SNP Links for Gene (Select 100873920) - SNP

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Links from Gene

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Select item 14906602711.

rs1490660271 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->ATATATATGT,ATATATGT,ATATGT,GT,TT [Show Flanks]
Chromosome:: X:17557347 (GRCh38)
X:17575469 (GRCh37)
Canonical SPDI:: NC_000023.11:17557347:T:TATATATATGT,NC_000023.11:17557347:T:TATATATGT,NC_000023.11:17557347:T:TATATGT,NC_000023.11:17557347:T:TGT,NC_000023.11:17557347:T:TTT
Gene:: NHS (Varview), NHS-AS1 (Varview), LOC101928389 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TATATATGT=0./0 (ALFA)
HGVS:: NC_000023.11:g.17557348TA[4]TGT[1], NC_000023.11:g.17557348TA[3]TGT[1], NC_000023.11:g.17557348TA[2]TGT[1], NC_000023.11:g.17557348_17557349insGT, NC_000023.11:g.17557348_17557349insTT, NC_000023.10:g.17575469TA[4]TGT[1], NC_000023.10:g.17575469TA[3]TGT[1], NC_000023.10:g.17575469TA[2]TGT[1], NC_000023.10:g.17575469_17575470insGT, NC_000023.10:g.17575469_17575470insTT, NG_011553.2:g.186929TA[4]TGT[1], NG_011553.2:g.186929TA[3]TGT[1], NG_011553.2:g.186929TA[2]TGT[1], NG_011553.2:g.186929_186930insGT, NG_011553.2:g.186929_186930insTT, NR_046632.1:n.57_58insCATATATATA, NR_046632.1:n.57_58insCATATATA, NR_046632.1:n.57_58insCATATA, NR_046632.1:n.57_58insCA, NR_046632.1:n.57_58insAA

Select item 14900542572.

rs1490054257 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: X:17559493 (GRCh38)
X:17577614 (GRCh37)
Canonical SPDI:: NC_000023.11:17559492:C:G
Gene:: NHS (Varview), NHS-AS1 (Varview), LOC101928389 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.17559493C>G, NC_000023.10:g.17577614C>G, NG_011553.2:g.189074C>G

Select item 14893420393.

rs1489342039 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:17560199 (GRCh38)
X:17578320 (GRCh37)
Canonical SPDI:: NC_000023.11:17560198:C:T
Gene:: NHS (Varview), NHS-AS1 (Varview), LOC101928389 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000023.11:g.17560199C>T, NC_000023.10:g.17578320C>T, NG_011553.2:g.189780C>T

Select item 14889227944.

rs1488922794 [Homo sapiens]

Variant type:: SNV
Alleles:: G>T [Show Flanks]
Chromosome:: X:17560356 (GRCh38)
X:17578477 (GRCh37)
Canonical SPDI:: NC_000023.11:17560355:G:T
Gene:: NHS (Varview), NHS-AS1 (Varview), LOC101928389 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.17560356G>T, NC_000023.10:g.17578477G>T, NG_011553.2:g.189937G>T

Select item 14883818595.

rs1488381859 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C,G [Show Flanks]
Chromosome:: X:17557380 (GRCh38)
X:17575501 (GRCh37)
Canonical SPDI:: NC_000023.11:17557379:A:C,NC_000023.11:17557379:A:G
Gene:: NHS (Varview), NHS-AS1 (Varview), LOC101928389 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.00001/1 (GnomAD)
C=0.000019/5 (TOPMED)
G=0.000045/1 (TOMMO)
HGVS:: NC_000023.11:g.17557380A>C, NC_000023.11:g.17557380A>G, NC_000023.10:g.17575501A>C, NC_000023.10:g.17575501A>G, NG_011553.2:g.186961A>C, NG_011553.2:g.186961A>G, NR_046632.1:n.25T>G, NR_046632.1:n.25T>C

Select item 14870874956.

rs1487087495 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:17557309 (GRCh38)
X:17575430 (GRCh37)
Canonical SPDI:: NC_000023.11:17557308:A:G
Gene:: NHS (Varview), NHS-AS1 (Varview), LOC101928389 (Varview)
Functional Consequence:: intron_variant,non_coding_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000011/1 (GnomAD)
HGVS:: NC_000023.11:g.17557309A>G, NC_000023.10:g.17575430A>G, NG_011553.2:g.186890A>G, NR_046632.1:n.96T>C

Select item 14859776217.

rs1485977621 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: X:17554443 (GRCh38)
X:17572564 (GRCh37)
Canonical SPDI:: NC_000023.11:17554442:A:T
Gene:: NHS (Varview), NHS-AS1 (Varview), LOC101928389 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
HGVS:: NC_000023.11:g.17554443A>T, NC_000023.10:g.17572564A>T, NG_011553.2:g.184024A>T

Select item 14855217408.

rs1485521740 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:17553055 (GRCh38)
X:17571176 (GRCh37)
Canonical SPDI:: NC_000023.11:17553054:G:A
Gene:: NHS (Varview), NHS-AS1 (Varview), LOC101928389 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000023.11:g.17553055G>A, NC_000023.10:g.17571176G>A, NG_011553.2:g.182636G>A

Select item 14849377289.

rs1484937728 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:17553559 (GRCh38)
X:17571680 (GRCh37)
Canonical SPDI:: NC_000023.11:17553558:T:C
Gene:: NHS (Varview), NHS-AS1 (Varview), LOC101928389 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000023.11:g.17553559T>C, NC_000023.10:g.17571680T>C, NG_011553.2:g.183140T>C

Select item 148431636710.

rs1484316367 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:17557912 (GRCh38)
X:17576033 (GRCh37)
Canonical SPDI:: NC_000023.11:17557911:A:G
Gene:: NHS (Varview), NHS-AS1 (Varview), LOC101928389 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.00001/1 (GnomAD)
G=0.00009/1 (TOMMO)
HGVS:: NC_000023.11:g.17557912A>G, NC_000023.10:g.17576033A>G, NG_011553.2:g.187493A>G

Select item 148390918411.

rs1483909184 [Homo sapiens]

Variant type:: SNV
Alleles:: T>A [Show Flanks]
Chromosome:: X:17560741 (GRCh38)
X:17578862 (GRCh37)
Canonical SPDI:: NC_000023.11:17560740:T:A
Gene:: NHS (Varview), NHS-AS1 (Varview), LOC101928389 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
HGVS:: NC_000023.11:g.17560741T>A, NC_000023.10:g.17578862T>A, NG_011553.2:g.190322T>A

Select item 148371422912.

rs1483714229 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:17559558 (GRCh38)
X:17577679 (GRCh37)
Canonical SPDI:: NC_000023.11:17559557:G:A
Gene:: NHS (Varview), NHS-AS1 (Varview), LOC101928389 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000142/2 (ALFA)
A=0.000015/4 (TOPMED)
HGVS:: NC_000023.11:g.17559558G>A, NC_000023.10:g.17577679G>A, NG_011553.2:g.189139G>A

Select item 148234935313.

rs1482349353 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:17556434 (GRCh38)
X:17574555 (GRCh37)
Canonical SPDI:: NC_000023.11:17556433:G:A
Gene:: NHS (Varview), NHS-AS1 (Varview), LOC101928389 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000008/2 (TOPMED)
A=0.000019/2 (GnomAD)
HGVS:: NC_000023.11:g.17556434G>A, NC_000023.10:g.17574555G>A, NG_011553.2:g.186015G>A

Select item 148233968514.

rs1482339685 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: X:17554592 (GRCh38)
X:17572713 (GRCh37)
Canonical SPDI:: NC_000023.11:17554591:G:A,NC_000023.11:17554591:G:T
Gene:: NHS (Varview), NHS-AS1 (Varview), LOC101928389 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
A=0.000011/3 (TOPMED)
A=0.000029/3 (GnomAD)
HGVS:: NC_000023.11:g.17554592G>A, NC_000023.11:g.17554592G>T, NC_000023.10:g.17572713G>A, NC_000023.10:g.17572713G>T, NG_011553.2:g.184173G>A, NG_011553.2:g.184173G>T

Select item 148203994215.

rs1482039942 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: X:17557003 (GRCh38)
X:17575124 (GRCh37)
Canonical SPDI:: NC_000023.11:17557002:G:A
Gene:: NHS (Varview), NHS-AS1 (Varview), LOC101928389 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: A=0.000071/1 (ALFA)
A=0.000015/4 (TOPMED)
HGVS:: NC_000023.11:g.17557003G>A, NC_000023.10:g.17575124G>A, NG_011553.2:g.186584G>A

Select item 148182419016.

rs1481824190 [Homo sapiens]

Variant type:: DELINS
Alleles:: CTTC>- [Show Flanks]
Chromosome:: X:17559899 (GRCh38)
X:17578020 (GRCh37)
Canonical SPDI:: NC_000023.11:17559894:CTTCCTTC:CTTC
Gene:: NHS (Varview), NHS-AS1 (Varview), LOC101928389 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: CTTCCTTC=0.000071/1 (ALFA)
-=0.000068/7 (GnomAD)
-=0.000079/21 (TOPMED)
HGVS:: NC_000023.11:g.17559895CTTC[1], NC_000023.10:g.17578016CTTC[1], NG_011553.2:g.189476CTTC[1]

Select item 148181356817.

rs1481813568 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:17558046 (GRCh38)
X:17576167 (GRCh37)
Canonical SPDI:: NC_000023.11:17558045:C:T
Gene:: NHS (Varview), NHS-AS1 (Varview), LOC101928389 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000004/1 (TOPMED)
T=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.17558046C>T, NC_000023.10:g.17576167C>T, NG_011553.2:g.187627C>T

Select item 148118928918.

rs1481189289 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: X:17554134 (GRCh38)
X:17572255 (GRCh37)
Canonical SPDI:: NC_000023.11:17554133:A:G
Gene:: NHS (Varview), NHS-AS1 (Varview), LOC101928389 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: G=0./0 (ALFA)
G=0.00001/1 (GnomAD)
HGVS:: NC_000023.11:g.17554134A>G, NC_000023.10:g.17572255A>G, NG_011553.2:g.183715A>G

Select item 148106707019.

rs1481067070 [Homo sapiens]

Variant type:: SNV
Alleles:: C>T [Show Flanks]
Chromosome:: X:17559232 (GRCh38)
X:17577353 (GRCh37)
Canonical SPDI:: NC_000023.11:17559231:C:T
Gene:: NHS (Varview), NHS-AS1 (Varview), LOC101928389 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_upstream_transcript_variant
HGVS:: NC_000023.11:g.17559232C>T, NC_000023.10:g.17577353C>T, NG_011553.2:g.188813C>T

Select item 148100761820.

rs1481007618 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: X:17557481 (GRCh38)
X:17575602 (GRCh37)
Canonical SPDI:: NC_000023.11:17557480:T:C
Gene:: NHS (Varview), NHS-AS1 (Varview), LOC101928389 (Varview)
Functional Consequence:: intron_variant,genic_upstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000023.11:g.17557481T>C, NC_000023.10:g.17575602T>C, NG_011553.2:g.187062T>C