME_DK)
-=0.432752/1937 (Estonian)
-=0.465/279 (NorthernSweden)
-=0.475952/475 (GoNL)
-=0.491697/1895 (ALSPAC)
C=0.49179/130172 (TOPMED)
C=0.498921/1850 (TWINSUK)
HGVS:: NC_000005.10:g.170195802_170195803del, NC_000005.10:g.170195803del, NC_000005.10:g.170195803dup, NC_000005.10:g.170195802_170195803dup, NC_000005.9:g.169622806_169622807del, NC_000005.9:g.169622807del, NC_000005.9:g.169622807dup, NC_000005.9:g.169622806_169622807dup

Select item 14903086603.

rs1490308660 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 5:170200880 (GRCh38)
5:169627884 (GRCh37)
Canonical SPDI:: NC_000005.10:170200879:T:C
Gene:: LINC01187 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000019/5 (TOPMED)
HGVS:: NC_000005.10:g.170200880T>C, NC_000005.9:g.169627884T>C

Select item 14902014844.

rs1490201484 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:170191621 (GRCh38)
5:169618625 (GRCh37)
Canonical SPDI:: NC_000005.10:170191620:C:T
Gene:: LINC01187 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000198/3 (ALFA)
T=0.000011/3 (TOPMED)
T=0.000022/3 (GnomAD)
T=0.00067/3 (Estonian)
T=0.008333/5 (NorthernSweden)
HGVS:: NC_000005.10:g.170191621C>T, NC_000005.9:g.169618625C>T

Select item 14899401045.

rs1489940104 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 5:170193457 (GRCh38)
5:169620461 (GRCh37)
Canonical SPDI:: NC_000005.10:170193456:C:A
Gene:: LINC01187 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000005.10:g.170193457C>A, NC_000005.9:g.169620461C>A

Select item 14893859186.

rs1489385918 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 5:170193835 (GRCh38)
5:169620839 (GRCh37)
Canonical SPDI:: NC_000005.10:170193834:A:T
Gene:: LINC01187 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
HGVS:: NC_000005.10:g.170193835A>T, NC_000005.9:g.169620839A>T

Select item 14889304737.

rs1488930473 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 5:170197168 (GRCh38)
5:169624172 (GRCh37)
Canonical SPDI:: NC_000005.10:170197167:A:G
Gene:: LINC01187 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.170197168A>G, NC_000005.9:g.169624172A>G

Select item 14882814048.

rs1488281404 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 5:170196140 (GRCh38)
5:169623144 (GRCh37)
Canonical SPDI:: NC_000005.10:170196139:T:C
Gene:: LINC01187 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.170196140T>C, NC_000005.9:g.169623144T>C

Select item 14881633809.

rs1488163380 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 5:170198916 (GRCh38)
5:169625920 (GRCh37)
Canonical SPDI:: NC_000005.10:170198915:G:A
Gene:: LINC01187 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000011/3 (TOPMED)
HGVS:: NC_000005.10:g.170198916G>A, NC_000005.9:g.169625920G>A, NR_108022.1:n.226C>T

Select item 148696415310.

rs1486964153 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->C [Show Flanks]
Chromosome:: 5:170198095 (GRCh38)
5:169625100 (GRCh37)
Canonical SPDI:: NC_000005.10:170198095:C:CC
Gene:: LINC01187 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: CC=0./0 (ALFA)
C=0.000019/5 (TOPMED)
HGVS:: NC_000005.10:g.170198096dup, NC_000005.9:g.169625100dup

Select item 148682088811.

rs1486820888 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 5:170199039 (GRCh38)
5:169626043 (GRCh37)
Canonical SPDI:: NC_000005.10:170199038:G:A
Gene:: LINC01187 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.170199039G>A, NC_000005.9:g.169626043G>A, NR_108022.1:n.103C>T

Select item 148630894912.

rs1486308949 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 5:170196511 (GRCh38)
5:169623515 (GRCh37)
Canonical SPDI:: NC_000005.10:170196510:A:G
Gene:: LINC01187 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000005.10:g.170196511A>G, NC_000005.9:g.169623515A>G, NR_108022.1:n.599T>C

Select item 148597916813.

rs1485979168 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 5:170198565 (GRCh38)
5:169625569 (GRCh37)
Canonical SPDI:: NC_000005.10:170198564:A:G
Gene:: LINC01187 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000005.10:g.170198565A>G, NC_000005.9:g.169625569A>G

Select item 148572584414.

rs1485725844 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 5:170194419 (GRCh38)
5:169621423 (GRCh37)
Canonical SPDI:: NC_000005.10:170194418:T:C
Gene:: LINC01187 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.170194419T>C, NC_000005.9:g.169621423T>C

Select item 148566529315.

rs1485665293 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:170198766 (GRCh38)
5:169625770 (GRCh37)
Canonical SPDI:: NC_000005.10:170198765:C:T
Gene:: LINC01187 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000019/5 (TOPMED)
T=0.000057/8 (GnomAD)
HGVS:: NC_000005.10:g.170198766C>T, NC_000005.9:g.169625770C>T, NR_108022.1:n.376G>A

Select item 148556282516.

rs1485562825 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 5:170200839 (GRCh38)
5:169627843 (GRCh37)
Canonical SPDI:: NC_000005.10:170200838:C:T
Gene:: LINC01187 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.170200839C>T, NC_000005.9:g.169627843C>T

Select item 148518862917.

rs1485188629 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 5:170198579 (GRCh38)
5:169625583 (GRCh37)
Canonical SPDI:: NC_000005.10:170198578:A:T
Gene:: LINC01187 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000005.10:g.170198579A>T, NC_000005.9:g.169625583A>T

Select item 148510978818.

rs1485109788 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 5:170193851 (GRCh38)
5:169620855 (GRCh37)
Canonical SPDI:: NC_000005.10:170193850:G:A
Gene:: LINC01187 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000005.10:g.170193851G>A, NC_000005.9:g.169620855G>A

Select item 148462731219.

rs1484627312 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 5:170198364 (GRCh38)
5:169625368 (GRCh37)
Canonical SPDI:: NC_000005.10:170198363:T:C
Gene:: LINC01187 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000671/3 (ALFA)
C=0.000021/3 (GnomAD)
C=0.00067/3 (Estonian)
HGVS:: NC_000005.10:g.170198364T>C, NC_000005.9:g.169625368T>C

Select item 148458455120.

rs1484584551 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 5:170199867 (GRCh38)
5:169626871 (GRCh37)
Canonical SPDI:: NC_000005.10:170199866:G:T
Gene:: LINC01187 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000005.10:g.170199867G>T, NC_000005.9:g.169626871G>T

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