SNP Links for Gene (Select 100652929) - SNP

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Links from Gene

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Select item 14913725041.

rs1491372504 [Homo sapiens]

Variant type:: DELINS
Alleles:: CA>- [Show Flanks]
Chromosome:: 17:79708977 (GRCh38)
17:77682786 (GRCh37)
Canonical SPDI:: NC_000017.11:79708975:ACA:A
Gene:: MIR4739 (Varview), LINC02078 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
HGVS:: NC_000017.11:g.79708977_79708978del, NW_003871089.1:g.292983_292984del, NC_000017.10:g.77682786_77682787del, NR_109783.1:n.897_898del

Select item 14913464632.

rs1491346463 [Homo sapiens]

Variant type:: DEL
Alleles:: CA>- [Show Flanks]
Chromosome:: 17:79712655 (GRCh38)
17:77686419 (GRCh37)
Canonical SPDI:: NC_000017.11:79712654:CA:
Gene:: LINC02078 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
HGVS:: NC_000017.11:g.79712655_79712656del, NW_003871089.1:g.296661_296662del, NC_000017.10:g.77686419_77686420del

Select item 14912883143.

rs1491288314 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->C [Show Flanks]
Chromosome:: 17:79708976 (GRCh38)
17:77682786 (GRCh37)
Canonical SPDI:: NC_000017.11:79708976:C:CC
Gene:: MIR4739 (Varview), LINC02078 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: CC=0./0 (ALFA)
C=0.00002/1 (GnomAD)
HGVS:: NC_000017.11:g.79708977dup, NW_003871089.1:g.292983dup, NC_000017.10:g.77682786dup, NR_109783.1:n.897dup

Select item 14906971424.

rs1490697142 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,G,T [Show Flanks]
Chromosome:: 17:79710201 (GRCh38)
17:-1 (GRCh37)
Canonical SPDI:: NC_000017.11:79710200:C:A,NC_000017.11:79710200:C:G,NC_000017.11:79710200:C:T
Gene:: LINC02078 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.00703/127 (TOMMO)
G=0.01013/93 (GnomAD)
HGVS:: NC_000017.11:g.79710201C>A, NC_000017.11:g.79710201C>G, NC_000017.11:g.79710201C>T, NW_003871089.1:g.294207C>A, NW_003871089.1:g.294207C>G, NW_003871089.1:g.294207C>T, NR_109783.1:n.2121C>A, NR_109783.1:n.2121C>G, NR_109783.1:n.2121C>T

Select item 14898795495.

rs1489879549 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: 17:79709709 (GRCh38)
17:77683517 (GRCh37)
Canonical SPDI:: NC_000017.11:79709708:C:A
Gene:: LINC02078 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000009/1 (GnomAD)
HGVS:: NC_000017.11:g.79709709C>A, NW_003871089.1:g.293715C>A, NC_000017.10:g.77683517C>A, NR_109783.1:n.1629C>A

Select item 14895385486.

rs1489538548 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:79712079 (GRCh38)
17:77685843 (GRCh37)
Canonical SPDI:: NC_000017.11:79712078:G:A
Gene:: LINC02078 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000017.11:g.79712079G>A, NW_003871089.1:g.296085G>A, NC_000017.10:g.77685843G>A, NR_109783.1:n.3999G>A

Select item 14892261837.

rs1489226183 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:79709327 (GRCh38)
17:77683135 (GRCh37)
Canonical SPDI:: NC_000017.11:79709326:C:T
Gene:: LINC02078 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000029/4 (GnomAD)
HGVS:: NC_000017.11:g.79709327C>T, NW_003871089.1:g.293333C>T, NC_000017.10:g.77683135C>T, NR_109783.1:n.1247C>T

Select item 14891279588.

rs1489127958 has merged into rs1283466944 [Homo sapiens]

Variant type:: DELINS
Alleles:: GAGCCCT>-,GAGCCCTGAGCCCT [Show Flanks]
Chromosome:: 17:79705831 (GRCh38)
17:77679640 (GRCh37)
Canonical SPDI:: NC_000017.11:79705813:CCTGAGCCCTGAGCCCTGAGCCCT:CCTGAGCCCTGAGCCCT,NC_000017.11:79705813:CCTGAGCCCTGAGCCCTGAGCCCT:CCTGAGCCCTGAGCCCTGAGCCCTGAGCCCT
Gene:: LINC02078 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CCTGAGCCCTGAGCCCTGAGCCCTGAGCCCT=0./0 (ALFA)
CCTGAGC=0.00004/1 (TOMMO)
HGVS:: NC_000017.11:g.79705817GAGCCCT[2], NC_000017.11:g.79705817GAGCCCT[4], NW_003871089.1:g.289823GAGCCCT[2], NW_003871089.1:g.289823GAGCCCT[4], NC_000017.10:g.77679626GAGCCCT[2], NC_000017.10:g.77679626GAGCCCT[4]

Select item 14890752419.

rs1489075241 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 17:79706509 (GRCh38)
17:77680318 (GRCh37)
Canonical SPDI:: NC_000017.11:79706508:C:A,NC_000017.11:79706508:C:T
Gene:: LINC02078 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000212/4 (TOMMO)
T=0.000343/1 (KOREAN)
HGVS:: NC_000017.11:g.79706509C>A, NC_000017.11:g.79706509C>T, NW_003871089.1:g.290515C>A, NW_003871089.1:g.290515C>T, NC_000017.10:g.77680318C>A, NC_000017.10:g.77680318C>T

Select item 148901694910.

rs1489016949 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 17:79712202 (GRCh38)
17:77685966 (GRCh37)
Canonical SPDI:: NC_000017.11:79712201:G:A,NC_000017.11:79712201:G:T
Gene:: LINC02078 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
HGVS:: NC_000017.11:g.79712202G>A, NC_000017.11:g.79712202G>T, NW_003871089.1:g.296208G>A, NW_003871089.1:g.296208G>T, NC_000017.10:g.77685966G>A, NC_000017.10:g.77685966G>T, NR_109783.1:n.4122G>A, NR_109783.1:n.4122G>T

Select item 148860967511.

rs1488609675 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:79705890 (GRCh38)
17:77679699 (GRCh37)
Canonical SPDI:: NC_000017.11:79705889:G:A
Gene:: LINC02078 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000108/2 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000021/3 (GnomAD)
A=0.000446/2 (Estonian)
HGVS:: NC_000017.11:g.79705890G>A, NW_003871089.1:g.289896G>A, NC_000017.10:g.77679699G>A

Select item 148855820212.

rs1488558202 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:79706567 (GRCh38)
17:77680376 (GRCh37)
Canonical SPDI:: NC_000017.11:79706566:C:T
Gene:: LINC02078 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000015/4 (TOPMED)
HGVS:: NC_000017.11:g.79706567C>T, NW_003871089.1:g.290573C>T, NC_000017.10:g.77680376C>T

Select item 148855613113.

rs1488556131 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:79712516 (GRCh38)
17:77686280 (GRCh37)
Canonical SPDI:: NC_000017.11:79712515:G:A
Gene:: LINC02078 (Varview)
Functional Consequence:: downstream_transcript_variant,500B_downstream_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000015/4 (TOPMED)
HGVS:: NC_000017.11:g.79712516G>A, NW_003871089.1:g.296522G>A, NC_000017.10:g.77686280G>A

Select item 148836380114.

rs1488363801 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 17:79711338 (GRCh38)
17:77685102 (GRCh37)
Canonical SPDI:: NC_000017.11:79711337:A:T
Gene:: LINC02078 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000071/1 (ALFA)
T=0.000038/10 (TOPMED)
T=0.000043/6 (GnomAD)
HGVS:: NC_000017.11:g.79711338A>T, NW_003871089.1:g.295344A>T, NC_000017.10:g.77685102A>T, NR_109783.1:n.3258A>T

Select item 148800024115.

rs1488000241 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 17:79710699 (GRCh38)
17:77684463 (GRCh37)
Canonical SPDI:: NC_000017.11:79710698:A:G
Gene:: LINC02078 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
G=0.000007/1 (GnomAD)
G=0.000023/6 (TOPMED)
HGVS:: NC_000017.11:g.79710699A>G, NW_003871089.1:g.294705A>G, NC_000017.10:g.77684463A>G, NR_109783.1:n.2619A>G

Select item 148790035916.

rs1487900359 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:79711638 (GRCh38)
17:77685402 (GRCh37)
Canonical SPDI:: NC_000017.11:79711637:C:T
Gene:: LINC02078 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000029/4 (GnomAD)
T=0.000035/1 (TOMMO)
C=0.5/1 (SGDP_PRJ)
HGVS:: NC_000017.11:g.79711638C>T, NW_003871089.1:g.295644C>T, NC_000017.10:g.77685402C>T, NR_109783.1:n.3558C>T

Select item 148774139117.

rs1487741391 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 17:79707409 (GRCh38)
17:77681218 (GRCh37)
Canonical SPDI:: NC_000017.11:79707408:G:C,NC_000017.11:79707408:G:T
Gene:: MIR4739 (Varview), LINC02078 (Varview)
Functional Consequence:: 2KB_upstream_variant,non_coding_transcript_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
T=0.000156/1 (1000Genomes)
HGVS:: NC_000017.11:g.79707409G>C, NC_000017.11:g.79707409G>T, NW_003871089.1:g.291415G>C, NW_003871089.1:g.291415G>T, NC_000017.10:g.77681218G>C, NC_000017.10:g.77681218G>T, NR_109783.1:n.144G>C, NR_109783.1:n.144G>T

Select item 148769883718.

rs1487698837 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 17:79708264 (GRCh38)
17:77682073 (GRCh37)
Canonical SPDI:: NC_000017.11:79708263:C:T
Gene:: MIR4739 (Varview), LINC02078 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant,intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000017.11:g.79708264C>T, NW_003871089.1:g.292270C>T, NC_000017.10:g.77682073C>T

Select item 148749367819.

rs1487493678 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 17:79710821 (GRCh38)
17:77684585 (GRCh37)
Canonical SPDI:: NC_000017.11:79710820:T:C
Gene:: LINC02078 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000014/2 (GnomAD)
C=0.000042/11 (TOPMED)
C=0.000342/1 (KOREAN)
HGVS:: NC_000017.11:g.79710821T>C, NW_003871089.1:g.294827T>C, NC_000017.10:g.77684585T>C, NR_109783.1:n.2741T>C

Select item 148748840620.

rs1487488406 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 17:79705359 (GRCh38)
17:77679168 (GRCh37)
Canonical SPDI:: NC_000017.11:79705358:G:A
Gene:: LINC02078 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000017.11:g.79705359G>A, NW_003871089.1:g.289365G>A, NC_000017.10:g.77679168G>A