SNP Links for Gene (Select 100652856) - SNP

Links from Gene

Items: 1 to 20 of 5504

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Select item 14915155951.

rs1491515595 [Homo sapiens]

Variant type:: INS
Alleles:: ->CTTA [Show Flanks]
Chromosome:: 13:18918777 (GRCh38)
13:19492918 (GRCh37)
Canonical SPDI:: NC_000013.11:18918777::CTTA
Gene:: LINC00408 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: CTTA=0.00007/1 (ALFA)
CTTA=0.00005/2 (GnomAD)
HGVS:: NC_000013.11:g.18918777_18918778insCTTA, NC_000013.10:g.19492917_19492918insCTTA

Select item 14914459632.

rs1491445963 [Homo sapiens]

Variant type:: INS
Alleles:: ->T,TC,TGTT [Show Flanks]
Chromosome:: 13:18916558 (GRCh38)
13:19490699 (GRCh37)
Canonical SPDI:: NC_000013.11:18916558::T,NC_000013.11:18916558::TC,NC_000013.11:18916558::TGTT
Gene:: LINC00408 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TGTT=0./0 (ALFA)
T=0.00363/6 (Korea1K)
T=0.01012/144 (TOMMO)
HGVS:: NC_000013.11:g.18916558_18916559insT, NC_000013.11:g.18916558_18916559insTC, NC_000013.11:g.18916558_18916559insTGTT, NC_000013.10:g.19490698_19490699insT, NC_000013.10:g.19490698_19490699insTC, NC_000013.10:g.19490698_19490699insTGTT

Select item 14913684523.

rs1491368452 [Homo sapiens]

Variant type:: DEL
Alleles:: AG>- [Show Flanks]
Chromosome:: 13:18907554 (GRCh38)
13:19481694 (GRCh37)
Canonical SPDI:: NC_000013.11:18907553:AG:
Gene:: LINC00408 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0./0 (ALFA)
-=0.000034/9 (TOPMED)
-=0.00009/2 (GnomAD)
HGVS:: NC_000013.11:g.18907554_18907555del, NC_000013.10:g.19481694_19481695del

Select item 14912215344.

rs1491221534 has merged into rs909574117 [Homo sapiens]

Variant type:: DELINS
Alleles:: GTGTGTGTGTGTGTGTGTGTGT>-,GT,GTGTGT,GTGTGTGTGT,GTGTGTGTGTGT,GTGTGTGTGTGTGT,GTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGTGTGTGTGT [Show Flanks]
Chromosome:: 13:18916572 (GRCh38)
13:19490712 (GRCh37)
Canonical SPDI:: NC_000013.11:18916559:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGT,NC_000013.11:18916559:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGT,NC_000013.11:18916559:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGT,NC_000013.11:18916559:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGT,NC_000013.11:18916559:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGTGT,NC_000013.11:18916559:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000013.11:18916559:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000013.11:18916559:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000013.11:18916559:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000013.11:18916559:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,NC_000013.11:18916559:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT:GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
Gene:: LINC00408 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GTGTGTGTGTGTGT=0./0 (ALFA)
HGVS:: NC_000013.11:g.18916560GT[6], NC_000013.11:g.18916560GT[7], NC_000013.11:g.18916560GT[9], NC_000013.11:g.18916560GT[11], NC_000013.11:g.18916560GT[12], NC_000013.11:g.18916560GT[13], NC_000013.11:g.18916560GT[14], NC_000013.11:g.18916560GT[15], NC_000013.11:g.18916560GT[16], NC_000013.11:g.18916560GT[18], NC_000013.11:g.18916560GT[19], NC_000013.10:g.19490700GT[6], NC_000013.10:g.19490700GT[7], NC_000013.10:g.19490700GT[9], NC_000013.10:g.19490700GT[11], NC_000013.10:g.19490700GT[12], NC_000013.10:g.19490700GT[13], NC_000013.10:g.19490700GT[14], NC_000013.10:g.19490700GT[15], NC_000013.10:g.19490700GT[16], NC_000013.10:g.19490700GT[18], NC_000013.10:g.19490700GT[19]

Select item 14911693955.

rs1491169395 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->AT [Show Flanks]
Chromosome:: 13:18916560 (GRCh38)
13:19490701 (GRCh37)
Canonical SPDI:: NC_000013.11:18916560:T:TAT
Gene:: LINC00408 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: TAT=0./0 (ALFA)
TA=0.00008/1 (GnomAD)
HGVS:: NC_000013.11:g.18916561_18916562insAT, NC_000013.10:g.19490701_19490702insAT

Select item 14911359146.

rs1491135914 [Homo sapiens]

Variant type:: DELINS
Alleles:: GT>- [Show Flanks]
Chromosome:: 13:18909426 (GRCh38)
13:19483566 (GRCh37)
Canonical SPDI:: NC_000013.11:18909424:TGT:T
Gene:: LINC00408 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.00143/17 (ALFA)
-=0.00057/4 (TOMMO)
-=0.00265/17 (1000Genomes)
-=0.01005/11 (Korea1K)
-=0.01088/258 (GnomAD)
HGVS:: NC_000013.11:g.18909426_18909427del, NC_000013.10:g.19483566_19483567del

Select item 14910408217.

rs1491040821 has merged into rs57799801 [Homo sapiens]

Variant type:: DELINS
Alleles:: GG>-,GGG,GGGCACTATTGGGGGGGG,GGGG [Show Flanks]
Chromosome:: 13:18905923 (GRCh38)
13:19480063 (GRCh37)
Canonical SPDI:: NC_000013.11:18905917:GGGGGGG:GGGGG,NC_000013.11:18905917:GGGGGGG:GGGGGGGG,NC_000013.11:18905917:GGGGGGG:GGGGGGGGCACTATTGGGGGGGG,NC_000013.11:18905917:GGGGGGG:GGGGGGGGG
Gene:: LINC00408 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GGGGGGGGCACTATTGGGGGGGG=0./0 (ALFA)
-=0.0301/18 (NorthernSweden)
-=0.0402/155 (ALSPAC)
-=0.0499/185 (TWINSUK)
-=0.0849/425 (1000Genomes)
HGVS:: NC_000013.11:g.18905923_18905924del, NC_000013.11:g.18905924dup, NC_000013.11:g.18905918_18905924G[8]CACTATTGGGGGGGG[1], NC_000013.11:g.18905923_18905924dup, NC_000013.10:g.19480063_19480064del, NC_000013.10:g.19480064dup, NC_000013.10:g.19480058_19480064G[8]CACTATTGGGGGGGG[1], NC_000013.10:g.19480063_19480064dup

Select item 14908542948.

rs1490854294 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 13:18918252 (GRCh38)
13:19492392 (GRCh37)
Canonical SPDI:: NC_000013.11:18918251:C:T
Gene:: LINC00408 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
HGVS:: NC_000013.11:g.18918252C>T, NC_000013.10:g.19492392C>T

Select item 14906571729.

rs1490657172 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G,T [Show Flanks]
Chromosome:: 13:18905506 (GRCh38)
13:19479646 (GRCh37)
Canonical SPDI:: NC_000013.11:18905505:C:A,NC_000013.11:18905505:C:G,NC_000013.11:18905505:C:T
Gene:: LINC00408 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000013.11:g.18905506C>A, NC_000013.11:g.18905506C>G, NC_000013.11:g.18905506C>T, NC_000013.10:g.19479646C>A, NC_000013.10:g.19479646C>G, NC_000013.10:g.19479646C>T, NR_104118.1:n.68C>A, NR_104118.1:n.68C>G, NR_104118.1:n.68C>T

Select item 149044267810.

rs1490442678 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C,G [Show Flanks]
Chromosome:: 13:18908071 (GRCh38)
13:19482211 (GRCh37)
Canonical SPDI:: NC_000013.11:18908070:T:C,NC_000013.11:18908070:T:G
Gene:: LINC00408 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
C=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.18908071T>C, NC_000013.11:g.18908071T>G, NC_000013.10:g.19482211T>C, NC_000013.10:g.19482211T>G

Select item 149033796011.

rs1490337960 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 13:18906767 (GRCh38)
13:19480907 (GRCh37)
Canonical SPDI:: NC_000013.11:18906766:G:A,NC_000013.11:18906766:G:T
Gene:: LINC00408 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000043/6 (GnomAD)
HGVS:: NC_000013.11:g.18906767G>A, NC_000013.11:g.18906767G>T, NC_000013.10:g.19480907G>A, NC_000013.10:g.19480907G>T

Select item 149032216112.

rs1490322161 [Homo sapiens]

Variant type:: DELINS
Alleles:: ATTCTGATTGGACTTTATTTTCATGCTGTGAT>- [Show Flanks]
Chromosome:: 13:18905355 (GRCh38)
13:19479495 (GRCh37)
Canonical SPDI:: NC_000013.11:18905353:TATTCTGATTGGACTTTATTTTCATGCTGTGAT:T
Gene:: LINC00408 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
-=0.000053/14 (TOPMED)
-=0.000057/8 (GnomAD)
HGVS:: NC_000013.11:g.18905355_18905386del, NC_000013.10:g.19479495_19479526del

Select item 149030013213.

rs1490300132 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 13:18915569 (GRCh38)
13:19489709 (GRCh37)
Canonical SPDI:: NC_000013.11:18915568:C:A
Gene:: LINC00408 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.18915569C>A, NC_000013.10:g.19489709C>A

Select item 149005252014.

rs1490052520 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 13:18921488 (GRCh38)
13:19495628 (GRCh37)
Canonical SPDI:: NC_000013.11:18921487:T:G
Gene:: LINC00408 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000026/7 (TOPMED)
G=0.000029/4 (GnomAD)
HGVS:: NC_000013.11:g.18921488T>G, NC_000013.10:g.19495628T>G

Select item 149002026215.

rs1490020262 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 13:18908748 (GRCh38)
13:19482888 (GRCh37)
Canonical SPDI:: NC_000013.11:18908747:G:A,NC_000013.11:18908747:G:T
Gene:: LINC00408 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.18908748G>A, NC_000013.11:g.18908748G>T, NC_000013.10:g.19482888G>A, NC_000013.10:g.19482888G>T

Select item 148994044816.

rs1489940448 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 13:18922508 (GRCh38)
13:19496648 (GRCh37)
Canonical SPDI:: NC_000013.11:18922507:A:C
Gene:: LINC00408 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000019/5 (TOPMED)
HGVS:: NC_000013.11:g.18922508A>C, NC_000013.10:g.19496648A>C

Select item 148980881317.

rs1489808813 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 13:18915181 (GRCh38)
13:19489321 (GRCh37)
Canonical SPDI:: NC_000013.11:18915180:G:A
Gene:: LINC00408 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000011/3 (TOPMED)
HGVS:: NC_000013.11:g.18915181G>A, NC_000013.10:g.19489321G>A

Select item 148978979818.

rs1489789798 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 13:18921413 (GRCh38)
13:19495553 (GRCh37)
Canonical SPDI:: NC_000013.11:18921412:C:G
Gene:: LINC00408 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.18921413C>G, NC_000013.10:g.19495553C>G

Select item 148965841019.

rs1489658410 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 13:18908672 (GRCh38)
13:19482812 (GRCh37)
Canonical SPDI:: NC_000013.11:18908671:T:G
Gene:: LINC00408 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
HGVS:: NC_000013.11:g.18908672T>G, NC_000013.10:g.19482812T>G

Select item 148956722520.

rs1489567225 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 13:18918064 (GRCh38)
13:19492204 (GRCh37)
Canonical SPDI:: NC_000013.11:18918063:A:C
Gene:: LINC00408 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000008/2 (TOPMED)
HGVS:: NC_000013.11:g.18918064A>C, NC_000013.10:g.19492204A>C

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