SNP Links for Gene (Select 100507347) - SNP

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Select item 14914448351.

rs1491444835 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CCTCTC [Show Flanks]
Chromosome:: 10:17224446 (GRCh38)
10:17266446 (GRCh37)
Canonical SPDI:: NC_000010.11:17224446:CTCTC:CTCTCCCTCTC
Gene:: VIM-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: CTCTCCCTCTC=0./0 (ALFA)
HGVS:: NC_000010.11:g.17224447_17224451CT[2]CCCTCTC[1], NC_000010.10:g.17266446_17266450CT[2]CCCTCTC[1], NG_012413.1:g.1189_1193CT[2]CCCTCTC[1]

Select item 14911878312.

rs1491187831 has merged into rs371871136 [Homo sapiens]

Variant type:: DELINS
Alleles:: CTCTCTCT>-,CT,CTCT,CTCTCT,CTCTCTCTCT,CTCTCTCTCTCT,CTCTCTCTCTCTCT,CTCTCTCTCTCTCTCT,CTCTCTCTCTCTCTCTCT,CTCTCTCTCTCTCTCTCTCT,CTCTCTCTCTCTCTCTCTCTCT,CTCTCTCTCTCTCTCTCTCTCTCTCT [Show Flanks]
Chromosome:: 10:17224465 (GRCh38)
10:17266464 (GRCh37)
Canonical SPDI:: NC_000010.11:17224445:TCTCTCTCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCTCTCT,NC_000010.11:17224445:TCTCTCTCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCTCTCTCT,NC_000010.11:17224445:TCTCTCTCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCTCTCTCTCT,NC_000010.11:17224445:TCTCTCTCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCTCTCTCTCTCT,NC_000010.11:17224445:TCTCTCTCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCTCTCTCTCTCTCTCT,NC_000010.11:17224445:TCTCTCTCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT,NC_000010.11:17224445:TCTCTCTCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT,NC_000010.11:17224445:TCTCTCTCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT,NC_000010.11:17224445:TCTCTCTCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT,NC_000010.11:17224445:TCTCTCTCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT,NC_000010.11:17224445:TCTCTCTCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT,NC_000010.11:17224445:TCTCTCTCTCTCTCTCTCTCTCTCTCT:TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
Gene:: VIM-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TCTCTCTCTCTCTCTCTCTCT=0./0 (ALFA)
TCTCTCTCTCTCTCTCTC=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.17224447CT[9], NC_000010.11:g.17224447CT[10], NC_000010.11:g.17224447CT[11], NC_000010.11:g.17224447CT[12], NC_000010.11:g.17224447CT[14], NC_000010.11:g.17224447CT[15], NC_000010.11:g.17224447CT[16], NC_000010.11:g.17224447CT[17], NC_000010.11:g.17224447CT[18], NC_000010.11:g.17224447CT[19], NC_000010.11:g.17224447CT[20], NC_000010.11:g.17224447CT[22], NC_000010.10:g.17266446CT[9], NC_000010.10:g.17266446CT[10], NC_000010.10:g.17266446CT[11], NC_000010.10:g.17266446CT[12], NC_000010.10:g.17266446CT[14], NC_000010.10:g.17266446CT[15], NC_000010.10:g.17266446CT[16], NC_000010.10:g.17266446CT[17], NC_000010.10:g.17266446CT[18], NC_000010.10:g.17266446CT[19], NC_000010.10:g.17266446CT[20], NC_000010.10:g.17266446CT[22], NG_012413.1:g.1189CT[9], NG_012413.1:g.1189CT[10], NG_012413.1:g.1189CT[11], NG_012413.1:g.1189CT[12], NG_012413.1:g.1189CT[14], NG_012413.1:g.1189CT[15], NG_012413.1:g.1189CT[16], NG_012413.1:g.1189CT[17], NG_012413.1:g.1189CT[18], NG_012413.1:g.1189CT[19], NG_012413.1:g.1189CT[20], NG_012413.1:g.1189CT[22]

Select item 14910438133.

rs1491043813 has merged into rs565004468 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAAAA>-,A,AAAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 10:17220232 (GRCh38)
10:17262231 (GRCh37)
Canonical SPDI:: NC_000010.11:17220223:AAAAAAAAAAAAAAAAAAA:AAAAAAAA,NC_000010.11:17220223:AAAAAAAAAAAAAAAAAAA:AAAAAAAAA,NC_000010.11:17220223:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000010.11:17220223:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000010.11:17220223:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000010.11:17220223:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000010.11:17220223:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000010.11:17220223:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000010.11:17220223:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000010.11:17220223:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000010.11:17220223:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:17220223:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000010.11:17220223:AAAAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA
Gene:: VIM-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAA=0./0 (ALFA)
A=0.02166/12 (NorthernSweden)
HGVS:: NC_000010.11:g.17220232_17220242del, NC_000010.11:g.17220233_17220242del, NC_000010.11:g.17220237_17220242del, NC_000010.11:g.17220238_17220242del, NC_000010.11:g.17220239_17220242del, NC_000010.11:g.17220240_17220242del, NC_000010.11:g.17220241_17220242del, NC_000010.11:g.17220242del, NC_000010.11:g.17220242dup, NC_000010.11:g.17220241_17220242dup, NC_000010.11:g.17220240_17220242dup, NC_000010.11:g.17220239_17220242dup, NC_000010.11:g.17220238_17220242dup, NC_000010.10:g.17262231_17262241del, NC_000010.10:g.17262232_17262241del, NC_000010.10:g.17262236_17262241del, NC_000010.10:g.17262237_17262241del, NC_000010.10:g.17262238_17262241del, NC_000010.10:g.17262239_17262241del, NC_000010.10:g.17262240_17262241del, NC_000010.10:g.17262241del, NC_000010.10:g.17262241dup, NC_000010.10:g.17262240_17262241dup, NC_000010.10:g.17262239_17262241dup, NC_000010.10:g.17262238_17262241dup, NC_000010.10:g.17262237_17262241dup

Select item 14908628084.

rs1490862808 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->C [Show Flanks]
Chromosome:: 10:17230637 (GRCh38)
10:17272637 (GRCh37)
Canonical SPDI:: NC_000010.11:17230637:C:CC
Gene:: VIM (Varview), VIM-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CC=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.17230638dup, NC_000010.10:g.17272637dup, NG_012413.1:g.7380dup

Select item 14908005135.

rs1490800513 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 10:17223644 (GRCh38)
10:17265643 (GRCh37)
Canonical SPDI:: NC_000010.11:17223643:C:A,NC_000010.11:17223643:C:T
Gene:: VIM-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.17223644C>A, NC_000010.11:g.17223644C>T, NC_000010.10:g.17265643C>A, NC_000010.10:g.17265643C>T, NG_012413.1:g.386C>A, NG_012413.1:g.386C>T

Select item 14906880706.

rs1490688070 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 10:17214055 (GRCh38)
10:17256054 (GRCh37)
Canonical SPDI:: NC_000010.11:17214054:C:A,NC_000010.11:17214054:C:T
Gene:: VIM-AS1 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
HGVS:: NC_000010.11:g.17214055C>A, NC_000010.11:g.17214055C>T, NC_000010.10:g.17256054C>A, NC_000010.10:g.17256054C>T

Select item 14904688897.

rs1490468889 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:17228409 (GRCh38)
10:17270408 (GRCh37)
Canonical SPDI:: NC_000010.11:17228408:T:C
Gene:: VIM (Varview), VIM-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000019/5 (TOPMED)
C=0.000035/1 (TOMMO)
C=0.000036/5 (GnomAD)
C=0.001667/1 (NorthernSweden)
HGVS:: NC_000010.11:g.17228409T>C, NC_000010.10:g.17270408T>C, NG_012413.1:g.5151T>C, NM_003380.5:c.-263T>C, NM_003380.4:c.-263T>C, NM_003380.3:c.-263T>C

Select item 14903730988.

rs1490373098 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:17231017 (GRCh38)
10:17273016 (GRCh37)
Canonical SPDI:: NC_000010.11:17231016:G:A
Gene:: VIM (Varview), VIM-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000010.11:g.17231017G>A, NC_000010.10:g.17273016G>A, NG_012413.1:g.7759G>A

Select item 14900449819.

rs1490044981 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:17230333 (GRCh38)
10:17272332 (GRCh37)
Canonical SPDI:: NC_000010.11:17230332:G:A
Gene:: VIM (Varview), VIM-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000010.11:g.17230333G>A, NC_000010.10:g.17272332G>A, NG_012413.1:g.7075G>A

Select item 148991551510.

rs1489915515 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 10:17228426 (GRCh38)
10:17270425 (GRCh37)
Canonical SPDI:: NC_000010.11:17228425:T:C
Gene:: VIM (Varview), VIM-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.17228426T>C, NC_000010.10:g.17270425T>C, NG_012413.1:g.5168T>C, NM_003380.5:c.-246T>C, NM_003380.4:c.-246T>C, NM_003380.3:c.-246T>C

Select item 148934882211.

rs1489348822 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 10:17222341 (GRCh38)
10:17264340 (GRCh37)
Canonical SPDI:: NC_000010.11:17222340:T:A
Gene:: VIM-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000010.11:g.17222341T>A, NC_000010.10:g.17264340T>A

Select item 148919734712.

rs1489197347 [Homo sapiens]

Variant type:: DELINS
Alleles:: T>-,TT [Show Flanks]
Chromosome:: 10:17214356 (GRCh38)
10:17256355 (GRCh37)
Canonical SPDI:: NC_000010.11:17214355:TTTTTT:TTTTT,NC_000010.11:17214355:TTTTTT:TTTTTTT
Gene:: VIM-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTT=0.00007/1 (ALFA)
HGVS:: NC_000010.11:g.17214361del, NC_000010.11:g.17214361dup, NC_000010.10:g.17256360del, NC_000010.10:g.17256360dup, NR_108061.1:n.1758del, NR_108061.1:n.1758dup, NR_108060.1:n.1234del, NR_108060.1:n.1234dup

Select item 148913433313.

rs1489134333 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:17215377 (GRCh38)
10:17257376 (GRCh37)
Canonical SPDI:: NC_000010.11:17215376:G:A
Gene:: VIM-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.17215377G>A, NC_000010.10:g.17257376G>A

Select item 148912417914.

rs1489124179 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:17215387 (GRCh38)
10:17257386 (GRCh37)
Canonical SPDI:: NC_000010.11:17215386:A:G
Gene:: VIM-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000011/3 (TOPMED)
HGVS:: NC_000010.11:g.17215387A>G, NC_000010.10:g.17257386A>G

Select item 148909371715.

rs1489093717 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 10:17215673 (GRCh38)
10:17257672 (GRCh37)
Canonical SPDI:: NC_000010.11:17215672:G:A,NC_000010.11:17215672:G:T
Gene:: VIM-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000011/3 (TOPMED)
HGVS:: NC_000010.11:g.17215673G>A, NC_000010.11:g.17215673G>T, NC_000010.10:g.17257672G>A, NC_000010.10:g.17257672G>T

Select item 148897693416.

rs1488976934 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:17228553 (GRCh38)
10:17270552 (GRCh37)
Canonical SPDI:: NC_000010.11:17228552:C:T
Gene:: VIM (Varview), VIM-AS1 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
T=0.000546/1 (Korea1K)
T=0.001026/17 (TOMMO)
T=0.001712/5 (KOREAN)
HGVS:: NC_000010.11:g.17228553C>T, NC_000010.10:g.17270552C>T, NG_012413.1:g.5295C>T

Select item 148879010917.

rs1488790109 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,G [Show Flanks]
Chromosome:: 10:17225121 (GRCh38)
10:17267120 (GRCh37)
Canonical SPDI:: NC_000010.11:17225120:T:A,NC_000010.11:17225120:T:G
Gene:: VIM-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
HGVS:: NC_000010.11:g.17225121T>A, NC_000010.11:g.17225121T>G, NC_000010.10:g.17267120T>A, NC_000010.10:g.17267120T>G, NG_012413.1:g.1863T>A, NG_012413.1:g.1863T>G

Select item 148854364118.

rs1488543641 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 10:17222759 (GRCh38)
10:17264758 (GRCh37)
Canonical SPDI:: NC_000010.11:17222758:A:T
Gene:: VIM-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000010.11:g.17222759A>T, NC_000010.10:g.17264758A>T

Select item 148847664419.

rs1488476644 [Homo sapiens]

Variant type:: DEL
Alleles:: TA>- [Show Flanks]
Chromosome:: 10:17214787 (GRCh38)
10:17256786 (GRCh37)
Canonical SPDI:: NC_000010.11:17214786:TA:
Gene:: VIM-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.17214787_17214788del, NC_000010.10:g.17256786_17256787del, NR_108061.1:n.1326_1327del, NR_108060.1:n.802_803del

Select item 148845535220.

rs1488455352 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 10:17223080 (GRCh38)
10:17265079 (GRCh37)
Canonical SPDI:: NC_000010.11:17223079:T:A
Gene:: VIM-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.17223080T>A, NC_000010.10:g.17265079T>A

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