Links from Gene
Items: 1 to 20 of 27060
1.
rs1491571657 [Homo sapiens]- Variant type:
- DEL
- Alleles:
- CC>-
[Show Flanks]
- Chromosome:
- 13:36184459
(GRCh38)
13:36758596
(GRCh37)
- Canonical SPDI:
- NC_000013.11:36184458:CC:
- Gene:
- SOHLH2 (Varview), CCDC169-SOHLH2 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
-=0./0
(
ALFA)
-=0.00003/3
(GnomAD)
-=0.00259/10
(ALSPAC)
-=0.00324/12
(TWINSUK)
- HGVS:
3.
rs1491545970 has merged into rs35290959 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- TTTTTTT>-,TTT,TTTT,TTTTT,TTTTTT,TTTTTTTT,TTTTTTTTT,TTTTTTTTTTTT
[Show Flanks]
- Chromosome:
- 13:36225216
(GRCh38)
13:36799353
(GRCh37)
- Canonical SPDI:
- NC_000013.11:36225209:TTTTTTTTTTTTT:TTTTTT,NC_000013.11:36225209:TTTTTTTTTTTTT:TTTTTTTTT,NC_000013.11:36225209:TTTTTTTTTTTTT:TTTTTTTTTT,NC_000013.11:36225209:TTTTTTTTTTTTT:TTTTTTTTTTT,NC_000013.11:36225209:TTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000013.11:36225209:TTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000013.11:36225209:TTTTTTTTTTTTT:TTTTTTTTTTTTTTT,NC_000013.11:36225209:TTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT
- Gene:
- CCDC169 (Varview), CCDC169-SOHLH2 (Varview)
- Functional Consequence:
- genic_downstream_transcript_variant,intron_variant,3_prime_UTR_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
TTTTTTTTT=0./0
(
ALFA)
TT=0.373/1098
(1000Genomes)
- HGVS:
NC_000013.11:g.36225216_36225222del, NC_000013.11:g.36225219_36225222del, NC_000013.11:g.36225220_36225222del, NC_000013.11:g.36225221_36225222del, NC_000013.11:g.36225222del, NC_000013.11:g.36225222dup, NC_000013.11:g.36225221_36225222dup, NC_000013.11:g.36225218_36225222dup, NC_000013.10:g.36799353_36799359del, NC_000013.10:g.36799356_36799359del, NC_000013.10:g.36799357_36799359del, NC_000013.10:g.36799358_36799359del, NC_000013.10:g.36799359del, NC_000013.10:g.36799359dup, NC_000013.10:g.36799358_36799359dup, NC_000013.10:g.36799355_36799359dup, NM_001144982.3:c.*1985_*1991del, NM_001144982.3:c.*1988_*1991del, NM_001144982.3:c.*1989_*1991del, NM_001144982.3:c.*1990_*1991del, NM_001144982.3:c.*1991del, NM_001144982.3:c.*1991dup, NM_001144982.3:c.*1990_*1991dup, NM_001144982.3:c.*1987_*1991dup, NM_001144983.3:c.*1985_*1991del, NM_001144983.3:c.*1988_*1991del, NM_001144983.3:c.*1989_*1991del, NM_001144983.3:c.*1990_*1991del, NM_001144983.3:c.*1991del, NM_001144983.3:c.*1991dup, NM_001144983.3:c.*1990_*1991dup, NM_001144983.3:c.*1987_*1991dup, NM_001144984.3:c.*1985_*1991del, NM_001144984.3:c.*1988_*1991del, NM_001144984.3:c.*1989_*1991del, NM_001144984.3:c.*1990_*1991del, NM_001144984.3:c.*1991del, NM_001144984.3:c.*1991dup, NM_001144984.3:c.*1990_*1991dup, NM_001144984.3:c.*1987_*1991dup, NM_001198908.2:c.*1985_*1991del, NM_001198908.2:c.*1988_*1991del, NM_001198908.2:c.*1989_*1991del, NM_001198908.2:c.*1990_*1991del, NM_001198908.2:c.*1991del, NM_001198908.2:c.*1991dup, NM_001198908.2:c.*1990_*1991dup, NM_001198908.2:c.*1987_*1991dup
4.
rs1491440722 [Homo sapiens]- Variant type:
- DEL
- Alleles:
- AA>-
[Show Flanks]
- Chromosome:
- 13:36196126
(GRCh38)
13:36770263
(GRCh37)
- Canonical SPDI:
- NC_000013.11:36196125:AA:
- Gene:
- SOHLH2 (Varview), CCDC169-SOHLH2 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
-=0./0
(
ALFA)
-=0.00079/98
(GnomAD)
-=0.00269/45
(TOMMO)
-=0.004913/9
(Korea1K)
- HGVS:
6.
rs1491388056 has merged into rs1368470201 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- TTT>-,T,TT,TTTT,TTTTT,TTTTTT,TTTTTTT
[Show Flanks]
- Chromosome:
- 13:36254292
(GRCh38)
13:36828429
(GRCh37)
- Canonical SPDI:
- NC_000013.11:36254275:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000013.11:36254275:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000013.11:36254275:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000013.11:36254275:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTT,NC_000013.11:36254275:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000013.11:36254275:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:36254275:TTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT
- Gene:
- CCDC169 (Varview), CCDC169-SOHLH2 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
TTTTTTTTTTTTTTTTTTTT=0./0
(
ALFA)
- HGVS:
NC_000013.11:g.36254292_36254294del, NC_000013.11:g.36254293_36254294del, NC_000013.11:g.36254294del, NC_000013.11:g.36254294dup, NC_000013.11:g.36254293_36254294dup, NC_000013.11:g.36254292_36254294dup, NC_000013.11:g.36254291_36254294dup, NC_000013.10:g.36828429_36828431del, NC_000013.10:g.36828430_36828431del, NC_000013.10:g.36828431del, NC_000013.10:g.36828431dup, NC_000013.10:g.36828430_36828431dup, NC_000013.10:g.36828429_36828431dup, NC_000013.10:g.36828428_36828431dup
8.
rs1491320518 [Homo sapiens]- Variant type:
- INS
- Alleles:
- ->GGTC
[Show Flanks]
- Chromosome:
- 13:36216341
(GRCh38)
13:36790479
(GRCh37)
- Canonical SPDI:
- NC_000013.11:36216341::GGTC
- Gene:
- SOHLH2 (Varview), CCDC169-SOHLH2 (Varview)
- Functional Consequence:
- intron_variant,2KB_upstream_variant,upstream_transcript_variant
- Validated:
- by frequency,by alfa
- MAF:
GGTC=0.000927/11
(
ALFA)
GGTC=0.000138/16
(GnomAD)
- HGVS:
9.
rs1491302635 has merged into rs869169397 [Homo sapiens]- Variant type:
- DEL
- Alleles:
- CT>-
[Show Flanks]
- Chromosome:
- 13:36184460
(GRCh38)
13:36758597
(GRCh37)
- Canonical SPDI:
- NC_000013.11:36184459:CT:
- Gene:
- SOHLH2 (Varview), CCDC169-SOHLH2 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
-=0./0
(
ALFA)
-=0.00032/24
(GnomAD)
- HGVS:
10.
rs1491282746 has merged into rs3083971 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- TTTTTTTTT>-,T,TTT,TTTTT,TTTTTT,TTTTTTT,TTTTTTTT,TTTTTTTTTT,TTTTTTTTTTT,TTTTTTTTTTTT,TTTTTTTTTTTTT,TTTTTTTTTTTTTT,TTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTT,TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
[Show Flanks]
- Chromosome:
- 13:36274880
(GRCh38)
13:36849017
(GRCh37)
- Canonical SPDI:
- NC_000013.11:36274868:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTT,NC_000013.11:36274868:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000013.11:36274868:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000013.11:36274868:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTT,NC_000013.11:36274868:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTT,NC_000013.11:36274868:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTT,NC_000013.11:36274868:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTT,NC_000013.11:36274868:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTT,NC_000013.11:36274868:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:36274868:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:36274868:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:36274868:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:36274868:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:36274868:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:36274868:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:36274868:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:36274868:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:36274868:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT,NC_000013.11:36274868:TTTTTTTTTTTTTTTTTTTT:TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
- Gene:
- CCDC169 (Varview), CCDC169-SOHLH2 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
- HGVS:
NC_000013.11:g.36274880_36274888del, NC_000013.11:g.36274881_36274888del, NC_000013.11:g.36274883_36274888del, NC_000013.11:g.36274885_36274888del, NC_000013.11:g.36274886_36274888del, NC_000013.11:g.36274887_36274888del, NC_000013.11:g.36274888del, NC_000013.11:g.36274888dup, NC_000013.11:g.36274887_36274888dup, NC_000013.11:g.36274886_36274888dup, NC_000013.11:g.36274885_36274888dup, NC_000013.11:g.36274884_36274888dup, NC_000013.11:g.36274883_36274888dup, NC_000013.11:g.36274882_36274888dup, NC_000013.11:g.36274881_36274888dup, NC_000013.11:g.36274880_36274888dup, NC_000013.11:g.36274879_36274888dup, NC_000013.11:g.36274871_36274888dup, NC_000013.11:g.36274888_36274889insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT, NC_000013.10:g.36849017_36849025del, NC_000013.10:g.36849018_36849025del, NC_000013.10:g.36849020_36849025del, NC_000013.10:g.36849022_36849025del, NC_000013.10:g.36849023_36849025del, NC_000013.10:g.36849024_36849025del, NC_000013.10:g.36849025del, NC_000013.10:g.36849025dup, NC_000013.10:g.36849024_36849025dup, NC_000013.10:g.36849023_36849025dup, NC_000013.10:g.36849022_36849025dup, NC_000013.10:g.36849021_36849025dup, NC_000013.10:g.36849020_36849025dup, NC_000013.10:g.36849019_36849025dup, NC_000013.10:g.36849018_36849025dup, NC_000013.10:g.36849017_36849025dup, NC_000013.10:g.36849016_36849025dup, NC_000013.10:g.36849008_36849025dup, NC_000013.10:g.36849025_36849026insTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
12.
rs1491225221 has merged into rs748848806 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- TTTT>-,T,TT,TTT,TTTTT,TTTTTT
[Show Flanks]
- Chromosome:
- 13:36178830
(GRCh38)
13:36752967
(GRCh37)
- Canonical SPDI:
- NC_000013.11:36178820:TTTTTTTTTTTTT:TTTTTTTTT,NC_000013.11:36178820:TTTTTTTTTTTTT:TTTTTTTTTT,NC_000013.11:36178820:TTTTTTTTTTTTT:TTTTTTTTTTT,NC_000013.11:36178820:TTTTTTTTTTTTT:TTTTTTTTTTTT,NC_000013.11:36178820:TTTTTTTTTTTTT:TTTTTTTTTTTTTT,NC_000013.11:36178820:TTTTTTTTTTTTT:TTTTTTTTTTTTTTT
- Gene:
- SOHLH2 (Varview), CCDC169-SOHLH2 (Varview)
- Functional Consequence:
- intron_variant,genic_downstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
TTTTTTTTTT=0./0
(
ALFA)
T=0.175/7
(GENOME_DK)
- HGVS:
NC_000013.11:g.36178830_36178833del, NC_000013.11:g.36178831_36178833del, NC_000013.11:g.36178832_36178833del, NC_000013.11:g.36178833del, NC_000013.11:g.36178833dup, NC_000013.11:g.36178832_36178833dup, NC_000013.10:g.36752967_36752970del, NC_000013.10:g.36752968_36752970del, NC_000013.10:g.36752969_36752970del, NC_000013.10:g.36752970del, NC_000013.10:g.36752970dup, NC_000013.10:g.36752969_36752970dup, NG_033786.1:g.40792_40795del, NG_033786.1:g.40793_40795del, NG_033786.1:g.40794_40795del, NG_033786.1:g.40795del, NG_033786.1:g.40795dup, NG_033786.1:g.40794_40795dup
13.
rs1491187295 [Homo sapiens]- Variant type:
- INS
- Alleles:
- ->G
[Show Flanks]
- Chromosome:
- 13:36178821
(GRCh38)
13:36752959
(GRCh37)
- Canonical SPDI:
- NC_000013.11:36178821::G
- Gene:
- SOHLH2 (Varview), CCDC169-SOHLH2 (Varview)
- Functional Consequence:
- genic_downstream_transcript_variant,intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
G=0.000071/1
(
ALFA)
G=0.000034/9
(TOPMED)
G=0.000041/4
(GnomAD)
- HGVS:
14.
rs1491163616 has merged into rs71084416 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- AAAAA>-,A,AA,AAA,AAAA,AAAAAA,AAAAAAA,AAAAAAAAAAA,AAAAAAAAAAAAA
[Show Flanks]
- Chromosome:
- 13:36277957
(GRCh38)
13:36852094
(GRCh37)
- Canonical SPDI:
- NC_000013.11:36277944:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000013.11:36277944:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAA,NC_000013.11:36277944:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000013.11:36277944:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000013.11:36277944:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000013.11:36277944:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAA,NC_000013.11:36277944:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAA,NC_000013.11:36277944:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAA,NC_000013.11:36277944:AAAAAAAAAAAAAAAAA:AAAAAAAAAAAAAAAAAAAAAAAAA
- Gene:
- CCDC169 (Varview), CCDC169-SOHLH2 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
AAAAAAAAAAAAAAAAAAA=0./0
(
ALFA)
- HGVS:
NC_000013.11:g.36277957_36277961del, NC_000013.11:g.36277958_36277961del, NC_000013.11:g.36277959_36277961del, NC_000013.11:g.36277960_36277961del, NC_000013.11:g.36277961del, NC_000013.11:g.36277961dup, NC_000013.11:g.36277960_36277961dup, NC_000013.11:g.36277956_36277961dup, NC_000013.11:g.36277954_36277961dup, NC_000013.10:g.36852094_36852098del, NC_000013.10:g.36852095_36852098del, NC_000013.10:g.36852096_36852098del, NC_000013.10:g.36852097_36852098del, NC_000013.10:g.36852098del, NC_000013.10:g.36852098dup, NC_000013.10:g.36852097_36852098dup, NC_000013.10:g.36852093_36852098dup, NC_000013.10:g.36852091_36852098dup
16.
rs1491142899 [Homo sapiens]- Variant type:
- DEL
- Alleles:
- CT>-
[Show Flanks]
- Chromosome:
- 13:36254275
(GRCh38)
13:36828412
(GRCh37)
- Canonical SPDI:
- NC_000013.11:36254274:CT:
- Gene:
- CCDC169 (Varview), CCDC169-SOHLH2 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa
- MAF:
-=0./0
(
ALFA)
-=0.000008/2
(TOPMED)
- HGVS:
17.
rs1491081177 [Homo sapiens]- Variant type:
- DELINS
- Alleles:
- ->TTTTTTTTTTTTTTTTTTTTCT
[Show Flanks]
- Chromosome:
- 13:36203970
(GRCh38)
13:36778108
(GRCh37)
- Canonical SPDI:
- NC_000013.11:36203970:T:TTTTTTTTTTTTTTTTTTTTTCT
- Gene:
- SOHLH2 (Varview), CCDC169-SOHLH2 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa
- MAF:
TTTTTTTTTTTTTTTTTTTTTCT=0.0002/1
(
ALFA)
- HGVS:
18.
rs1490964024 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- C>T
[Show Flanks]
- Chromosome:
- 13:36283006
(GRCh38)
13:36857143
(GRCh37)
- Canonical SPDI:
- NC_000013.11:36283005:C:T
- Gene:
- CCDC169 (Varview), CCDC169-SOHLH2 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa
- MAF:
T=0.000071/1
(
ALFA)
T=0.000007/1
(GnomAD)
- HGVS:
19.
rs1490942870 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- T>C
[Show Flanks]
- Chromosome:
- 13:36280650
(GRCh38)
13:36854787
(GRCh37)
- Canonical SPDI:
- NC_000013.11:36280649:T:C
- Gene:
- CCDC169 (Varview), CCDC169-SOHLH2 (Varview)
- Functional Consequence:
- intron_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
C=0./0
(
ALFA)
C=0.000008/2
(TOPMED)
C=0.000021/3
(GnomAD)
- HGVS:
20.
rs1490936305 [Homo sapiens]- Variant type:
- SNV
- Alleles:
- G>A
[Show Flanks]
- Chromosome:
- 13:36298749
(GRCh38)
13:36872886
(GRCh37)
- Canonical SPDI:
- NC_000013.11:36298748:G:A
- Gene:
- CCDC169 (Varview), CCDC169-SOHLH2 (Varview)
- Functional Consequence:
- 2KB_upstream_variant,upstream_transcript_variant
- Validated:
- by frequency,by alfa,by cluster
- MAF:
A=0./0
(
ALFA)
A=0.000004/1
(TOPMED)
A=0.000007/1
(GnomAD)
- HGVS: