SNP Links for Gene (Select 100861553) - SNP

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Select item 14896155841.

rs1489615584 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: 13:88627243 (GRCh38)
13:89279497 (GRCh37)
Canonical SPDI:: NC_000013.11:88627242:GGG:GG
Gene:: LINC00560 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: GG=0./0 (ALFA)
-=0.000008/2 (TOPMED)
HGVS:: NC_000013.11:g.88627245del, NC_000013.10:g.89279499del, NR_047490.1:n.393del

Select item 14894338222.

rs1489433822 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 13:88630623 (GRCh38)
13:89282877 (GRCh37)
Canonical SPDI:: NC_000013.11:88630622:G:A
Gene:: LINC00560 (Varview)
Functional Consequence:: 500B_downstream_variant,downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.88630623G>A, NC_000013.10:g.89282877G>A

Select item 14894112933.

rs1489411293 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 13:88624634 (GRCh38)
13:89276888 (GRCh37)
Canonical SPDI:: NC_000013.11:88624633:T:C
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000014/2 (GnomAD)
HGVS:: NC_000013.11:g.88624634T>C, NC_000013.10:g.89276888T>C

Select item 14891469744.

rs1489146974 [Homo sapiens]

Variant type:: DELINS
Alleles:: AAAAAAAAGAAAAAAAAAGAAAAAAAAAA>- [Show Flanks]
Chromosome:: 13:88626013 (GRCh38)
13:89278267 (GRCh37)
Canonical SPDI:: NC_000013.11:88626002:AAAAAAAAAAAAAAAAAAGAAAAAAAAAGAAAAAAAAAA:AAAAAAAAAA
Gene:: LINC00560 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by cluster
MAF:: -=0.00008/3 (GnomAD)
HGVS:: NC_000013.11:g.88626013_88626041del, NC_000013.10:g.89278267_89278295del

Select item 14889577505.

rs1488957750 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 13:88624265 (GRCh38)
13:89276519 (GRCh37)
Canonical SPDI:: NC_000013.11:88624264:G:T
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000008/2 (TOPMED)
HGVS:: NC_000013.11:g.88624265G>T, NC_000013.10:g.89276519G>T

Select item 14886279366.

rs1488627936 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 13:88624729 (GRCh38)
13:89276983 (GRCh37)
Canonical SPDI:: NC_000013.11:88624728:G:A
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.88624729G>A, NC_000013.10:g.89276983G>A

Select item 14872270637.

rs1487227063 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 13:88625973 (GRCh38)
13:89278227 (GRCh37)
Canonical SPDI:: NC_000013.11:88625972:G:T
Gene:: LINC00560 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
T=0.000011/3 (TOPMED)
HGVS:: NC_000013.11:g.88625973G>T, NC_000013.10:g.89278227G>T

Select item 14872043748.

rs1487204374 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->A,ATTTTTAAAAAAAAA [Show Flanks]
Chromosome:: 13:88624141 (GRCh38)
13:89276396 (GRCh37)
Canonical SPDI:: NC_000013.11:88624141:AAAAA:AAAAAA,NC_000013.11:88624141:AAAAA:AAAAAATTTTTAAAAAAAAA
Validated:: by frequency,by alfa,by cluster
MAF:: AAAAAA=0.000054/1 (ALFA)
A=0.000019/5 (TOPMED)
A=0.000021/3 (GnomAD)
A=0.000223/1 (Estonian)
HGVS:: NC_000013.11:g.88624146dup, NC_000013.11:g.88624142_88624146A[6]T[5]A[9], NC_000013.10:g.89276400dup, NC_000013.10:g.89276396_89276400A[6]T[5]A[9]

Select item 14871440799.

rs1487144079 [Homo sapiens]

Variant type:: SNV
Alleles:: C>A,T [Show Flanks]
Chromosome:: 13:88630177 (GRCh38)
13:89282431 (GRCh37)
Canonical SPDI:: NC_000013.11:88630176:C:A,NC_000013.11:88630176:C:T
Gene:: LINC00560 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.88630177C>A, NC_000013.11:g.88630177C>T, NC_000013.10:g.89282431C>A, NC_000013.10:g.89282431C>T, NR_047490.1:n.1379C>A, NR_047490.1:n.1379C>T

Select item 148693225810.

rs1486932258 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 13:88629643 (GRCh38)
13:89281897 (GRCh37)
Canonical SPDI:: NC_000013.11:88629642:G:C
Gene:: LINC00560 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.88629643G>C, NC_000013.10:g.89281897G>C

Select item 148648519211.

rs1486485192 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 13:88629329 (GRCh38)
13:89281583 (GRCh37)
Canonical SPDI:: NC_000013.11:88629328:G:A
Gene:: LINC00560 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000007/1 (GnomAD)
A=0.000015/4 (TOPMED)
HGVS:: NC_000013.11:g.88629329G>A, NC_000013.10:g.89281583G>A

Select item 148641471012.

rs1486414710 [Homo sapiens]

Variant type:: DELINS
Alleles:: TAAA>- [Show Flanks]
Chromosome:: 13:88628344 (GRCh38)
13:89280598 (GRCh37)
Canonical SPDI:: NC_000013.11:88628337:AATAAATAAA:AATAAA
Gene:: LINC00560 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: AATAAA=0./0 (ALFA)
-=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.88628340TAAA[1], NC_000013.10:g.89280594TAAA[1]

Select item 148633756813.

rs1486337568 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 13:88626299 (GRCh38)
13:89278553 (GRCh37)
Canonical SPDI:: NC_000013.11:88626298:T:C
Gene:: LINC00560 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.88626299T>C, NC_000013.10:g.89278553T>C

Select item 148596782014.

rs1485967820 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: 13:88628553 (GRCh38)
13:89280807 (GRCh37)
Canonical SPDI:: NC_000013.11:88628552:T:A
Gene:: LINC00560 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
A=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.88628553T>A, NC_000013.10:g.89280807T>A

Select item 148550325815.

rs1485503258 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: 13:88628867 (GRCh38)
13:89281121 (GRCh37)
Canonical SPDI:: NC_000013.11:88628866:G:T
Gene:: LINC00560 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000029/4 (GnomAD)
HGVS:: NC_000013.11:g.88628867G>T, NC_000013.10:g.89281121G>T

Select item 148503647416.

rs1485036474 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: 13:88629797 (GRCh38)
13:89282051 (GRCh37)
Canonical SPDI:: NC_000013.11:88629796:C:T
Gene:: LINC00560 (Varview)
Functional Consequence:: intron_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.88629797C>T, NC_000013.10:g.89282051C>T

Select item 148498577417.

rs1484985774 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C,T [Show Flanks]
Chromosome:: 13:88627562 (GRCh38)
13:89279816 (GRCh37)
Canonical SPDI:: NC_000013.11:88627561:G:C,NC_000013.11:88627561:G:T
Gene:: LINC00560 (Varview)
Functional Consequence:: non_coding_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000013.11:g.88627562G>C, NC_000013.11:g.88627562G>T, NC_000013.10:g.89279816G>C, NC_000013.10:g.89279816G>T, NR_047490.1:n.710G>C, NR_047490.1:n.710G>T

Select item 148488508618.

rs1484885086 [Homo sapiens]

Variant type:: DELINS
Alleles:: G>- [Show Flanks]
Chromosome:: 13:88625811 (GRCh38)
13:89278065 (GRCh37)
Canonical SPDI:: NC_000013.11:88625810:GG:G
Gene:: LINC00560 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: GG=0.000356/5 (ALFA)
-=0.000156/1 (1000Genomes)
-=0.000421/59 (GnomAD)
-=0.000521/138 (TOPMED)
HGVS:: NC_000013.11:g.88625812del, NC_000013.10:g.89278066del

Select item 148436112719.

rs1484361127 [Homo sapiens]

Variant type:: DEL
Alleles:: TCGGGG>- [Show Flanks]
Chromosome:: 13:88625629 (GRCh38)
13:89277883 (GRCh37)
Canonical SPDI:: NC_000013.11:88625628:TCGGGG:
Gene:: LINC00560 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: -=0.00179/8 (ALFA)
-=0.00032/5 (TOMMO)
-=0.00156/7 (Estonian)
HGVS:: NC_000013.11:g.88625629_88625634del, NC_000013.10:g.89277883_89277888del

Select item 148287846620.

rs1482878466 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 13:88626076 (GRCh38)
13:89278330 (GRCh37)
Canonical SPDI:: NC_000013.11:88626075:G:C
Gene:: LINC00560 (Varview)
Functional Consequence:: 2KB_upstream_variant,upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000013.11:g.88626076G>C, NC_000013.10:g.89278330G>C

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