SNP Links for Gene (Select 100873984) - SNP

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Items: 1 to 20 of 1104

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Select item 14904949661.

rs1490494966 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:239898644 (GRCh38)
1:240061944 (GRCh37)
Canonical SPDI:: NC_000001.11:239898643:T:C
Gene:: CHRM3 (Varview), CHRM3-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.239898644T>C, NC_000001.10:g.240061944T>C, NG_032046.2:g.516715T>C

Select item 14904695542.

rs1490469554 [Homo sapiens]

Variant type:: DELINS
Alleles:: ->C [Show Flanks]
Chromosome:: 1:239897632 (GRCh38)
1:240060933 (GRCh37)
Canonical SPDI:: NC_000001.11:239897632:CCC:CCCC
Gene:: CHRM3 (Varview), CHRM3-AS1 (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,500B_downstream_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: CCCC=0./0 (ALFA)
HGVS:: NC_000001.11:g.239897635dup, NC_000001.10:g.240060935dup, NG_032046.2:g.515706dup

Select item 14902448933.

rs1490244893 [Homo sapiens]

Variant type:: DELINS
Alleles:: CTAT>- [Show Flanks]
Chromosome:: 1:239899331 (GRCh38)
1:240062631 (GRCh37)
Canonical SPDI:: NC_000001.11:239899327:TATCTAT:TAT
Gene:: CHRM3 (Varview), CHRM3-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: TAT=0./0 (ALFA)
-=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.239899331_239899334del, NC_000001.10:g.240062631_240062634del, NG_032046.2:g.517402_517405del

Select item 14901705234.

rs1490170523 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 1:239897761 (GRCh38)
1:240061061 (GRCh37)
Canonical SPDI:: NC_000001.11:239897760:T:G
Gene:: CHRM3 (Varview), CHRM3-AS1 (Varview)
Functional Consequence:: intron_variant,downstream_transcript_variant,500B_downstream_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.239897761T>G, NC_000001.10:g.240061061T>G, NG_032046.2:g.515832T>G

Select item 14897173835.

rs1489717383 [Homo sapiens]

Variant type:: DELINS
Alleles:: AG>- [Show Flanks]
Chromosome:: 1:239900169 (GRCh38)
1:240063469 (GRCh37)
Canonical SPDI:: NC_000001.11:239900167:GAG:G
Gene:: CHRM3 (Varview), CHRM3-AS1 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0.000071/1 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.239900169_239900170del, NC_000001.10:g.240063469_240063470del, NG_032046.2:g.518240_518241del

Select item 14886829576.

rs1488682957 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:239900013 (GRCh38)
1:240063313 (GRCh37)
Canonical SPDI:: NC_000001.11:239900012:G:A
Gene:: CHRM3 (Varview), CHRM3-AS1 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0./0 (ALFA)
A=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.239900013G>A, NC_000001.10:g.240063313G>A, NG_032046.2:g.518084G>A

Select item 14875472827.

rs1487547282 [Homo sapiens]

Variant type:: SNV
Alleles:: T>G [Show Flanks]
Chromosome:: 1:239898023 (GRCh38)
1:240061323 (GRCh37)
Canonical SPDI:: NC_000001.11:239898022:T:G
Gene:: CHRM3 (Varview), CHRM3-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.239898023T>G, NC_000001.10:g.240061323T>G, NG_032046.2:g.516094T>G, NR_046582.1:n.479A>C

Select item 14875460858.

rs1487546085 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 1:239899439 (GRCh38)
1:240062739 (GRCh37)
Canonical SPDI:: NC_000001.11:239899438:A:T
Gene:: CHRM3 (Varview), CHRM3-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000008/2 (TOPMED)
T=0.000014/2 (GnomAD)
HGVS:: NC_000001.11:g.239899439A>T, NC_000001.10:g.240062739A>T, NG_032046.2:g.517510A>T

Select item 14875230239.

rs1487523023 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 1:239900700 (GRCh38)
1:240064000 (GRCh37)
Canonical SPDI:: NC_000001.11:239900699:C:G
Gene:: CHRM3 (Varview), CHRM3-AS1 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_downstream_transcript_variant
HGVS:: NC_000001.11:g.239900700C>G, NC_000001.10:g.240064000C>G, NG_032046.2:g.518771C>G

Select item 148675775310.

rs1486757753 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A,T [Show Flanks]
Chromosome:: 1:239898545 (GRCh38)
1:240061845 (GRCh37)
Canonical SPDI:: NC_000001.11:239898544:G:A,NC_000001.11:239898544:G:T
Gene:: CHRM3 (Varview), CHRM3-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: T=0./0 (ALFA)
T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.239898545G>A, NC_000001.11:g.239898545G>T, NC_000001.10:g.240061845G>A, NC_000001.10:g.240061845G>T, NG_032046.2:g.516616G>A, NG_032046.2:g.516616G>T

Select item 148671167311.

rs1486711673 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:239900787 (GRCh38)
1:240064087 (GRCh37)
Canonical SPDI:: NC_000001.11:239900786:T:C
Gene:: CHRM3 (Varview), CHRM3-AS1 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.239900787T>C, NC_000001.10:g.240064087T>C, NG_032046.2:g.518858T>C

Select item 148573307112.

rs1485733071 [Homo sapiens]

Variant type:: SNV
Alleles:: G>A [Show Flanks]
Chromosome:: 1:239901181 (GRCh38)
1:240064481 (GRCh37)
Canonical SPDI:: NC_000001.11:239901180:G:A
Gene:: CHRM3 (Varview), CHRM3-AS1 (Varview)
Functional Consequence:: intron_variant,2KB_upstream_variant,upstream_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: A=0.000071/1 (ALFA)
A=0.000014/2 (GnomAD)
A=0.000015/4 (TOPMED)
HGVS:: NC_000001.11:g.239901181G>A, NC_000001.10:g.240064481G>A, NG_032046.2:g.519252G>A

Select item 148554812613.

rs1485548126 [Homo sapiens]

Variant type:: DELINS
Alleles:: AGTA>- [Show Flanks]
Chromosome:: 1:239899641 (GRCh38)
1:240062941 (GRCh37)
Canonical SPDI:: NC_000001.11:239899634:TAAGTAAGTA:TAAGTA
Gene:: CHRM3 (Varview), CHRM3-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: TAAGTA=0./0 (ALFA)
-=0.000004/1 (TOPMED)
-=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.239899637AGTA[1], NC_000001.10:g.240062937AGTA[1], NG_032046.2:g.517708AGTA[1]

Select item 148350339814.

rs1483503398 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 1:239900866 (GRCh38)
1:240064166 (GRCh37)
Canonical SPDI:: NC_000001.11:239900865:A:C
Gene:: CHRM3 (Varview), CHRM3-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency
MAF:: C=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.239900866A>C, NC_000001.10:g.240064166A>C, NG_032046.2:g.518937A>C

Select item 148212717715.

rs1482127177 [Homo sapiens]

Variant type:: SNV
Alleles:: T>C [Show Flanks]
Chromosome:: 1:239901598 (GRCh38)
1:240064898 (GRCh37)
Canonical SPDI:: NC_000001.11:239901597:T:C
Gene:: CHRM3 (Varview), CHRM3-AS1 (Varview)
Functional Consequence:: 2KB_upstream_variant,intron_variant,upstream_transcript_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000004/1 (TOPMED)
HGVS:: NC_000001.11:g.239901598T>C, NC_000001.10:g.240064898T>C, NG_032046.2:g.519669T>C

Select item 148166023416.

rs1481660234 [Homo sapiens]

Variant type:: SNV
Alleles:: C>G [Show Flanks]
Chromosome:: 1:239898235 (GRCh38)
1:240061535 (GRCh37)
Canonical SPDI:: NC_000001.11:239898234:C:G
Gene:: CHRM3 (Varview), CHRM3-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000004/1 (TOPMED)
G=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.239898235C>G, NC_000001.10:g.240061535C>G, NG_032046.2:g.516306C>G, NR_046582.1:n.267G>C

Select item 148125581717.

rs1481255817 [Homo sapiens]

Variant type:: SNV
Alleles:: A>C [Show Flanks]
Chromosome:: 1:239898027 (GRCh38)
1:240061327 (GRCh37)
Canonical SPDI:: NC_000001.11:239898026:A:C
Gene:: CHRM3 (Varview), CHRM3-AS1 (Varview)
Functional Consequence:: non_coding_transcript_variant,intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa
MAF:: C=0./0 (ALFA)
C=0.000029/4 (GnomAD)
HGVS:: NC_000001.11:g.239898027A>C, NC_000001.10:g.240061327A>C, NG_032046.2:g.516098A>C, NR_046582.1:n.475T>G

Select item 148111089818.

rs1481110898 [Homo sapiens]

Variant type:: SNV
Alleles:: A>T [Show Flanks]
Chromosome:: 1:239899151 (GRCh38)
1:240062451 (GRCh37)
Canonical SPDI:: NC_000001.11:239899150:A:T
Gene:: CHRM3 (Varview), CHRM3-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency
MAF:: T=0.000007/1 (GnomAD)
HGVS:: NC_000001.11:g.239899151A>T, NC_000001.10:g.240062451A>T, NG_032046.2:g.517222A>T

Select item 148067408419.

rs1480674084 [Homo sapiens]

Variant type:: SNV
Alleles:: G>C [Show Flanks]
Chromosome:: 1:239898783 (GRCh38)
1:240062083 (GRCh37)
Canonical SPDI:: NC_000001.11:239898782:G:C
Gene:: CHRM3 (Varview), CHRM3-AS1 (Varview)
Functional Consequence:: intron_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: C=0./0 (ALFA)
C=0.000007/1 (GnomAD)
C=0.000008/2 (TOPMED)
HGVS:: NC_000001.11:g.239898783G>C, NC_000001.10:g.240062083G>C, NG_032046.2:g.516854G>C

Select item 148058379820.

rs1480583798 [Homo sapiens]

Variant type:: SNV
Alleles:: A>G [Show Flanks]
Chromosome:: 1:239897931 (GRCh38)
1:240061231 (GRCh37)
Canonical SPDI:: NC_000001.11:239897930:A:G
Gene:: CHRM3 (Varview), CHRM3-AS1 (Varview)
Functional Consequence:: downstream_transcript_variant,intron_variant,500B_downstream_variant,genic_downstream_transcript_variant
Validated:: by frequency,by alfa,by cluster
MAF:: G=0./0 (ALFA)
G=0.000043/6 (GnomAD)
G=0.00006/16 (TOPMED)
HGVS:: NC_000001.11:g.239897931A>G, NC_000001.10:g.240061231A>G, NG_032046.2:g.516002A>G

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