SNP Links for Gene (Select 100507419) - SNP

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Select item 14913424491.

rs1491342449 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->TT [Show Flanks]
Chromosome:: 16:3052129 (GRCh38)
16:3102131 (GRCh37)
Canonical SPDI:: NC_000016.10:3052129:T:TTT
Gene:: MMP25 (Varview), MMP25-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: TTT=0./0 (ALFA)
TT=0.000008/2 (TOPMED)
HGVS:: NC_000016.10:g.3052130_3052131insTT, NC_000016.9:g.3102131_3102132insTT, NR_123723.1:n.2334_2335insAA

Select item 14909487752.

rs1490948775 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:3053305 (GRCh38)
16:3103306 (GRCh37)
Canonical SPDI:: NC_000016.10:3053304:G:A
Gene:: MMP25 (Varview), MMP25-AS1 (Varview), LOC124900372 (Varview)
Functional Consequence:: 500B_downstream_variant,intron_variant,genic_upstream_transcript_variant,upstream_transcript_variant,non_coding_transcript_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.000169/2 (ALFA)
A=0.00023/32 (GnomAD)
HGVS:: NC_000016.10:g.3053305G>A, NC_000016.9:g.3103306G>A, NR_123723.1:n.1159C>T

Select item 14909252793.

rs1490925279 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 16:3061049 (GRCh38)
16:3111050 (GRCh37)
Canonical SPDI:: NC_000016.10:3061048:A:G
Gene:: MMP25 (Varview), MMP25-AS1 (Varview), LOC124900372 (Varview)
Functional Consequence:: 2KB_upstream_variant,500B_downstream_variant,downstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0.000071/1 (ALFA)
G=0.000015/4 (TOPMED)
HGVS:: NC_000016.10:g.3061049A>G, NC_000016.9:g.3111050A>G, NG_029254.1:g.738A>G

Select item 14905295884.

rs1490529588 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 16:3052523 (GRCh38)
16:3102524 (GRCh37)
Canonical SPDI:: NC_000016.10:3052522:A:G
Gene:: MMP25 (Varview), MMP25-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0.0002/1 (ALFA)
HGVS:: NC_000016.10:g.3052523A>G, NC_000016.9:g.3102524A>G, NR_123723.1:n.1941T>C

Select item 14899911175.

rs1489991117 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 16:3061310 (GRCh38)
16:3111311 (GRCh37)
Canonical SPDI:: NC_000016.10:3061309:A:G
Gene:: MMP25-AS1 (Varview), LOC124900372 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
G=0.000035/1 (TOMMO)
HGVS:: NC_000016.10:g.3061310A>G, NC_000016.9:g.3111311A>G, NG_029254.1:g.999A>G

Select item 14897642646.

rs1489764264 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:3060728 (GRCh38)
16:3110729 (GRCh37)
Canonical SPDI:: NC_000016.10:3060727:C:T
Gene:: MMP25 (Varview), MMP25-AS1 (Varview), LOC124900372 (Varview)
Functional Consequence:: 2KB_upstream_variant,500B_downstream_variant,downstream_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.3060728C>T, NC_000016.9:g.3110729C>T, NG_029254.1:g.417C>T

Select item 14892598107.

rs1489259810 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 16:3054833 (GRCh38)
16:3104834 (GRCh37)
Canonical SPDI:: NC_000016.10:3054832:G:T
Gene:: MMP25 (Varview), MMP25-AS1 (Varview), LOC124900372 (Varview)
Functional Consequence:: upstream_transcript_variant,5_prime_UTR_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000016.10:g.3054833G>T, NC_000016.9:g.3104834G>T, XM_047434998.1:c.-58C>A, XM_047434999.1:c.-58C>A, XM_047435000.1:c.-58C>A

Select item 14890630168.

rs1489063016 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:3052417 (GRCh38)
16:3102418 (GRCh37)
Canonical SPDI:: NC_000016.10:3052416:G:A
Gene:: MMP25 (Varview), MMP25-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.3052417G>A, NC_000016.9:g.3102418G>A, NR_123723.1:n.2047C>T

Select item 14884998999.

rs1488499899 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 16:3055113 (GRCh38)
16:3105114 (GRCh37)
Canonical SPDI:: NC_000016.10:3055112:A:C
Gene:: MMP25 (Varview), MMP25-AS1 (Varview), LOC124900372 (Varview)
Functional Consequence:: 5_prime_UTR_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0.000214/3 (ALFA)
C=0.000091/24 (TOPMED)
C=0.000136/19 (GnomAD)
HGVS:: NC_000016.10:g.3055113A>C, NC_000016.9:g.3105114A>C, XM_047434484.1:c.-114A>C

Select item 148847391410.

rs1488473914 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:3056428 (GRCh38)
16:3106429 (GRCh37)
Canonical SPDI:: NC_000016.10:3056427:C:T
Gene:: MMP25 (Varview), MMP25-AS1 (Varview), LOC124900372 (Varview)
Functional Consequence:: downstream_transcript_variant,genic_downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000021/3 (GnomAD)
HGVS:: NC_000016.10:g.3056428C>T, NC_000016.9:g.3106429C>T, NM_004142.1:c.*479C>T

Select item 148791534611.

rs1487915346 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:3058967 (GRCh38)
16:3108968 (GRCh37)
Canonical SPDI:: NC_000016.10:3058966:C:T
Gene:: MMP25 (Varview), MMP25-AS1 (Varview), LOC124900372 (Varview)
Functional Consequence:: coding_sequence_variant,genic_downstream_transcript_variant,intron_variant,missense_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000142/2 (ALFA)
T=0.000006/1 (GnomAD_exomes)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000016.10:g.3058967C>T, NC_000016.9:g.3108968C>T, NM_022468.5:c.1558C>T, NM_022468.4:c.1558C>T, XM_011522605.3:c.928C>T, XM_011522605.2:c.928C>T, XM_011522605.1:c.928C>T, XM_024450391.2:c.1456C>T, XM_024450391.1:c.1456C>T, XM_024450390.2:c.1129C>T, XM_024450390.1:c.1129C>T, NM_022718.2:c.1558C>T, XM_047434484.1:c.928C>T, NM_022718.1:c.1558C>T, NP_071913.1:p.Pro520Ser, XP_011520907.1:p.Pro310Ser, XP_024306159.1:p.Pro486Ser, XP_024306158.1:p.Pro377Ser, XP_047290440.1:p.Pro310Ser

Select item 148785207212.

rs1487852072 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 16:3053876 (GRCh38)
16:3103877 (GRCh37)
Canonical SPDI:: NC_000016.10:3053875:G:A,NC_000016.10:3053875:G:C,NC_000016.10:3053875:G:T
Gene:: MMP25 (Varview), MMP25-AS1 (Varview), LOC124900372 (Varview)
Functional Consequence:: intron_variant,coding_sequence_variant,genic_upstream_transcript_variant,synonymous_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.3053876G>A, NC_000016.10:g.3053876G>C, NC_000016.10:g.3053876G>T, NC_000016.9:g.3103877G>A, NC_000016.9:g.3103877G>C, NC_000016.9:g.3103877G>T, XM_047434998.1:c.900C>T, XM_047434998.1:c.900C>G, XM_047434998.1:c.900C>A, XM_047434999.1:c.900C>T, XM_047434999.1:c.900C>G, XM_047434999.1:c.900C>A, XM_047435000.1:c.900C>T, XM_047435000.1:c.900C>G, XM_047435000.1:c.900C>A

Select item 148768061313.

rs1487680613 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 16:3054230 (GRCh38)
16:3104231 (GRCh37)
Canonical SPDI:: NC_000016.10:3054229:A:G
Gene:: MMP25 (Varview), MMP25-AS1 (Varview), LOC124900372 (Varview)
Functional Consequence:: intron_variant,coding_sequence_variant,genic_upstream_transcript_variant,synonymous_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.3054230A>G, NC_000016.9:g.3104231A>G, XM_047434998.1:c.546T>C, XM_047434999.1:c.546T>C, XM_047435000.1:c.546T>C

Select item 148752105914.

rs1487521059 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: 16:3054518 (GRCh38)
16:3104519 (GRCh37)
Canonical SPDI:: NC_000016.10:3054517:A:C,NC_000016.10:3054517:A:G
Gene:: MMP25 (Varview), MMP25-AS1 (Varview), LOC124900372 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,upstream_transcript_variant,intron_variant,synonymous_variant,coding_sequence_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000048/5 (GnomAD)
G=0.00012/2 (TOMMO)
G=0.161533/472 (KOREAN)
HGVS:: NC_000016.10:g.3054518A>C, NC_000016.10:g.3054518A>G, NC_000016.9:g.3104519A>C, NC_000016.9:g.3104519A>G, XM_047434998.1:c.258T>G, XM_047434998.1:c.258T>C, XM_047434999.1:c.258T>G, XM_047434999.1:c.258T>C, XM_047435000.1:c.258T>G, XM_047435000.1:c.258T>C

Select item 148747719015.

rs1487477190 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 16:3051654 (GRCh38)
16:3101655 (GRCh37)
Canonical SPDI:: NC_000016.10:3051653:C:A
Gene:: MMP25 (Varview), MMP25-AS1 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,intron_variant,downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000016.10:g.3051654C>A, NC_000016.9:g.3101655C>A

Select item 148739569216.

rs1487395692 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 16:3059970 (GRCh38)
16:3109971 (GRCh37)
Canonical SPDI:: NC_000016.10:3059969:T:C
Gene:: MMP25 (Varview), MMP25-AS1 (Varview), LOC124900372 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_downstream_transcript_variant,2KB_upstream_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000019/5 (TOPMED)
HGVS:: NC_000016.10:g.3059970T>C, NC_000016.9:g.3109971T>C, NM_022468.5:c.*872T>C, NM_022468.4:c.*872T>C, XM_011522605.3:c.*872T>C, XM_011522605.2:c.*872T>C, XM_011522605.1:c.*872T>C, XM_024450391.2:c.*872T>C, XM_024450391.1:c.*872T>C, XM_024450390.2:c.*872T>C, XM_024450390.1:c.*872T>C, NM_022718.2:c.*412T>C, XM_047434484.1:c.*872T>C, NM_022718.1:c.*412T>C

Select item 148729191117.

rs1487291911 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G,T [Show Flanks]
Chromosome:: 16:3059949 (GRCh38)
16:3109950 (GRCh37)
Canonical SPDI:: NC_000016.10:3059948:C:A,NC_000016.10:3059948:C:G,NC_000016.10:3059948:C:T
Gene:: MMP25 (Varview), MMP25-AS1 (Varview), LOC124900372 (Varview)
Functional Consequence:: upstream_transcript_variant,genic_downstream_transcript_variant,2KB_upstream_variant,3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
HGVS:: NC_000016.10:g.3059949C>A, NC_000016.10:g.3059949C>G, NC_000016.10:g.3059949C>T, NC_000016.9:g.3109950C>A, NC_000016.9:g.3109950C>G, NC_000016.9:g.3109950C>T, NM_022468.5:c.*851C>A, NM_022468.5:c.*851C>G, NM_022468.5:c.*851C>T, NM_022468.4:c.*851C>A, NM_022468.4:c.*851C>G, NM_022468.4:c.*851C>T, XM_011522605.3:c.*851C>A, XM_011522605.3:c.*851C>G, XM_011522605.3:c.*851C>T, XM_011522605.2:c.*851C>A, XM_011522605.2:c.*851C>G, XM_011522605.2:c.*851C>T, XM_011522605.1:c.*851C>A, XM_011522605.1:c.*851C>G, XM_011522605.1:c.*851C>T, XM_024450391.2:c.*851C>A, XM_024450391.2:c.*851C>G, XM_024450391.2:c.*851C>T, XM_024450391.1:c.*851C>A, XM_024450391.1:c.*851C>G, XM_024450391.1:c.*851C>T, XM_024450390.2:c.*851C>A, XM_024450390.2:c.*851C>G, XM_024450390.2:c.*851C>T, XM_024450390.1:c.*851C>A, XM_024450390.1:c.*851C>G, XM_024450390.1:c.*851C>T, NM_022718.2:c.*391C>A, NM_022718.2:c.*391C>G, NM_022718.2:c.*391C>T, XM_047434484.1:c.*851C>A, XM_047434484.1:c.*851C>G, XM_047434484.1:c.*851C>T, NM_022718.1:c.*391C>A, NM_022718.1:c.*391C>G, NM_022718.1:c.*391C>T

Select item 148702751218.

rs1487027512 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C [Show Flanks]
Chromosome:: 16:3055945 (GRCh38)
16:3105946 (GRCh37)
Canonical SPDI:: NC_000016.10:3055944:G:A,NC_000016.10:3055944:G:C
Gene:: MMP25 (Varview), MMP25-AS1 (Varview), LOC124900372 (Varview)
Functional Consequence:: intron_variant,coding_sequence_variant,missense_variant,5_prime_UTR_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000019/5 (TOPMED)
C=0.000029/4 (GnomAD)
HGVS:: NC_000016.10:g.3055945G>A, NC_000016.10:g.3055945G>C, NC_000016.9:g.3105946G>A, NC_000016.9:g.3105946G>C, XM_017023561.2:c.860G>A, XM_017023561.2:c.860G>C, XM_017023561.1:c.860G>A, XM_017023561.1:c.860G>C, XM_047434998.1:c.-467C>T, XM_047434998.1:c.-467C>G, XM_047434999.1:c.-467C>T, XM_047434999.1:c.-467C>G, NR_123723.1:n.539C>T, NR_123723.1:n.539C>G, XM_047435000.1:c.-467C>T, XM_047435000.1:c.-467C>G, NM_004142.1:c.548G>A, NM_004142.1:c.548G>C, XP_016879050.1:p.Ser287Asn, XP_016879050.1:p.Ser287Thr

Select item 148701722119.

rs1487017221 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 16:3056125 (GRCh38)
16:3106126 (GRCh37)
Canonical SPDI:: NC_000016.10:3056124:G:C
Gene:: MMP25 (Varview), MMP25-AS1 (Varview), LOC124900372 (Varview)
Functional Consequence:: genic_downstream_transcript_variant,intron_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000015/4 (TOPMED)
HGVS:: NC_000016.10:g.3056125G>C, NC_000016.9:g.3106126G>C, NM_004142.1:c.*176G>C

Select item 148701005720.

rs1487010057 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 16:3053294 (GRCh38)
16:3103295 (GRCh37)
Canonical SPDI:: NC_000016.10:3053293:A:G
Gene:: MMP25 (Varview), MMP25-AS1 (Varview), LOC124900372 (Varview)
Functional Consequence:: genic_upstream_transcript_variant,upstream_transcript_variant,500B_downstream_variant,intron_variant,downstream_transcript_variant,non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000122/2 (ALFA)
G=0.000029/4 (GnomAD)
G=0.000156/1 (1000Genomes)
HGVS:: NC_000016.10:g.3053294A>G, NC_000016.9:g.3103295A>G, NR_123723.1:n.1170T>C

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