SNP Links for Gene (Select 100507392) - SNP

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Select item 14903760001.

rs1490376000 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 11:128697183 (GRCh38)
11:128567078 (GRCh37)
Canonical SPDI:: NC_000011.10:128697182:A:C
Gene:: FLI1 (Varview), SENCR (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0.000071/1 (ALFA)
C=0.000011/3 (TOPMED)
HGVS:: NC_000011.10:g.128697183A>C, NC_000011.9:g.128567078A>C, NG_032912.1:g.15649A>C

Select item 14901781972.

rs1490178197 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 11:128694397 (GRCh38)
11:128564292 (GRCh37)
Canonical SPDI:: NC_000011.10:128694396:C:A
Gene:: FLI1 (Varview), SENCR (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant
Validated:: by frequency
MAF:: A=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.128694397C>A, NC_000011.9:g.128564292C>A, NG_032912.1:g.12863C>A

Select item 14890113933.

rs1489011393 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:128695054 (GRCh38)
11:128564949 (GRCh37)
Canonical SPDI:: NC_000011.10:128695053:C:T
Gene:: FLI1 (Varview), SENCR (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000011.10:g.128695054C>T, NC_000011.9:g.128564949C>T, NG_032912.1:g.13520C>T

Select item 14889382644.

rs1488938264 has merged into rs1267810573 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>-,GG [Show Flanks]
Chromosome:: 11:128692313 (GRCh38)
11:128562208 (GRCh37)
Canonical SPDI:: NC_000011.10:128692312:GGGGGGG:GGGGGG,NC_000011.10:128692312:GGGGGGG:GGGGGGGG
Gene:: FLI1 (Varview), SENCR (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGGGGGGG=0./0 (ALFA)
HGVS:: NC_000011.10:g.128692319del, NC_000011.10:g.128692319dup, NC_000011.9:g.128562214del, NC_000011.9:g.128562214dup, NG_032912.1:g.10785del, NG_032912.1:g.10785dup

Select item 14873709435.

rs1487370943 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:128693014 (GRCh38)
11:128562909 (GRCh37)
Canonical SPDI:: NC_000011.10:128693013:G:A
Gene:: FLI1 (Varview), SENCR (Varview)
Functional Consequence:: non_coding_transcript_variant,genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.128693014G>A, NC_000011.9:g.128562909G>A, NG_032912.1:g.11480G>A, NR_038908.1:n.489C>T

Select item 14871125016.

rs1487112501 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:128693865 (GRCh38)
11:128563760 (GRCh37)
Canonical SPDI:: NC_000011.10:128693864:G:A
Gene:: FLI1 (Varview), SENCR (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.128693865G>A, NC_000011.9:g.128563760G>A, NG_032912.1:g.12331G>A

Select item 14868317527.

rs1486831752 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:128694238 (GRCh38)
11:128564133 (GRCh37)
Canonical SPDI:: NC_000011.10:128694237:C:T
Gene:: FLI1 (Varview), SENCR (Varview)
Functional Consequence:: genic_upstream_transcript_variant,5_prime_UTR_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000137/1 (ALFA)
T=0.000006/1 (GnomAD_exomes)
HGVS:: NC_000011.10:g.128694238C>T, NC_000011.9:g.128564133C>T, NG_032912.1:g.12704C>T, NM_002017.5:c.-21C>T, NM_002017.4:c.-21C>T, NM_001167681.3:c.-174C>T, NM_001167681.2:c.-174C>T, NM_001271010.2:c.-390C>T, NM_001271010.1:c.-390C>T, XM_011542702.2:c.-21C>T, XM_011542702.1:c.-21C>T

Select item 14865806798.

rs1486580679 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 11:128696200 (GRCh38)
11:128566095 (GRCh37)
Canonical SPDI:: NC_000011.10:128696199:A:C,NC_000011.10:128696199:A:G
Gene:: FLI1 (Varview), SENCR (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
C=0.001092/2 (Korea1K)
HGVS:: NC_000011.10:g.128696200A>C, NC_000011.10:g.128696200A>G, NC_000011.9:g.128566095A>C, NC_000011.9:g.128566095A>G, NG_032912.1:g.14666A>C, NG_032912.1:g.14666A>G

Select item 14865288629.

rs1486528862 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 11:128697361 (GRCh38)
11:128567256 (GRCh37)
Canonical SPDI:: NC_000011.10:128697360:T:A
Gene:: FLI1 (Varview), SENCR (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000011.10:g.128697361T>A, NC_000011.9:g.128567256T>A, NG_032912.1:g.15827T>A

Select item 148521803610.

rs1485218036 [Homo sapiens]

Variant type:: DELINS
Alleles:: AGTG>- [Show Flanks]
Chromosome:: 11:128694799 (GRCh38)
11:128564694 (GRCh37)
Canonical SPDI:: NC_000011.10:128694794:AGTGAGTG:AGTG
Gene:: FLI1 (Varview), SENCR (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AGTGAGTG=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.128694795AGTG[1], NC_000011.9:g.128564690AGTG[1], NG_032912.1:g.13261AGTG[1]

Select item 148510655711.

rs1485106557 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 11:128693948 (GRCh38)
11:128563843 (GRCh37)
Canonical SPDI:: NC_000011.10:128693947:G:C
Gene:: FLI1 (Varview), SENCR (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.00003/1 (GnomAD)
HGVS:: NC_000011.10:g.128693948G>C, NC_000011.9:g.128563843G>C, NG_032912.1:g.12414G>C, NM_002017.4:c.-311G>C, NM_001167681.2:c.-464G>C, NM_001271010.1:c.-680G>C

Select item 148490504512.

rs1484905045 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:128693890 (GRCh38)
11:128563785 (GRCh37)
Canonical SPDI:: NC_000011.10:128693889:A:G
Gene:: FLI1 (Varview), SENCR (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.06481/189 (KOREAN)
HGVS:: NC_000011.10:g.128693890A>G, NC_000011.9:g.128563785A>G, NG_032912.1:g.12356A>G

Select item 148419941913.

rs1484199419 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 11:128697547 (GRCh38)
11:128567442 (GRCh37)
Canonical SPDI:: NC_000011.10:128697546:T:C
Gene:: FLI1 (Varview), SENCR (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000011.10:g.128697547T>C, NC_000011.9:g.128567442T>C, NG_032912.1:g.16013T>C

Select item 148369311014.

rs1483693110 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 11:128695114 (GRCh38)
11:128565009 (GRCh37)
Canonical SPDI:: NC_000011.10:128695113:C:T
Gene:: FLI1 (Varview), SENCR (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
T=0.00003/8 (TOPMED)
T=0.000672/11 (TOMMO)
T=0.001125/2 (Korea1K)
T=0.001717/5 (KOREAN)
HGVS:: NC_000011.10:g.128695114C>T, NC_000011.9:g.128565009C>T, NG_032912.1:g.13580C>T

Select item 148367240115.

rs1483672401 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 11:128691714 (GRCh38)
11:128561609 (GRCh37)
Canonical SPDI:: NC_000011.10:128691713:A:G
Gene:: FLI1 (Varview), SENCR (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000011.10:g.128691714A>G, NC_000011.9:g.128561609A>G, NG_032912.1:g.10180A>G, NR_038908.1:n.1256T>C

Select item 148313124016.

rs1483131240 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 11:128692455 (GRCh38)
11:128562350 (GRCh37)
Canonical SPDI:: NC_000011.10:128692454:A:C
Gene:: FLI1 (Varview), SENCR (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency
MAF:: C=0.0259/74 (KOREAN)
HGVS:: NC_000011.10:g.128692455A>C, NC_000011.9:g.128562350A>C, NG_032912.1:g.10921A>C

Select item 148205524817.

rs1482055248 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 11:128696336 (GRCh38)
11:128566231 (GRCh37)
Canonical SPDI:: NC_000011.10:128696335:A:C
Gene:: FLI1 (Varview), SENCR (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.128696336A>C, NC_000011.9:g.128566231A>C, NG_032912.1:g.14802A>C

Select item 148200742618.

rs1482007426 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 11:128695145 (GRCh38)
11:128565040 (GRCh37)
Canonical SPDI:: NC_000011.10:128695144:G:A
Gene:: FLI1 (Varview), SENCR (Varview)
Functional Consequence:: upstream_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000011.10:g.128695145G>A, NC_000011.9:g.128565040G>A, NG_032912.1:g.13611G>A

Select item 148169071719.

rs1481690717 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 11:128692147 (GRCh38)
11:128562042 (GRCh37)
Canonical SPDI:: NC_000011.10:128692146:G:C
Gene:: FLI1 (Varview), SENCR (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
C=0.000021/3 (GnomAD)
HGVS:: NC_000011.10:g.128692147G>C, NC_000011.9:g.128562042G>C, NG_032912.1:g.10613G>C

Select item 148163073220.

rs1481630732 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 11:128693716 (GRCh38)
11:128563611 (GRCh37)
Canonical SPDI:: NC_000011.10:128693715:G:T
Gene:: FLI1 (Varview), SENCR (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000011.10:g.128693716G>T, NC_000011.9:g.128563611G>T, NG_032912.1:g.12182G>T

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