SNP Links for Gene (Select 100507537) - SNP

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Select item 14913959141.

rs1491395914 [Homo sapiens]

Variant type:: INS
Alleles:: ->TTTAG,TTTTTTTTTTTGG [Show Flanks]
Chromosome:: 3:155290420 (GRCh38)
3:155008210 (GRCh37)
Canonical SPDI:: NC_000003.12:155290420::TTTAG,NC_000003.12:155290420::TTTTTTTTTTTGG
Gene:: STRIT1 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by cluster
MAF:: TTTAG=0.00006/1 (TOMMO)
HGVS:: NC_000003.12:g.155290420_155290421insTTTAG, NC_000003.12:g.155290420_155290421insTTTTTTTTTTTGG, NC_000003.11:g.155008209_155008210insTTTAG, NC_000003.11:g.155008209_155008210insTTTTTTTTTTTGG, NM_001352129.2:c.*430_*431insCTAAA, NM_001352129.2:c.*430_*431insCCAAAAAAAAAAA, NM_001352129.1:c.*430_*431insCTAAA, NM_001352129.1:c.*430_*431insCCAAAAAAAAAAA, NR_037902.1:n.606_607insCTAAA, NR_037902.1:n.606_607insCCAAAAAAAAAAA

Select item 14911221712.

rs1491122171 [Homo sapiens]

Variant type:: DELINS
Alleles:: GT>- [Show Flanks]
Chromosome:: 3:155290421 (GRCh38)
3:155008210 (GRCh37)
Canonical SPDI:: NC_000003.12:155290419:TGT:T
Gene:: STRIT1 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000003.12:g.155290421_155290422del, NC_000003.11:g.155008210_155008211del, NM_001352129.2:c.*430_*431del, NM_001352129.1:c.*430_*431del, NR_037902.1:n.606_607del

Select item 14904382463.

rs1490438246 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 3:155289739 (GRCh38)
3:155007528 (GRCh37)
Canonical SPDI:: NC_000003.12:155289738:T:C
Gene:: STRIT1 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.155289739T>C, NC_000003.11:g.155007528T>C

Select item 14902940654.

rs1490294065 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:155293054 (GRCh38)
3:155010843 (GRCh37)
Canonical SPDI:: NC_000003.12:155293053:A:G
Gene:: STRIT1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
G=0.000029/4 (GnomAD)
HGVS:: NC_000003.12:g.155293054A>G, NC_000003.11:g.155010843A>G

Select item 14902021445.

rs1490202144 [Homo sapiens]

Variant type:: DELINS
Alleles:: AGA>- [Show Flanks]
Chromosome:: 3:155295415 (GRCh38)
3:155013204 (GRCh37)
Canonical SPDI:: NC_000003.12:155295407:AAGAAGAAGA:AAGAAGA
Gene:: STRIT1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAGAAGA=0./0 (ALFA)
-=0.000049/13 (TOPMED)
-=0.000078/11 (GnomAD)
HGVS:: NC_000003.12:g.155295409AGA[2], NC_000003.11:g.155013198AGA[2]

Select item 14883214006.

rs1488321400 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 3:155290440 (GRCh38)
3:155008229 (GRCh37)
Canonical SPDI:: NC_000003.12:155290439:C:A
Gene:: STRIT1 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000061/1 (ALFA)
A=0.000029/3 (GnomAD)
A=0.000225/1 (Estonian)
HGVS:: NC_000003.12:g.155290440C>A, NC_000003.11:g.155008229C>A, NM_001352129.2:c.*411G>T, NM_001352129.1:c.*411G>T, NR_037902.1:n.587G>T

Select item 14879217287.

rs1487921728 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,C,T [Show Flanks]
Chromosome:: 3:155293644 (GRCh38)
3:155011433 (GRCh37)
Canonical SPDI:: NC_000003.12:155293643:G:A,NC_000003.12:155293643:G:C,NC_000003.12:155293643:G:T
Gene:: STRIT1 (Varview)
Functional Consequence:: 5_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
T=0.000014/2 (GnomAD)
A=0.000156/1 (1000Genomes)
HGVS:: NC_000003.12:g.155293644G>A, NC_000003.12:g.155293644G>C, NC_000003.12:g.155293644G>T, NC_000003.11:g.155011433G>A, NC_000003.11:g.155011433G>C, NC_000003.11:g.155011433G>T, NM_001352129.2:c.-12C>T, NM_001352129.2:c.-12C>G, NM_001352129.2:c.-12C>A, NM_001352129.1:c.-12C>T, NM_001352129.1:c.-12C>G, NM_001352129.1:c.-12C>A, NR_037902.1:n.57C>T, NR_037902.1:n.57C>G, NR_037902.1:n.57C>A

Select item 14878328358.

rs1487832835 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 3:155290351 (GRCh38)
3:155008140 (GRCh37)
Canonical SPDI:: NC_000003.12:155290350:G:A
Gene:: STRIT1 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000035/1 (TOMMO)
HGVS:: NC_000003.12:g.155290351G>A, NC_000003.11:g.155008140G>A, NM_001352129.2:c.*500C>T, NM_001352129.1:c.*500C>T, NR_037902.1:n.676C>T

Select item 14869035679.

rs1486903567 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:155293482 (GRCh38)
3:155011271 (GRCh37)
Canonical SPDI:: NC_000003.12:155293481:C:T
Gene:: STRIT1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000142/2 (ALFA)
T=0.000042/11 (TOPMED)
T=0.000043/6 (GnomAD)
HGVS:: NC_000003.12:g.155293482C>T, NC_000003.11:g.155011271C>T

Select item 148517457110.

rs1485174571 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:155294237 (GRCh38)
3:155012026 (GRCh37)
Canonical SPDI:: NC_000003.12:155294236:C:T
Gene:: STRIT1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.155294237C>T, NC_000003.11:g.155012026C>T

Select item 148503311711.

rs1485033117 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 3:155293281 (GRCh38)
3:155011070 (GRCh37)
Canonical SPDI:: NC_000003.12:155293280:C:T
Gene:: STRIT1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.155293281C>T, NC_000003.11:g.155011070C>T

Select item 148493147912.

rs1484931479 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:155293117 (GRCh38)
3:155010906 (GRCh37)
Canonical SPDI:: NC_000003.12:155293116:A:G
Gene:: STRIT1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.155293117A>G, NC_000003.11:g.155010906A>G

Select item 148469717713.

rs1484697177 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:155294782 (GRCh38)
3:155012571 (GRCh37)
Canonical SPDI:: NC_000003.12:155294781:A:G
Gene:: STRIT1 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
HGVS:: NC_000003.12:g.155294782A>G, NC_000003.11:g.155012571A>G

Select item 148365197514.

rs1483651975 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 3:155292144 (GRCh38)
3:155009933 (GRCh37)
Canonical SPDI:: NC_000003.12:155292143:T:C
Gene:: STRIT1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000003.12:g.155292144T>C, NC_000003.11:g.155009933T>C

Select item 148216239515.

rs1482162395 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G,T [Show Flanks]
Chromosome:: 3:155290425 (GRCh38)
3:155008214 (GRCh37)
Canonical SPDI:: NC_000003.12:155290424:A:C,NC_000003.12:155290424:A:G,NC_000003.12:155290424:A:T
Gene:: STRIT1 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000003.12:g.155290425A>C, NC_000003.12:g.155290425A>G, NC_000003.12:g.155290425A>T, NC_000003.11:g.155008214A>C, NC_000003.11:g.155008214A>G, NC_000003.11:g.155008214A>T, NM_001352129.2:c.*426T>G, NM_001352129.2:c.*426T>C, NM_001352129.2:c.*426T>A, NM_001352129.1:c.*426T>G, NM_001352129.1:c.*426T>C, NM_001352129.1:c.*426T>A, NR_037902.1:n.602T>G, NR_037902.1:n.602T>C, NR_037902.1:n.602T>A

Select item 148211448216.

rs1482114482 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 3:155291528 (GRCh38)
3:155009317 (GRCh37)
Canonical SPDI:: NC_000003.12:155291527:G:T
Gene:: STRIT1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0.000071/1 (ALFA)
T=0.000008/2 (TOPMED)
HGVS:: NC_000003.12:g.155291528G>T, NC_000003.11:g.155009317G>T

Select item 148210231017.

rs1482102310 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 3:155290007 (GRCh38)
3:155007796 (GRCh37)
Canonical SPDI:: NC_000003.12:155290006:A:G
Gene:: STRIT1 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000008/2 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000003.12:g.155290007A>G, NC_000003.11:g.155007796A>G

Select item 148163296118.

rs1481632961 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G [Show Flanks]
Chromosome:: 3:155292775 (GRCh38)
3:155010564 (GRCh37)
Canonical SPDI:: NC_000003.12:155292774:C:A,NC_000003.12:155292774:C:G
Gene:: STRIT1 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
A=0.000014/2 (GnomAD)
HGVS:: NC_000003.12:g.155292775C>A, NC_000003.12:g.155292775C>G, NC_000003.11:g.155010564C>A, NC_000003.11:g.155010564C>G

Select item 148127983419.

rs1481279834 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 3:155290301 (GRCh38)
3:155008090 (GRCh37)
Canonical SPDI:: NC_000003.12:155290300:T:A
Gene:: STRIT1 (Varview)
Functional Consequence:: 3_prime_UTR_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000224/1 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000223/1 (Estonian)
HGVS:: NC_000003.12:g.155290301T>A, NC_000003.11:g.155008090T>A, NM_001352129.2:c.*550A>T, NM_001352129.1:c.*550A>T, NR_037902.1:n.726A>T

Select item 148064309120.

rs1480643091 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 3:155289841 (GRCh38)
3:155007630 (GRCh37)
Canonical SPDI:: NC_000003.12:155289840:T:C
Gene:: STRIT1 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.00004/1 (TOMMO)
HGVS:: NC_000003.12:g.155289841T>C, NC_000003.11:g.155007630T>C

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