SNP Links for Gene (Select 100652988) - SNP

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Select item 14914657171.

rs1491465717 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CTTCTTTC [Show Flanks]
Chromosome:: 10:4245516 (GRCh38)
10:4287709 (GRCh37)
Canonical SPDI:: NC_000010.11:4245516:TTCTTTC:TTCTTTCCTTCTTTC
Gene:: LINC00702 (Varview), LOC105376369 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: TTCTTTCCTTCTTTC=0./0 (ALFA)
TTCTTTCC=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.4245523_4245524insCTTCTTTC, NC_000010.10:g.4287715_4287716insCTTCTTTC

Select item 14914348752.

rs1491434875 [Homo sapiens]

Variant type:: DELINS
Alleles:: TT>-,T,TTT [Show Flanks]
Chromosome:: 10:4245517 (GRCh38)
10:4287709 (GRCh37)
Canonical SPDI:: NC_000010.11:4245515:TTT:T,NC_000010.11:4245515:TTT:TT,NC_000010.11:4245515:TTT:TTTT
Gene:: LINC00702 (Varview), LOC105376369 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTT=0./0 (ALFA)
-=0.02333/14 (NorthernSweden)
HGVS:: NC_000010.11:g.4245517_4245518del, NC_000010.11:g.4245518del, NC_000010.11:g.4245518dup, NC_000010.10:g.4287709_4287710del, NC_000010.10:g.4287710del, NC_000010.10:g.4287710dup

Select item 14914229683.

rs1491422968 has merged into rs796250774 [Homo sapiens]

Variant type:: DELINS
Alleles:: AA>-,A,AAA,AAAA,AAAAA,AAAAAA [Show Flanks]
Chromosome:: 10:4208612 (GRCh38)
10:4250804 (GRCh37)
Canonical SPDI:: NC_000010.11:4208600:AAAAAAAAAAAAA:AAAAAAAAAAA,NC_000010.11:4208600:AAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000010.11:4208600:AAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000010.11:4208600:AAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000010.11:4208600:AAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000010.11:4208600:AAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA
Gene:: LINC00702 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAAAAAA=0./0 (ALFA)
HGVS:: NC_000010.11:g.4208612_4208613del, NC_000010.11:g.4208613del, NC_000010.11:g.4208613dup, NC_000010.11:g.4208612_4208613dup, NC_000010.11:g.4208611_4208613dup, NC_000010.11:g.4208610_4208613dup, NC_000010.10:g.4250804_4250805del, NC_000010.10:g.4250805del, NC_000010.10:g.4250805dup, NC_000010.10:g.4250804_4250805dup, NC_000010.10:g.4250803_4250805dup, NC_000010.10:g.4250802_4250805dup

Select item 14913871904.

rs1491387190 has merged into rs11380834 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAA>-,A,AA,AAAA,AAAAA,AAAAAA,AAAAAAA [Show Flanks]
Chromosome:: 10:4230005 (GRCh38)
10:4272197 (GRCh37)
Canonical SPDI:: NC_000010.11:4229994:AAAAAAAAAAAAA:AAAAAAAAAA,NC_000010.11:4229994:AAAAAAAAAAAAA:AAAAAAAAAAA,NC_000010.11:4229994:AAAAAAAAAAAAA:AAAAAAAAAAAA,NC_000010.11:4229994:AAAAAAAAAAAAA:AAAAAAAAAAAAAA,NC_000010.11:4229994:AAAAAAAAAAAAA:AAAAAAAAAAAAAAA,NC_000010.11:4229994:AAAAAAAAAAAAA:AAAAAAAAAAAAAAAA,NC_000010.11:4229994:AAAAAAAAAAAAA:AAAAAAAAAAAAAAAAA
Gene:: LINC00702 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAAAAAAA=0./0 (ALFA)
HGVS:: NC_000010.11:g.4230005_4230007del, NC_000010.11:g.4230006_4230007del, NC_000010.11:g.4230007del, NC_000010.11:g.4230007dup, NC_000010.11:g.4230006_4230007dup, NC_000010.11:g.4230005_4230007dup, NC_000010.11:g.4230004_4230007dup, NC_000010.10:g.4272197_4272199del, NC_000010.10:g.4272198_4272199del, NC_000010.10:g.4272199del, NC_000010.10:g.4272199dup, NC_000010.10:g.4272198_4272199dup, NC_000010.10:g.4272197_4272199dup, NC_000010.10:g.4272196_4272199dup

Select item 14913001075.

rs1491300107 [Homo sapiens]

Variant type:: INS
Alleles:: ->TA [Show Flanks]
Chromosome:: 10:4214607 (GRCh38)
10:4256800 (GRCh37)
Canonical SPDI:: NC_000010.11:4214607::TA
Gene:: LINC00702 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: TA=0.000169/2 (ALFA)
TA=0.000022/3 (GnomAD)
HGVS:: NC_000010.11:g.4214607_4214608insTA, NC_000010.10:g.4256799_4256800insTA

Select item 14912144596.

rs1491214459 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->CCTTTCTTTCTT [Show Flanks]
Chromosome:: 10:4245506 (GRCh38)
10:4287699 (GRCh37)
Canonical SPDI:: NC_000010.11:4245506:CTTTCTTTCTT:CTTTCTTTCTTCCTTTCTTTCTT
Gene:: LINC00702 (Varview), LOC105376369 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: CTTTCTTTCTTCCTTTCTTTCTT=0.00008/1 (ALFA)
CTTTCTTTCTTC=0.00018/4 (GnomAD)
HGVS:: NC_000010.11:g.4245507_4245517CTTT[2]CTTCCTTTCTTTCTT[1], NC_000010.10:g.4287699_4287709CTTT[2]CTTCCTTTCTTTCTT[1]

Select item 14911255697.

rs1491125569 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->TA [Show Flanks]
Chromosome:: 10:4208601 (GRCh38)
10:4250794 (GRCh37)
Canonical SPDI:: NC_000010.11:4208601:A:ATA
Gene:: LINC00702 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: ATA=0./0 (ALFA)
AT=0.000046/5 (GnomAD)
HGVS:: NC_000010.11:g.4208602_4208603insTA, NC_000010.10:g.4250794_4250795insTA

Select item 14909490118.

rs1490949011 [Homo sapiens]

Variant type:: DEL
Alleles:: G>- [Show Flanks]
Chromosome:: 10:4228409 (GRCh38)
10:4270601 (GRCh37)
Canonical SPDI:: NC_000010.11:4228408:G:
Gene:: LINC00702 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: -=0./0 (ALFA)
-=0.000008/2 (TOPMED)
HGVS:: NC_000010.11:g.4228409del, NC_000010.10:g.4270601del

Select item 14908436149.

rs1490843614 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:4214279 (GRCh38)
10:4256471 (GRCh37)
Canonical SPDI:: NC_000010.11:4214278:G:A
Gene:: LINC00702 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.4214279G>A, NC_000010.10:g.4256471G>A

Select item 149078407810.

rs1490784078 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 10:4208776 (GRCh38)
10:4250968 (GRCh37)
Canonical SPDI:: NC_000010.11:4208775:C:G
Gene:: LINC00702 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.4208776C>G, NC_000010.10:g.4250968C>G

Select item 149068040911.

rs1490680409 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:4241980 (GRCh38)
10:4284172 (GRCh37)
Canonical SPDI:: NC_000010.11:4241979:A:G
Gene:: LINC00702 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000010.11:g.4241980A>G, NC_000010.10:g.4284172A>G

Select item 149059021012.

rs1490590210 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:4209423 (GRCh38)
10:4251615 (GRCh37)
Canonical SPDI:: NC_000010.11:4209422:G:A
Gene:: LINC00702 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000010.11:g.4209423G>A, NC_000010.10:g.4251615G>A

Select item 149043791913.

rs1490437919 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->T [Show Flanks]
Chromosome:: 10:4234600 (GRCh38)
10:4276793 (GRCh37)
Canonical SPDI:: NC_000010.11:4234600:TTTTTTT:TTTTTTTT
Gene:: LINC00702 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TTTTTTTT=0.000108/2 (ALFA)
T=0.000015/4 (TOPMED)
T=0.000021/3 (GnomAD)
T=0.000446/2 (Estonian)
HGVS:: NC_000010.11:g.4234607dup, NC_000010.10:g.4276799dup

Select item 149042837214.

rs1490428372 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 10:4206721 (GRCh38)
10:4248913 (GRCh37)
Canonical SPDI:: NC_000010.11:4206720:A:G
Gene:: LINC00702 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000011/3 (TOPMED)
G=0.000014/2 (GnomAD)
HGVS:: NC_000010.11:g.4206721A>G, NC_000010.10:g.4248913A>G

Select item 149029247215.

rs1490292472 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 10:4209026 (GRCh38)
10:4251218 (GRCh37)
Canonical SPDI:: NC_000010.11:4209025:G:C
Gene:: LINC00702 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000022/3 (GnomAD)
HGVS:: NC_000010.11:g.4209026G>C, NC_000010.10:g.4251218G>C

Select item 149018936416.

rs1490189364 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 10:4242438 (GRCh38)
10:4284630 (GRCh37)
Canonical SPDI:: NC_000010.11:4242437:G:A
Gene:: LINC00702 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000010.11:g.4242438G>A, NC_000010.10:g.4284630G>A

Select item 149018011717.

rs1490180117 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 10:4235645 (GRCh38)
10:4277837 (GRCh37)
Canonical SPDI:: NC_000010.11:4235644:A:T
Gene:: LINC00702 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000010.11:g.4235645A>T, NC_000010.10:g.4277837A>T

Select item 149010059618.

rs1490100596 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 10:4208403 (GRCh38)
10:4250595 (GRCh37)
Canonical SPDI:: NC_000010.11:4208402:C:T
Gene:: LINC00702 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0.000671/3 (ALFA)
T=0.000007/1 (GnomAD)
T=0.00067/3 (Estonian)
HGVS:: NC_000010.11:g.4208403C>T, NC_000010.10:g.4250595C>T

Select item 149009775519.

rs1490097755 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G,T [Show Flanks]
Chromosome:: 10:4209761 (GRCh38)
10:4251953 (GRCh37)
Canonical SPDI:: NC_000010.11:4209760:C:G,NC_000010.11:4209760:C:T
Gene:: LINC00702 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
G=0.00004/1 (TOMMO)
HGVS:: NC_000010.11:g.4209761C>G, NC_000010.11:g.4209761C>T, NC_000010.10:g.4251953C>G, NC_000010.10:g.4251953C>T

Select item 148995907320.

rs1489959073 [Homo sapiens]

Variant type:: DELINS
Alleles:: A>- [Show Flanks]
Chromosome:: 10:4216737 (GRCh38)
10:4258929 (GRCh37)
Canonical SPDI:: NC_000010.11:4216736:AA:A
Gene:: LINC00702 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: AA=0./0 (ALFA)
-=0.000015/4 (TOPMED)
HGVS:: NC_000010.11:g.4216738del, NC_000010.10:g.4258930del

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