SNP Links for Gene (Select 100507458) - SNP

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Select item 14915442811.

rs1491544281 [Homo sapiens]

Variant type:: DELINS
Alleles:: TA>- [Show Flanks]
Chromosome:: 16:3133770 (GRCh38)
16:3183771 (GRCh37)
Canonical SPDI:: NC_000016.10:3133764:ATATATA:ATATA
Gene:: ZNF213 (Varview), ZNF213-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: ATATA=0./0 (ALFA)
-=0.000008/1 (GnomAD)
HGVS:: NC_000016.10:g.3133766TA[2], NC_000016.9:g.3183767TA[2]

Select item 14914820462.

rs1491482046 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 16:3133079 (GRCh38)
16:3183080 (GRCh37)
Canonical SPDI:: NC_000016.10:3133078:CA:
Gene:: ZNF213 (Varview), ZNF213-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000016.10:g.3133079_3133080del, NC_000016.9:g.3183080_3183081del

Select item 14913676163.

rs1491367616 has merged into rs1193920893 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAA>-,A,AA,AAA,AAAAA,AAAAAA,AAAAAAA,AAAAAAAA,AAAAAAAAA,AAAAAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAA,AAAAAAAAAAAAA,AAAAAAAAAAAAAA,AAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAA,AAAAAAAAAAAAAAAAAAA [Show Flanks]
Chromosome:: 16:3133728 (GRCh38)
16:3183729 (GRCh37)
Canonical SPDI:: NC_000016.10:3133715:AAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000016.10:3133715:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000016.10:3133715:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000016.10:3133715:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000016.10:3133715:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA,NC_000016.10:3133715:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000016.10:3133715:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000016.10:3133715:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAA,NC_000016.10:3133715:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAA,NC_000016.10:3133715:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAA,NC_000016.10:3133715:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000016.10:3133715:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAA,NC_000016.10:3133715:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA,NC_000016.10:3133715:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000016.10:3133715:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000016.10:3133715:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000016.10:3133715:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA,NC_000016.10:3133715:AAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gene:: ZNF213 (Varview), ZNF213-AS1 (Varview)
Functional Consequence:: intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAA=0./0 (ALFA)
HGVS:: NC_000016.10:g.3133728_3133731del, NC_000016.10:g.3133729_3133731del, NC_000016.10:g.3133730_3133731del, NC_000016.10:g.3133731del, NC_000016.10:g.3133731dup, NC_000016.10:g.3133730_3133731dup, NC_000016.10:g.3133729_3133731dup, NC_000016.10:g.3133728_3133731dup, NC_000016.10:g.3133727_3133731dup, NC_000016.10:g.3133726_3133731dup, NC_000016.10:g.3133725_3133731dup, NC_000016.10:g.3133724_3133731dup, NC_000016.10:g.3133723_3133731dup, NC_000016.10:g.3133722_3133731dup, NC_000016.10:g.3133721_3133731dup, NC_000016.10:g.3133720_3133731dup, NC_000016.10:g.3133719_3133731dup, NC_000016.10:g.3133717_3133731dup, NC_000016.9:g.3183729_3183732del, NC_000016.9:g.3183730_3183732del, NC_000016.9:g.3183731_3183732del, NC_000016.9:g.3183732del, NC_000016.9:g.3183732dup, NC_000016.9:g.3183731_3183732dup, NC_000016.9:g.3183730_3183732dup, NC_000016.9:g.3183729_3183732dup, NC_000016.9:g.3183728_3183732dup, NC_000016.9:g.3183727_3183732dup, NC_000016.9:g.3183726_3183732dup, NC_000016.9:g.3183725_3183732dup, NC_000016.9:g.3183724_3183732dup, NC_000016.9:g.3183723_3183732dup, NC_000016.9:g.3183722_3183732dup, NC_000016.9:g.3183721_3183732dup, NC_000016.9:g.3183720_3183732dup, NC_000016.9:g.3183718_3183732dup

Select item 14912215754.

rs1491221575 [Homo sapiens]

Variant type:: INS
Alleles:: ->C [Show Flanks]
Chromosome:: 16:3133716 (GRCh38)
16:3183718 (GRCh37)
Canonical SPDI:: NC_000016.10:3133716::C
Gene:: ZNF213 (Varview), ZNF213-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
HGVS:: NC_000016.10:g.3133716_3133717insC, NC_000016.9:g.3183717_3183718insC

Select item 14909348705.

rs1490934870 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:3128613 (GRCh38)
16:3178614 (GRCh37)
Canonical SPDI:: NC_000016.10:3128612:C:T
Gene:: ZNF213-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.007187/21 (KOREAN)
C=0.5/1 (SGDP_PRJ)
HGVS:: NC_000016.10:g.3128613C>T, NC_000016.9:g.3178614C>T

Select item 14909130946.

rs1490913094 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A,C [Show Flanks]
Chromosome:: 16:3129014 (GRCh38)
16:3179015 (GRCh37)
Canonical SPDI:: NC_000016.10:3129013:T:A,NC_000016.10:3129013:T:C
Gene:: ZNF213-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
A=0.00003/8 (TOPMED)
HGVS:: NC_000016.10:g.3129014T>A, NC_000016.10:g.3129014T>C, NC_000016.9:g.3179015T>A, NC_000016.9:g.3179015T>C

Select item 14902296397.

rs1490229639 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 16:3127648 (GRCh38)
16:3177649 (GRCh37)
Canonical SPDI:: NC_000016.10:3127647:A:G
Gene:: ZNF213-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.3127648A>G, NC_000016.9:g.3177649A>G

Select item 14900399628.

rs1490039962 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 16:3133322 (GRCh38)
16:3183323 (GRCh37)
Canonical SPDI:: NC_000016.10:3133321:A:G
Gene:: ZNF213 (Varview), ZNF213-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000546/1 (Korea1K)
HGVS:: NC_000016.10:g.3133322A>G, NC_000016.9:g.3183323A>G

Select item 14899211489.

rs1489921148 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 16:3134298 (GRCh38)
16:3184299 (GRCh37)
Canonical SPDI:: NC_000016.10:3134297:G:A,NC_000016.10:3134297:G:T
Gene:: ZNF213 (Varview), ZNF213-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.3134298G>A, NC_000016.10:g.3134298G>T, NC_000016.9:g.3184299G>A, NC_000016.9:g.3184299G>T

Select item 148987607510.

rs1489876075 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 16:3133693 (GRCh38)
16:3183695 (GRCh37)
Canonical SPDI:: NC_000016.10:3133693:T:TT
Gene:: ZNF213 (Varview), ZNF213-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: TT=0.000071/1 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.3133694dup, NC_000016.9:g.3183695dup

Select item 148984787911.

rs1489847879 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 16:3128436 (GRCh38)
16:3178437 (GRCh37)
Canonical SPDI:: NC_000016.10:3128435:T:C
Gene:: ZNF213-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000016.10:g.3128436T>C, NC_000016.9:g.3178437T>C

Select item 148974131412.

rs1489741314 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 16:3128008 (GRCh38)
16:3178009 (GRCh37)
Canonical SPDI:: NC_000016.10:3128007:T:A
Gene:: ZNF213-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000023/6 (TOPMED)
A=0.00005/7 (GnomAD)
HGVS:: NC_000016.10:g.3128008T>A, NC_000016.9:g.3178009T>A

Select item 148965117513.

rs1489651175 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 16:3125881 (GRCh38)
16:3175882 (GRCh37)
Canonical SPDI:: NC_000016.10:3125880:C:T
Gene:: ZNF213-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.3125881C>T, NC_000016.9:g.3175882C>T, NR_110900.1:n.773G>A

Select item 148958401214.

rs1489584012 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 16:3131568 (GRCh38)
16:3181569 (GRCh37)
Canonical SPDI:: NC_000016.10:3131567:G:C
Gene:: ZNF213-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000022/3 (GnomAD)
HGVS:: NC_000016.10:g.3131568G>C, NC_000016.9:g.3181569G>C

Select item 148931964315.

rs1489319643 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 16:3134997 (GRCh38)
16:3184998 (GRCh37)
Canonical SPDI:: NC_000016.10:3134996:C:G
Gene:: ZNF213 (Varview), ZNF213-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
HGVS:: NC_000016.10:g.3134997C>G, NC_000016.9:g.3184998C>G

Select item 148927151516.

rs1489271515 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 16:3127145 (GRCh38)
16:3177146 (GRCh37)
Canonical SPDI:: NC_000016.10:3127144:G:C
Gene:: ZNF213-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000016.10:g.3127145G>C, NC_000016.9:g.3177146G>C

Select item 148916381617.

rs1489163816 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 16:3132100 (GRCh38)
16:3182101 (GRCh37)
Canonical SPDI:: NC_000016.10:3132099:C:A
Gene:: ZNF213-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000016.10:g.3132100C>A, NC_000016.9:g.3182101C>A, NR_110900.1:n.350G>T

Select item 148910420018.

rs1489104200 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 16:3135151 (GRCh38)
16:3185152 (GRCh37)
Canonical SPDI:: NC_000016.10:3135150:C:G
Gene:: ZNF213 (Varview), ZNF213-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,genic_upstream_transcript_variant,upstream_transcript_variant,non_coding_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000016.10:g.3135151C>G, NC_000016.9:g.3185152C>G, XM_011522652.4:c.-352C>G, XM_011522652.3:c.-352C>G, XM_011522652.2:c.-352C>G, XM_011522652.1:c.-352C>G, NM_004220.3:c.-352C>G, NM_004220.2:c.-352C>G, NR_104432.2:n.123C>G, NR_104432.1:n.96C>G, NM_001134655.2:c.-410C>G, NM_001134655.1:c.-410C>G

Select item 148903202619.

rs1489032026 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 16:3135123 (GRCh38)
16:3185124 (GRCh37)
Canonical SPDI:: NC_000016.10:3135122:C:A,NC_000016.10:3135122:C:G
Gene:: ZNF213 (Varview), ZNF213-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,genic_upstream_transcript_variant,upstream_transcript_variant,non_coding_transcript_variant,5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000016.10:g.3135123C>A, NC_000016.10:g.3135123C>G, NC_000016.9:g.3185124C>A, NC_000016.9:g.3185124C>G, XM_011522652.4:c.-380C>A, XM_011522652.4:c.-380C>G, XM_011522652.2:c.-380C>A, XM_011522652.2:c.-380C>G, XM_011522652.1:c.-380C>A, XM_011522652.1:c.-380C>G, NM_004220.3:c.-380C>A, NM_004220.3:c.-380C>G, NM_004220.2:c.-380C>A, NM_004220.2:c.-380C>G, NR_104432.2:n.95C>A, NR_104432.2:n.95C>G, NR_104432.1:n.68C>A, NR_104432.1:n.68C>G, NM_001134655.2:c.-438C>A, NM_001134655.2:c.-438C>G

Select item 148855102220.

rs1488551022 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 16:3130507 (GRCh38)
16:3180508 (GRCh37)
Canonical SPDI:: NC_000016.10:3130506:G:A
Gene:: ZNF213-AS1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.00003/8 (TOPMED)
HGVS:: NC_000016.10:g.3130507G>A, NC_000016.9:g.3180508G>A

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