SNP Links for Gene (Select 100616384) - SNP

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Links from Gene

Items: 1 to 20 of 440

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Select item 14877353721.

rs1487735372 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CAGA [Show Flanks]
Chromosome:: 1:116560933 (GRCh38)
1:117103556 (GRCh37)
Canonical SPDI:: NC_000001.11:116560933:CAGA:CAGACAGA
Gene:: CD58 (Varview), MIR548AC (Varview), LOC105378925 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CAGACAGA=0./0 (ALFA)
CAGA=0.000004/1 (TOPMED)
CAGA=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.116560934_116560937dup, NC_000001.10:g.117103556_117103559dup, XR_947739.2:n.10757_10760dup

Select item 14858335062.

rs1485833506 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:116561487 (GRCh38)
1:117104109 (GRCh37)
Canonical SPDI:: NC_000001.11:116561486:G:A
Gene:: CD58 (Varview), MIR548AC (Varview), LOC105378925 (Varview)
Functional Consequence:: intron_variant,500B_downstream_variant,upstream_transcript_variant,downstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.116561487G>A, NC_000001.10:g.117104109G>A

Select item 14841617733.

rs1484161773 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:116560276 (GRCh38)
1:117102898 (GRCh37)
Canonical SPDI:: NC_000001.11:116560275:T:C
Gene:: CD58 (Varview), MIR548AC (Varview), LOC105378925 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000015/4 (TOPMED)
C=0.000029/4 (GnomAD)
HGVS:: NC_000001.11:g.116560276T>C, NC_000001.10:g.117102898T>C, XR_947739.2:n.10099T>C

Select item 14839705284.

rs1483970528 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 1:116560709 (GRCh38)
1:117103331 (GRCh37)
Canonical SPDI:: NC_000001.11:116560708:C:A
Gene:: CD58 (Varview), MIR548AC (Varview), LOC105378925 (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000011/3 (TOPMED)
HGVS:: NC_000001.11:g.116560709C>A, NC_000001.10:g.117103331C>A, XR_947739.2:n.10532C>A

Select item 14830930825.

rs1483093082 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:116560924 (GRCh38)
1:117103546 (GRCh37)
Canonical SPDI:: NC_000001.11:116560923:T:C
Gene:: CD58 (Varview), MIR548AC (Varview), LOC105378925 (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.116560924T>C, NC_000001.10:g.117103546T>C, XR_947739.2:n.10747T>C

Select item 14820141466.

rs1482014146 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:116561977 (GRCh38)
1:117104599 (GRCh37)
Canonical SPDI:: NC_000001.11:116561976:T:C
Gene:: CD58 (Varview), MIR548AC (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.116561977T>C, NC_000001.10:g.117104599T>C

Select item 14811677107.

rs1481167710 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 1:116560432 (GRCh38)
1:117103054 (GRCh37)
Canonical SPDI:: NC_000001.11:116560431:C:A
Gene:: CD58 (Varview), MIR548AC (Varview), LOC105378925 (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.116560432C>A, NC_000001.10:g.117103054C>A, XR_947739.2:n.10255C>A

Select item 14782560888.

rs1478256088 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:116561842 (GRCh38)
1:117104464 (GRCh37)
Canonical SPDI:: NC_000001.11:116561841:T:C
Gene:: CD58 (Varview), MIR548AC (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
HGVS:: NC_000001.11:g.116561842T>C, NC_000001.10:g.117104464T>C

Select item 14774955989.

rs1477495598 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 1:116561180 (GRCh38)
1:117103802 (GRCh37)
Canonical SPDI:: NC_000001.11:116561179:C:A
Gene:: CD58 (Varview), MIR548AC (Varview), LOC105378925 (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,intron_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.116561180C>A, NC_000001.10:g.117103802C>A, XR_947739.2:n.11003C>A

Select item 147693473710.

rs1476934737 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:116559674 (GRCh38)
1:117102296 (GRCh37)
Canonical SPDI:: NC_000001.11:116559673:G:A
Gene:: CD58 (Varview), MIR548AC (Varview), LOC105378925 (Varview)
Functional Consequence:: non_coding_transcript_variant,downstream_transcript_variant,intron_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000066/1 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000223/1 (Estonian)
HGVS:: NC_000001.11:g.116559674G>A, NC_000001.10:g.117102296G>A, XR_947739.2:n.9497G>A

Select item 147542191211.

rs1475421912 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A [Show Flanks]
Chromosome:: 1:116561217 (GRCh38)
1:117103840 (GRCh37)
Canonical SPDI:: NC_000001.11:116561217:AAAA:AAAAA
Gene:: CD58 (Varview), MIR548AC (Varview), LOC105378925 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,500B_downstream_variant,downstream_transcript_variant,intron_variant
Validated:: by frequency
MAF:: A=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.116561221dup, NC_000001.10:g.117103843dup

Select item 147509075312.

rs1475090753 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 1:116559701 (GRCh38)
1:117102323 (GRCh37)
Canonical SPDI:: NC_000001.11:116559700:C:G
Gene:: CD58 (Varview), MIR548AC (Varview), LOC105378925 (Varview)
Functional Consequence:: non_coding_transcript_variant,downstream_transcript_variant,500B_downstream_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.116559701C>G, NC_000001.10:g.117102323C>G, XR_947739.2:n.9524C>G

Select item 147484814813.

rs1474848148 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 1:116561201 (GRCh38)
1:117103823 (GRCh37)
Canonical SPDI:: NC_000001.11:116561200:G:T
Gene:: CD58 (Varview), MIR548AC (Varview), LOC105378925 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,500B_downstream_variant,downstream_transcript_variant,intron_variant
Validated:: by frequency
MAF:: T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.116561201G>T, NC_000001.10:g.117103823G>T

Select item 147422543714.

rs1474225437 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:116559913 (GRCh38)
1:117102535 (GRCh37)
Canonical SPDI:: NC_000001.11:116559912:T:C
Gene:: CD58 (Varview), MIR548AC (Varview), LOC105378925 (Varview)
Functional Consequence:: non_coding_transcript_variant,downstream_transcript_variant,500B_downstream_variant,intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.116559913T>C, NC_000001.10:g.117102535T>C, XR_947739.2:n.9736T>C

Select item 147364192015.

rs1473641920 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 1:116560345 (GRCh38)
1:117102967 (GRCh37)
Canonical SPDI:: NC_000001.11:116560344:C:T
Gene:: CD58 (Varview), MIR548AC (Varview), LOC105378925 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000014/2 (GnomAD)
T=0.000015/4 (TOPMED)
HGVS:: NC_000001.11:g.116560345C>T, NC_000001.10:g.117102967C>T, XR_947739.2:n.10168C>T

Select item 147272656116.

rs1472726561 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 1:116561500 (GRCh38)
1:117104122 (GRCh37)
Canonical SPDI:: NC_000001.11:116561499:C:A
Gene:: CD58 (Varview), MIR548AC (Varview), LOC105378925 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,500B_downstream_variant,downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.116561500C>A, NC_000001.10:g.117104122C>A

Select item 146427360917.

rs1464273609 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 1:116560382 (GRCh38)
1:117103004 (GRCh37)
Canonical SPDI:: NC_000001.11:116560381:A:C
Gene:: CD58 (Varview), MIR548AC (Varview), LOC105378925 (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.116560382A>C, NC_000001.10:g.117103004A>C, XR_947739.2:n.10205A>C

Select item 146122539918.

rs1461225399 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:116559942 (GRCh38)
1:117102564 (GRCh37)
Canonical SPDI:: NC_000001.11:116559941:G:A
Gene:: CD58 (Varview), MIR548AC (Varview), LOC105378925 (Varview)
Functional Consequence:: non_coding_transcript_variant,500B_downstream_variant,downstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.116559942G>A, NC_000001.10:g.117102564G>A, XR_947739.2:n.9765G>A

Select item 145988595919.

rs1459885959 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 1:116560541 (GRCh38)
1:117103163 (GRCh37)
Canonical SPDI:: NC_000001.11:116560540:T:A
Gene:: CD58 (Varview), MIR548AC (Varview), LOC105378925 (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000015/4 (TOPMED)
HGVS:: NC_000001.11:g.116560541T>A, NC_000001.10:g.117103163T>A, XR_947739.2:n.10364T>A

Select item 145938315820.

rs1459383158 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:116561033 (GRCh38)
1:117103655 (GRCh37)
Canonical SPDI:: NC_000001.11:116561032:G:A
Gene:: CD58 (Varview), MIR548AC (Varview), LOC105378925 (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.116561033G>A, NC_000001.10:g.117103655G>A, XR_947739.2:n.10856G>A

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