SNP Links for Gene (Select 100652931) - SNP

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Select item 14607347101.

rs1460734710 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: Y:22314767 (GRCh38)
Y:24460914 (GRCh37)
Canonical SPDI:: NC_000024.10:22314766:C:G
Gene:: RBMY2FP (Varview), LOC100652931 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency
MAF:: G=0.00003/1 (GnomAD_exomes)
HGVS:: NC_000024.10:g.22314767C>G, NC_000024.9:g.24460914C>G, NG_004755.2:g.503881C>G, NR_002193.2:n.604C>G, NR_002193.1:n.606C>G, NM_144971.2:c.*2C>G, NM_144971.1:c.*2C>G

Select item 14135991852.

rs1413599185 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: Y:22315476 (GRCh38)
Y:24461623 (GRCh37)
Canonical SPDI:: NC_000024.10:22315475:G:A
Gene:: RBMY2FP (Varview), LOC100652931 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
HGVS:: NC_000024.10:g.22315476G>A, NC_000024.9:g.24461623G>A, NG_004755.2:g.504590G>A, NR_002193.2:n.1313G>A, NR_002193.1:n.1315G>A, NM_144971.2:c.*711G>A, NM_144971.1:c.*711G>A

Select item 13947022323.

rs1394702232 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: Y:22314757 (GRCh38)
Y:24460904 (GRCh37)
Canonical SPDI:: NC_000024.10:22314756:C:A
Gene:: RBMY2FP (Varview), LOC100652931 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency
MAF:: A=0.00003/1 (GnomAD_exomes)
HGVS:: NC_000024.10:g.22314757C>A, NC_000024.9:g.24460904C>A, NG_004755.2:g.503871C>A, NR_002193.2:n.594C>A, NR_002193.1:n.596C>A, NM_144971.2:c.478C>A, NM_144971.1:c.478C>A

Select item 13884709234.

rs1388470923 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: Y:22318921 (GRCh38)
Y:24465068 (GRCh37)
Canonical SPDI:: NC_000024.10:22318920:T:C
Gene:: LOC100652931 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000024.10:g.22318921T>C, NC_000024.9:g.24465068T>C, NG_004755.2:g.508035T>C

Select item 13755173205.

rs1375517320 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: Y:22314782 (GRCh38)
Y:24460929 (GRCh37)
Canonical SPDI:: NC_000024.10:22314781:T:A
Gene:: RBMY2FP (Varview), LOC100652931 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency
MAF:: A=0.00003/1 (GnomAD_exomes)
HGVS:: NC_000024.10:g.22314782T>A, NC_000024.9:g.24460929T>A, NG_004755.2:g.503896T>A, NR_002193.2:n.619T>A, NR_002193.1:n.621T>A, NM_144971.2:c.*17T>A, NM_144971.1:c.*17T>A

Select item 13626867466.

rs1362686746 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: Y:22314703 (GRCh38)
Y:24460850 (GRCh37)
Canonical SPDI:: NC_000024.10:22314702:G:T
Gene:: RBMY2FP (Varview), LOC100652931 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency,by cluster
MAF:: T=0.00008/3 (GnomAD_exomes)
HGVS:: NC_000024.10:g.22314703G>T, NC_000024.9:g.24460850G>T, NG_004755.2:g.503817G>T, NR_002193.2:n.540G>T, NR_002193.1:n.542G>T, NM_144971.2:c.424G>T, NM_144971.1:c.424G>T

Select item 13601696337.

rs1360169633 [Homo sapiens]

Variant type:: DELINS
Alleles:: AATAAATAAATA>-,AATA,AATAAATA,AATAAATAAATAAATA,AATAAATAAATAAATAAATA,AATAAATAAATAAATAAATAAATA [Show Flanks]
Chromosome:: Y:22315711 (GRCh38)
Y:24461858 (GRCh37)
Canonical SPDI:: NC_000024.10:22315686:AATAAATAAATAAATAAATAAATAAATAAATAAATA:AATAAATAAATAAATAAATAAATA,NC_000024.10:22315686:AATAAATAAATAAATAAATAAATAAATAAATAAATA:AATAAATAAATAAATAAATAAATAAATA,NC_000024.10:22315686:AATAAATAAATAAATAAATAAATAAATAAATAAATA:AATAAATAAATAAATAAATAAATAAATAAATA,NC_000024.10:22315686:AATAAATAAATAAATAAATAAATAAATAAATAAATA:AATAAATAAATAAATAAATAAATAAATAAATAAATAAATA,NC_000024.10:22315686:AATAAATAAATAAATAAATAAATAAATAAATAAATA:AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATA,NC_000024.10:22315686:AATAAATAAATAAATAAATAAATAAATAAATAAATA:AATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATA
Gene:: RBMY2FP (Varview), LOC100652931 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by cluster
HGVS:: NC_000024.10:g.22315687AATA[6], NC_000024.10:g.22315687AATA[7], NC_000024.10:g.22315687AATA[8], NC_000024.10:g.22315687AATA[10], NC_000024.10:g.22315687AATA[11], NC_000024.10:g.22315687AATA[12], NC_000024.9:g.24461834AATA[6], NC_000024.9:g.24461834AATA[7], NC_000024.9:g.24461834AATA[8], NC_000024.9:g.24461834AATA[10], NC_000024.9:g.24461834AATA[11], NC_000024.9:g.24461834AATA[12], NG_004755.2:g.504801AATA[6], NG_004755.2:g.504801AATA[7], NG_004755.2:g.504801AATA[8], NG_004755.2:g.504801AATA[10], NG_004755.2:g.504801AATA[11], NG_004755.2:g.504801AATA[12], NR_002193.2:n.1524AATA[6], NR_002193.2:n.1524AATA[7], NR_002193.2:n.1524AATA[8], NR_002193.2:n.1524AATA[10], NR_002193.2:n.1524AATA[11], NR_002193.2:n.1524AATA[12], NR_002193.1:n.1526AATA[6], NR_002193.1:n.1526AATA[7], NR_002193.1:n.1526AATA[8], NR_002193.1:n.1526AATA[10], NR_002193.1:n.1526AATA[11], NR_002193.1:n.1526AATA[12], NM_144971.2:c.*922AATA[6], NM_144971.2:c.*922AATA[7], NM_144971.2:c.*922AATA[8], NM_144971.2:c.*922AATA[10], NM_144971.2:c.*922AATA[11], NM_144971.2:c.*922AATA[12], NM_144971.1:c.*922AATA[6], NM_144971.1:c.*922AATA[7], NM_144971.1:c.*922AATA[8], NM_144971.1:c.*922AATA[10], NM_144971.1:c.*922AATA[11], NM_144971.1:c.*922AATA[12]

Select item 13236427728.

rs1323642772 [Homo sapiens]

Variant type:: DEL
Alleles:: TT>- [Show Flanks]
Chromosome:: Y:22314779 (GRCh38)
Y:24460926 (GRCh37)
Canonical SPDI:: NC_000024.10:22314778:TT:
Gene:: RBMY2FP (Varview), LOC100652931 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
Validated:: by frequency
MAF:: -=0.00003/1 (GnomAD_exomes)
HGVS:: NC_000024.10:g.22314779_22314780del, NC_000024.9:g.24460926_24460927del, NG_004755.2:g.503893_503894del, NR_002193.2:n.616_617del, NR_002193.1:n.618_619del, NM_144971.2:c.*14_*15del, NM_144971.1:c.*14_*15del

Select item 13191329759.

rs1319132975 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: Y:22317973 (GRCh38)
Y:24464120 (GRCh37)
Canonical SPDI:: NC_000024.10:22317972:A:C
Gene:: LOC100652931 (Varview)
Functional Consequence:: intron_variant
HGVS:: NC_000024.10:g.22317973A>C, NC_000024.9:g.24464120A>C, NG_004755.2:g.507087A>C

Select item 127195943410.

rs1271959434 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: Y:22320581 (GRCh38)
Y:24466728 (GRCh37)
Canonical SPDI:: NC_000024.10:22320580:T:G
Gene:: LOC100652931 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
HGVS:: NC_000024.10:g.22320581T>G, NC_000024.9:g.24466728T>G, NG_004755.2:g.509695T>G

Select item 119406954211.

rs1194069542 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: Y:22314931 (GRCh38)
Y:24461078 (GRCh37)
Canonical SPDI:: NC_000024.10:22314930:C:T
Gene:: RBMY2FP (Varview), LOC100652931 (Varview)
Functional Consequence:: upstream_transcript_variant,2KB_upstream_variant,non_coding_transcript_variant
HGVS:: NC_000024.10:g.22314931C>T, NC_000024.9:g.24461078C>T, NG_004755.2:g.504045C>T, NR_002193.2:n.768C>T, NR_002193.1:n.770C>T, NM_144971.2:c.*166C>T, NM_144971.1:c.*166C>T

Select item 97759395112.

rs977593951 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: Y:22319162 (GRCh38)
Y:24465309 (GRCh37)
Canonical SPDI:: NC_000024.10:22319161:T:G
Gene:: LOC100652931 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by cluster
MAF:: G=0./0 (PRJEB36033)
T=0./0 (SGDP_PRJ)
T=0./0 (Siberian)
G=0.0072/10 (KOREAN)
HGVS:: NC_000024.10:g.22319162T>G, NC_000024.9:g.24465309T>G, NG_004755.2:g.508276T>G

Select item 93628635513.

rs936286355 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: Y:22320568 (GRCh38)
Y:24466715 (GRCh37)
Canonical SPDI:: NC_000024.10:22320567:G:A
Gene:: LOC100652931 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: A=0./0 (PRJEB36033)
G=0./0 (SGDP_PRJ)
G=0./0 (Siberian)
A=0.0014/2 (KOREAN)
HGVS:: NC_000024.10:g.22320568G>A, NC_000024.9:g.24466715G>A, NG_004755.2:g.509682G>A

Select item 92607161614.

rs926071616 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: Y:22320353 (GRCh38)
Y:24466500 (GRCh37)
Canonical SPDI:: NC_000024.10:22320352:A:G
Gene:: LOC100652931 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: A=0.5/1 (Siberian)
HGVS:: NC_000024.10:g.22320353A>G, NC_000024.9:g.24466500A>G, NG_004755.2:g.509467A>G

Select item 91369180615.

rs913691806 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A [Show Flanks]
Chromosome:: Y:22318089 (GRCh38)
Y:24464236 (GRCh37)
Canonical SPDI:: NC_000024.10:22318088:C:A
Gene:: LOC100652931 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency
MAF:: C=0.5/1 (Siberian)
HGVS:: NC_000024.10:g.22318089C>A, NC_000024.9:g.24464236C>A, NG_004755.2:g.507203C>A

Select item 86924444416.

rs869244444 [Homo sapiens]

Variant type:: DEL
Alleles:: C>- [Show Flanks]
Chromosome:: Y:22315728 (GRCh38)
Y:24461875 (GRCh37)
Canonical SPDI:: NC_000024.10:22315727:C:
Gene:: RBMY2FP (Varview), LOC100652931 (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
HGVS:: NC_000024.10:g.22315728del, NC_000024.9:g.24461875del, NG_004755.2:g.504842del, NR_002193.2:n.1565del, NR_002193.1:n.1567del, NM_144971.2:c.*963del, NM_144971.1:c.*963del

Select item 86919378017.

rs869193780 [Homo sapiens]

Variant type:: DELINS
Alleles:: TAAATA>- [Show Flanks]
Chromosome:: Y:22315717 (GRCh38)
Y:24461864 (GRCh37)
Canonical SPDI:: NC_000024.10:22315715:ATAAATA:A
Gene:: RBMY2FP (Varview), LOC100652931 (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
HGVS:: NC_000024.10:g.22315717_22315722del, NC_000024.9:g.24461864_24461869del, NG_004755.2:g.504831_504836del, NR_002193.2:n.1554_1559del, NR_002193.1:n.1556_1561del, NM_144971.2:c.*952_*957del, NM_144971.1:c.*952_*957del

Select item 86914169818.

rs869141698 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->TA [Show Flanks]
Chromosome:: Y:22315822 (GRCh38)
Y:24461970 (GRCh37)
Canonical SPDI:: NC_000024.10:22315822:TA:TATA
Gene:: RBMY2FP (Varview), LOC100652931 (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
HGVS:: NC_000024.10:g.22315823_22315824dup, NC_000024.9:g.24461970_24461971dup, NG_004755.2:g.504937_504938dup, NR_002193.2:n.1660_1661dup, NR_002193.1:n.1662_1663dup, NM_144971.2:c.*1058_*1059dup, NM_144971.1:c.*1058_*1059dup

Select item 78170710319.

rs781707103 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: Y:22315380 (GRCh38)
Y:24461528 (GRCh37)
Canonical SPDI:: NC_000024.10:22315380:TTTTTT:TTTTTTT
Gene:: RBMY2FP (Varview), LOC100652931 (Varview)
Functional Consequence:: non_coding_transcript_variant,2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: T=0.00003/1 (GnomAD)
HGVS:: NC_000024.10:g.22315386dup, NC_000024.9:g.24461533dup, NG_004755.2:g.504500dup, NR_002193.2:n.1223dup, NR_002193.1:n.1225dup, NM_144971.2:c.*621dup, NM_144971.1:c.*621dup

Select item 77944122920.

rs779441229 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: Y:22320684 (GRCh38)
Y:24466831 (GRCh37)
Canonical SPDI:: NC_000024.10:22320683:C:T
Gene:: LOC100652931 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: T=0.0006/1 (1000Genomes)
HGVS:: NC_000024.10:g.22320684C>T, NC_000024.9:g.24466831C>T, NG_004755.2:g.509798C>T